Rorug06G0496200

Early light-induced protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Reverse (-)
61296613 .. 61297388
776 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0496200.1

Sequence Viewer

Length: 507 bp
ATGCCCCCTATAAAATTAGATAAAACACAGTGTAAACAGTCCAATAGCAAGTCAAGTGGACTCAAACGCCTTCGTTTAGTGGGTTGTCATGAAATTACAGATGAGGGATTCCGTGCAGTGGCTTCGAGATTTCCATTATTGGAGGACCTTGACATTACATTGGATGAGGACATCTTACATGAAACCCTAGCATTGGTTGGGCGCACATGCCCTTTTTTGAAATCACTGAAGTTCAACAAACTGTTCGGAGATTACCAAAATATACCTGAGCATAATGATTGTGCACTTGCTATAGCAGGAACGATGCACAGGTTACACCACCTCATGCTTTTCAGGAATCAAATGAGTAATGAAGGGTTGTGTGCAATTCTTGATGGTTGTCCTCATCTTGAGTCACTTGATTTACGACGGTGCTTGAATCTTACATTGGAGGGAGATGTGGGTAGAAGATGTGTCGAGCGAATTCAAAAGTTAAGGCTCTTCCCCTGGATTCCATCGAGGACATAG

Protein Analysis

168

Amino Acids

19.16

Weight (kDa)

8.14

Isoelectric Point (pI)

54.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000396)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22840 AT4G14690
fragaria_vesca FvH4_2g20400 FvH4_2g20420 FvH4_2g20430 FvH4_4g01290 FvH4_4g01310 FvH4_5g09070
malus_domestica MD06G1134100.v1.1 MD13G1200100.v1.1 MD13G1200300.v1.1 MD13G1200600.v1.1 MD14G1150400.v1.1 MD16G1200000.v1.1
prunus_persica Prupe.1G021400_v2.0.a1 Prupe.1G021500_v2.0.a1 Prupe.1G021600_v2.0.a1 Prupe.1G021700_v2.0.a1 Prupe.1G021800_v2.0.a1
pyrus_communis pycom13g17350 pycom13g17370 pycom13g17400 pycom13g17410 pycom16g16870
rosa_chinensis RchiOBHm_Chr4g0387791 RchiOBHm_Chr4g0387801 RchiOBHm_Chr6g0286501 RchiOBHm_Chr6g0286511 RchiOBHm_Chr6g0286521 RchiOBHm_Chr6g0286531 RchiOBHm_Chr7g0189141
rosa_laevigata RLG00000004629 RLG00000010094 RLG00000010095 RLG00000012561 RLG00000012563 RLG00000012564
rosa_multiflora Rmu_co8365229.1_g000001 Rmu_sc0004628.1_g000001 Rmu_sc0004628.1_g000002 Rmu_sc0004816.1_g000003 Rmu_sc0004816.1_g000004 Rmu_sc0004816.1_g000005 Rmu_sc0004816.1_g000010 Rmu_sc0008916.1_g000002 Rmu_sc0013958.1_g000002
rosa_roxburghii Rroxscaffold_3G00265750 Rroxscaffold_5G00334410 Rroxscaffold_5G00334420 Rroxscaffold_7G00182230 Rroxscaffold_7G00182240 Rroxscaffold_7G00182250 Rroxscaffold_7G00182270
rosa_rugosa Rorug03G0313400 Rorug03G0313600 Rorug06G0180400 Rorug06G0180500 Rorug06G0180600 Rorug06G0496200
rosa_samantha Rh4AG018400 Rh4AG018500 Rh4BG013400 Rh4BG013500 Rh4CG019600 Rh4CG019700 Rh4DG014200 Rh4DG014300 Rh6AG292700 Rh6AG292800 Rh6AG292900 Rh6AG293300 Rh6AG293400 Rh6AG293500 Rh6BG296200 Rh6BG296300 Rh6BG296500 Rh6BG296600 Rh6BG296700 Rh6BG296800 Rh6BG296900 Rh6CG296800 Rh6CG297000 Rh6CG297100 Rh6CG297200 Rh6DG288700 Rh6DG288800 Rh6DG289000 Rh6DG289100 Rh7AG101000 Rh7BG103600 Rh7CG105000 Rh7CG457500 Rh7DG102900
rosa_wichuraiana Rw4G001210 Rw6G025230 Rw6G025240 Rw6G025250 Rw6G025260 Rw6G025270 Rw6G025540 Rw7G008720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 462
AcuI CTGAAG 1 cut(s) 248
AfiI CCNNNNNNNGG 2 cut(s) 118, 193
AgsI TTSAA 4 cut(s) 220, 235, 418, 467
AjnI CCWGG 1 cut(s) 485
AjuI GAANNNNNNNTTGG 2 cut(s) 410, 442
Alw21I GWGCWC 1 cut(s) 286
Alw44I GTGCAC 1 cut(s) 282
ApaLI GTGCAC 1 cut(s) 282
ApoI RAATTY 1 cut(s) 462
AspLEI GCGC 1 cut(s) 204
AspS9I GGNCC 1 cut(s) 145
AvaII GGWCC 1 cut(s) 145
BaeGI GKGCMC 1 cut(s) 286
Bbv12I GWGCWC 1 cut(s) 286
BccI CCATC 2 cut(s) 368, 502
BcgI CGANNNNNNTGC 2 cut(s) 105, 139
BciT130I CCWGG 1 cut(s) 487
BfaI CTAG 1 cut(s) 188
BfmI CTRYAG 1 cut(s) 291
Bme1390I CCNGG 1 cut(s) 487
Bme18I GGWCC 1 cut(s) 145
BmgT120I GGNCC 1 cut(s) 145
BmrFI CCNGG 1 cut(s) 487
BmsI GCATC 1 cut(s) 294
Bpu10I CCTNAGC 1 cut(s) 267
BpuEI CTTGAG 1 cut(s) 410
BsaJI CCNNGG 1 cut(s) 485
Bsc4I CCNNNNNNNGG 2 cut(s) 118, 193
BseBI CCWGG 1 cut(s) 487
BseDI CCNNGG 1 cut(s) 485
BseGI GGATG 1 cut(s) 169
BseLI CCNNNNNNNGG 2 cut(s) 118, 193
BseMII CTCAG 1 cut(s) 258
BseSI GKGCMC 1 cut(s) 286
BsgI GTGCAG 1 cut(s) 135
BsiHKAI GWGCWC 1 cut(s) 286
BslI CCNNNNNNNGG 2 cut(s) 118, 193
Bsp1286I GDGCHC 1 cut(s) 286
BspCNI CTCAG 1 cut(s) 259
BspHI TCATGA 1 cut(s) 88
BspQI GCTCTTC 1 cut(s) 485
BssECI CCNNGG 1 cut(s) 485
Bst2UI CCWGG 1 cut(s) 487
Bst4CI ACNGT 4 cut(s) 30, 39, 243, 411
Bst6I CTCTTC 1 cut(s) 485
BstDEI CTNAG 1 cut(s) 267
BstF5I GGATG 1 cut(s) 169
BstHHI GCGC 1 cut(s) 204
BstNI CCWGG 1 cut(s) 487
BstNSI RCATGY 1 cut(s) 210
BstSCI CCNGG 1 cut(s) 485
BstSFI CTRYAG 1 cut(s) 291
BstSLI GKGCMC 1 cut(s) 286
BtsCI GGATG 1 cut(s) 169
BtsI GCAGTG 1 cut(s) 123
BtsIMutI CAGTG 3 cut(s) 35, 123, 224
CciI TCATGA 1 cut(s) 88
CfoI GCGC 1 cut(s) 204
Cfr13I GGNCC 1 cut(s) 145
CspCI CAANNNNNGTGG 2 cut(s) 37, 72
CviAII CATG 4 cut(s) 89, 179, 207, 325
CviJI RGCY 2 cut(s) 122, 478
CviKI_1 RGCY 2 cut(s) 122, 478
DdeI CTNAG 1 cut(s) 267
Eam1104I CTCTTC 1 cut(s) 485
EarI CTCTTC 1 cut(s) 485
Eco47I GGWCC 1 cut(s) 145
Eco57I CTGAAG 1 cut(s) 248
EcoO109I RGGNCCY 1 cut(s) 145
EcoRI GAATTC 1 cut(s) 462
EcoRII CCWGG 1 cut(s) 485
FaeI CATG 4 cut(s) 92, 182, 210, 328
FaiI YATR 9 cut(s) 11, 90, 180, 208, 263, 273, 293, 326, 505
FatI CATG 4 cut(s) 88, 178, 206, 324
FokI GGATG 1 cut(s) 176
FspBI CTAG 1 cut(s) 188
GlaI GCGC 1 cut(s) 203
HhaI GCGC 1 cut(s) 204
Hin1II CATG 4 cut(s) 92, 182, 210, 328
Hin6I GCGC 1 cut(s) 202
HinP1I GCGC 1 cut(s) 202
HinfI GANTC 6 cut(s) 60, 108, 337, 392, 418, 490
Hpy166II GTNNAC 3 cut(s) 35, 59, 284
Hpy188I TCNGA 1 cut(s) 248
Hpy188III TCNNGA 5 cut(s) 89, 126, 334, 371, 389
Hpy8I GTNNAC 3 cut(s) 35, 59, 284
Hpy99I CGWCG 1 cut(s) 411
HpyAV CCTTC 2 cut(s) 80, 347
HpyCH4III ACNGT 4 cut(s) 30, 39, 243, 411
HpyCH4V TGCA 4 cut(s) 116, 284, 307, 365
HpyF3I CTNAG 1 cut(s) 267
Hsp92II CATG 4 cut(s) 92, 182, 210, 328
HspAI GCGC 1 cut(s) 202
LguI GCTCTTC 1 cut(s) 485
LpnPI CCDG 6 cut(s) 279, 282, 295, 319, 472, 499
LweI GCATC 1 cut(s) 294
MaeI CTAG 1 cut(s) 188
MaeIII GTNAC 2 cut(s) 312, 393
MboII GAAGA 2 cut(s) 459, 472
MhlI GDGCHC 1 cut(s) 286
MluCI AATT 4 cut(s) 14, 93, 366, 462
MlyI GAGTC 2 cut(s) 54, 401
MnlI CCTC 7 cut(s) 97, 136, 160, 332, 393, 424, 492
MseI TTAA 1 cut(s) 473
MspR9I CCNGG 1 cut(s) 487
MvaI CCWGG 1 cut(s) 487
NlaIII CATG 4 cut(s) 92, 182, 210, 328
NmuCI GTSAC 1 cut(s) 393
NspI RCATGY 1 cut(s) 210
PagI TCATGA 1 cut(s) 88
PciSI GCTCTTC 1 cut(s) 485
PfeI GAWTC 4 cut(s) 108, 337, 418, 490
PleI GAGTC 2 cut(s) 54, 400
PpsI GAGTC 2 cut(s) 54, 400
PpuMI RGGWCCY 1 cut(s) 145
Psp5II RGGWCCY 1 cut(s) 145
Psp6I CCWGG 1 cut(s) 485
PspGI CCWGG 1 cut(s) 485
PspPI GGNCC 1 cut(s) 145
PspPPI RGGWCCY 1 cut(s) 145
SapI GCTCTTC 1 cut(s) 485
SaqAI TTAA 1 cut(s) 473
Sau96I GGNCC 1 cut(s) 145
SchI GAGTC 2 cut(s) 54, 401
ScrFI CCNGG 1 cut(s) 487
SduI GDGCHC 1 cut(s) 286
SetI ASST 4 cut(s) 150, 268, 314, 324
SfaNI GCATC 1 cut(s) 294
SfcI CTRYAG 1 cut(s) 291
SinI GGWCC 1 cut(s) 145
SmlI CTYRAG 1 cut(s) 389
SmoI CTYRAG 1 cut(s) 389
Sse9I AATT 4 cut(s) 14, 93, 366, 462
SspMI CTAG 1 cut(s) 188
StyD4I CCNGG 1 cut(s) 485
TaaI ACNGT 4 cut(s) 30, 39, 243, 411
TaqI TCGA 3 cut(s) 125, 456, 497
TasI AATT 4 cut(s) 14, 93, 366, 462
TfiI GAWTC 4 cut(s) 108, 337, 418, 490
Tru1I TTAA 1 cut(s) 473
Tru9I TTAA 1 cut(s) 473
TscAI CASTG 3 cut(s) 35, 123, 231
TseFI GTSAC 1 cut(s) 393
Tsp45I GTSAC 1 cut(s) 393
TspDTI ATGAA 3 cut(s) 105, 195, 366
TspGWI ACGGA 1 cut(s) 101
TspRI CASTG 3 cut(s) 35, 123, 231
VneI GTGCAC 1 cut(s) 282
VpaK11BI GGWCC 1 cut(s) 145
XapI RAATTY 1 cut(s) 462
XceI RCATGY 1 cut(s) 210
XspI CTAG 1 cut(s) 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.