Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0000396

Physical Location & Seq

Genomic Coordinates Reverse (-)

1185267 .. 1185539

Gene Structure 273 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g01310.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGGTTGGCTTTGTTTCGGCTCTTGCAGTGGAACTGTTAAAGGGCCAGGACATTTTTTCTCAGATCTCCGACGGTGGCGTCTCACTCTTCCTTGGCACTAGCGTTTTGTTGTCGGTTGCATCCGTGATTCCTCTATTTCAAGGAGTCAGTGTGGAGTCAAAATCGAAAGGACTCGTGACCTCAGATGCTGAGTTGTGGAATGGAAGATTGGCCATGTTAGGTTTGGTGGCTTTGGCTTTCACCGAGTACGTCAAGGGTGGAACCCTCATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006950 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009409 GO:0009411 GO:0009416 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009637 GO:0009639 GO:0009642 GO:0009644 GO:0009889 GO:0009987 GO:0010029 GO:0010030 GO:0010114 GO:0010117 GO:0010218 GO:0010224 GO:0010380 GO:0016020 GO:0019222 GO:0031323 GO:0031326 GO:0031976 GO:0031984 GO:0033554 GO:0034357 GO:0034605 GO:0034644 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048518 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051179 GO:0051193 GO:0051234 GO:0051239 GO:0051240 GO:0051716 GO:0055035 GO:0055085 GO:0065007 GO:0070141 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071484 GO:0071486 GO:0071489 GO:0071490 GO:0071491 GO:0071492 GO:0080167 GO:0090056 GO:0104004 GO:1900140 GO:1901401 GO:1901463 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

91

Amino Acids

9.32

Weight (kDa)

4.72

Isoelectric Point (pI)

15.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000396)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22840 AT4G14690
fragaria_vesca	FvH4_2g20400 FvH4_2g20420 FvH4_2g20430 FvH4_4g01290 FvH4_4g01310 FvH4_5g09070
malus_domestica	MD06G1134100.v1.1 MD13G1200100.v1.1 MD13G1200300.v1.1 MD13G1200600.v1.1 MD14G1150400.v1.1 MD16G1200000.v1.1
prunus_persica	Prupe.1G021400_v2.0.a1 Prupe.1G021500_v2.0.a1 Prupe.1G021600_v2.0.a1 Prupe.1G021700_v2.0.a1 Prupe.1G021800_v2.0.a1
pyrus_communis	pycom13g17350 pycom13g17370 pycom13g17400 pycom13g17410 pycom16g16870
rosa_chinensis	RchiOBHm_Chr4g0387791 RchiOBHm_Chr4g0387801 RchiOBHm_Chr6g0286501 RchiOBHm_Chr6g0286511 RchiOBHm_Chr6g0286521 RchiOBHm_Chr6g0286531 RchiOBHm_Chr7g0189141
rosa_laevigata	RLG00000004629 RLG00000010094 RLG00000010095 RLG00000012561 RLG00000012563 RLG00000012564
rosa_multiflora	Rmu_co8365229.1_g000001 Rmu_sc0004628.1_g000001 Rmu_sc0004628.1_g000002 Rmu_sc0004816.1_g000003 Rmu_sc0004816.1_g000004 Rmu_sc0004816.1_g000005 Rmu_sc0004816.1_g000010 Rmu_sc0008916.1_g000002 Rmu_sc0013958.1_g000002
rosa_roxburghii	Rroxscaffold_3G00265750 Rroxscaffold_5G00334410 Rroxscaffold_5G00334420 Rroxscaffold_7G00182230 Rroxscaffold_7G00182240 Rroxscaffold_7G00182250 Rroxscaffold_7G00182270
rosa_rugosa	Rorug03G0313400 Rorug03G0313600 Rorug06G0180400 Rorug06G0180500 Rorug06G0180600 Rorug06G0496200
rosa_samantha	Rh4AG018400 Rh4AG018500 Rh4BG013400 Rh4BG013500 Rh4CG019600 Rh4CG019700 Rh4DG014200 Rh4DG014300 Rh6AG292700 Rh6AG292800 Rh6AG292900 Rh6AG293300 Rh6AG293400 Rh6AG293500 Rh6BG296200 Rh6BG296300 Rh6BG296500 Rh6BG296600 Rh6BG296700 Rh6BG296800 Rh6BG296900 Rh6CG296800 Rh6CG297000 Rh6CG297100 Rh6CG297200 Rh6DG288700 Rh6DG288800 Rh6DG289000 Rh6DG289100 Rh7AG101000 Rh7BG103600 Rh7CG105000 Rh7CG457500 Rh7DG102900
rosa_wichuraiana	Rw4G001210 Rw6G025230 Rw6G025240 Rw6G025250 Rw6G025260 Rw6G025270 Rw6G025540 Rw7G008720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	77
AcoI	YGGCCR	1 cut(s)	210
AcyI	GRCGYC	1 cut(s)	78
AfaI	GTAC	1 cut(s)	248
AgsI	TTSAA	1 cut(s)	140
AjnI	CCWGG	1 cut(s)	45
AjuI	GAANNNNNNNTTGG	2 cut(s)	191, 223
Alw26I	GTCTC	1 cut(s)	85
AlwNI	CAGNNNCTG	1 cut(s)	188
AoxI	GGCC	2 cut(s)	43, 210
AspS9I	GGNCC	1 cut(s)	43
AsuHPI	GGTGA	1 cut(s)	232
BalI	TGGCCA	1 cut(s)	212
BauI	CACGAG	1 cut(s)	173
BciT130I	CCWGG	1 cut(s)	47
BcoDI	GTCTC	1 cut(s)	85
BfaI	CTAG	1 cut(s)	99
BglII	AGATCT	1 cut(s)	63
Bme1390I	CCNGG	1 cut(s)	47
BmgT120I	GGNCC	1 cut(s)	43
BmiI	GGNNCC	1 cut(s)	262
BmrFI	CCNGG	1 cut(s)	47
BmsI	GCATC	2 cut(s)	128, 175
BsaHI	GRCGYC	1 cut(s)	78
BsaJI	CCNNGG	1 cut(s)	91
BsaXI	ACNNNNNCTCC	2 cut(s)	135, 165
BseBI	CCWGG	1 cut(s)	47
BseDI	CCNNGG	1 cut(s)	91
BseGI	GGATG	1 cut(s)	119
BseMII	CTCAG	3 cut(s)	74, 180, 195
BshFI	GGCC	2 cut(s)	45, 212
BsmAI	GTCTC	1 cut(s)	85
BsmBI	CGTCTC	1 cut(s)	85
BsnI	GGCC	2 cut(s)	45, 212
Bsp143I	GATC	1 cut(s)	63
BspANI	GGCC	2 cut(s)	45, 212
BspCNI	CTCAG	3 cut(s)	73, 181, 194
BspLI	GGNNCC	1 cut(s)	262
BssECI	CCNNGG	1 cut(s)	91
BssMI	GATC	1 cut(s)	63
BssNI	GRCGYC	1 cut(s)	78
BssSI	CACGAG	1 cut(s)	173
BssT1I	CCWWGG	1 cut(s)	91
Bst2BI	CACGAG	1 cut(s)	173
Bst2UI	CCWGG	1 cut(s)	47
Bst4CI	ACNGT	2 cut(s)	36, 74
Bst6I	CTCTTC	1 cut(s)	92
BstACI	GRCGYC	1 cut(s)	78
BstDEI	CTNAG	3 cut(s)	60, 181, 189
BstF5I	GGATG	1 cut(s)	119
BstKTI	GATC	1 cut(s)	66
BstMAI	GTCTC	1 cut(s)	85
BstMBI	GATC	1 cut(s)	63
BstNI	CCWGG	1 cut(s)	47
BstSCI	CCNGG	1 cut(s)	45
BstX2I	RGATCY	1 cut(s)	63
BstYI	RGATCY	1 cut(s)	63
BsuRI	GGCC	2 cut(s)	45, 212
BtsCI	GGATG	1 cut(s)	119
BtsI	GCAGTG	1 cut(s)	33
BtsIMutI	CAGTG	2 cut(s)	33, 154
CaiI	CAGNNNCTG	1 cut(s)	188
Cfr13I	GGNCC	1 cut(s)	43
CseI	GACGC	1 cut(s)	67
Csp6I	GTAC	1 cut(s)	247
CviAII	CATG	1 cut(s)	214
CviJI	RGCY	6 cut(s)	9, 20, 45, 212, 230, 236
CviKI_1	RGCY	6 cut(s)	9, 20, 45, 212, 230, 236
CviQI	GTAC	1 cut(s)	247
DdeI	CTNAG	3 cut(s)	60, 181, 189
DpnI	GATC	1 cut(s)	65
DpnII	GATC	1 cut(s)	63
DrdI	GACNNNNNNGTC	1 cut(s)	77
DseDI	GACNNNNNNGTC	1 cut(s)	77
EaeI	YGGCCR	1 cut(s)	210
Eam1104I	CTCTTC	1 cut(s)	92
EarI	CTCTTC	1 cut(s)	92
Eco130I	CCWWGG	1 cut(s)	91
EcoRII	CCWGG	1 cut(s)	45
EcoT14I	CCWWGG	1 cut(s)	91
ErhI	CCWWGG	1 cut(s)	91
Esp3I	CGTCTC	1 cut(s)	85
FaeI	CATG	1 cut(s)	217
FaiI	YATR	3 cut(s)	215, 269, 271
FatI	CATG	1 cut(s)	213
FokI	GGATG	1 cut(s)	106
FspBI	CTAG	1 cut(s)	99
HaeIII	GGCC	2 cut(s)	45, 212
HgaI	GACGC	1 cut(s)	67
Hin1I	GRCGYC	1 cut(s)	78
Hin1II	CATG	1 cut(s)	217
HinfI	GANTC	4 cut(s)	127, 144, 155, 171
HphI	GGTGA	1 cut(s)	232
Hpy188I	TCNGA	3 cut(s)	63, 70, 184
Hpy188III	TCNNGA	1 cut(s)	175
Hpy99I	CGWCG	1 cut(s)	74
HpyCH4III	ACNGT	2 cut(s)	36, 74
HpyCH4IV	ACGT	1 cut(s)	249
HpyCH4V	TGCA	2 cut(s)	26, 119
HpyF3I	CTNAG	3 cut(s)	60, 181, 189
HpySE526I	ACGT	1 cut(s)	249
Hsp92I	GRCGYC	1 cut(s)	78
Hsp92II	CATG	1 cut(s)	217
Kzo9I	GATC	1 cut(s)	63
LpnPI	CCDG	2 cut(s)	32, 59
LweI	GCATC	2 cut(s)	128, 175
MaeI	CTAG	1 cut(s)	99
MaeII	ACGT	1 cut(s)	249
MaeIII	GTNAC	1 cut(s)	175
MalI	GATC	1 cut(s)	65
MboI	GATC	1 cut(s)	63
MboII	GAAGA	2 cut(s)	79, 216
MflI	RGATCY	1 cut(s)	63
MlsI	TGGCCA	1 cut(s)	212
MluNI	TGGCCA	1 cut(s)	212
MlyI	GAGTC	3 cut(s)	153, 164, 165
MmeI	TCCRAC	1 cut(s)	93
MnlI	CCTC	2 cut(s)	141, 190
Mox20I	TGGCCA	1 cut(s)	212
MscI	TGGCCA	1 cut(s)	212
MseI	TTAA	1 cut(s)	38
Msp20I	TGGCCA	1 cut(s)	212
MspR9I	CCNGG	1 cut(s)	47
MvaI	CCWGG	1 cut(s)	47
NdeII	GATC	1 cut(s)	63
NlaIII	CATG	1 cut(s)	217
NlaIV	GGNNCC	1 cut(s)	262
NmuCI	GTSAC	1 cut(s)	175
PfeI	GAWTC	1 cut(s)	127
PleI	GAGTC	3 cut(s)	152, 163, 165
PpsI	GAGTC	3 cut(s)	152, 163, 165
Psp6I	CCWGG	1 cut(s)	45
PspGI	CCWGG	1 cut(s)	45
PspN4I	GGNNCC	1 cut(s)	262
PspPI	GGNCC	1 cut(s)	43
PstNI	CAGNNNCTG	1 cut(s)	188
PsuI	RGATCY	1 cut(s)	63
RsaI	GTAC	1 cut(s)	248
RsaNI	GTAC	1 cut(s)	247
SaqAI	TTAA	1 cut(s)	38
Sau3AI	GATC	1 cut(s)	63
Sau96I	GGNCC	1 cut(s)	43
SchI	GAGTC	3 cut(s)	153, 164, 165
ScrFI	CCNGG	1 cut(s)	47
SetI	ASST	3 cut(s)	182, 223, 252
SfaNI	GCATC	2 cut(s)	128, 175
SspMI	CTAG	1 cut(s)	99
StyD4I	CCNGG	1 cut(s)	45
StyI	CCWWGG	1 cut(s)	91
TaaI	ACNGT	2 cut(s)	36, 74
TaiI	ACGT	1 cut(s)	252
TaqI	TCGA	1 cut(s)	164
TfiI	GAWTC	1 cut(s)	127
Tru1I	TTAA	1 cut(s)	38
Tru9I	TTAA	1 cut(s)	38
TscAI	CASTG	2 cut(s)	33, 154
TseFI	GTSAC	1 cut(s)	175
Tsp45I	GTSAC	1 cut(s)	175
TspGWI	ACGGA	1 cut(s)	112
TspRI	CASTG	2 cut(s)	33, 154
XcmI	CCANNNNNNNNNTGG	1 cut(s)	220
XspI	CTAG	1 cut(s)	99

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.