Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0000396

Physical Location & Seq

Genomic Coordinates Reverse (-)

13132046 .. 13133104

Gene Structure 1059 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g17350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGCTGCATCAGCAACTTTCATGCATTCAACATTCCTAGCTAATTCCTTGGCTTATGGAGCGGGAAAGAACAAATCAGTTAGAGTGAATCACCTTGTTGCACCAACTGTGCACATCTACCCTCAAATAAGGATATGTTCAATGGCCAAGGATGGTCAGAAGAAACAACCATCTATAGTTACAAATGCATCAAAAAATCCACCACCACCACTTCCTACACCTTCTTCTCCCAGCAAGGTTAGCACAAAGTTTTCAGACTTGTTTGCATTCAGTGGGCCAGTGCCGGAGAGGATCAACGGCAGACTTGCAATGGTTGGGTTTGTTTCAGCTCTAGCAGTGGAACTATCCAAGGGGCAGGATGTGTTCGCTCAGATATCCAATGGTGGAGTCTCATTGTTCCTTGGAACTAGTATTTTGATAACAGTGGCATCATTGATTCCTCTATTTAATGGACTCAGCGTGGAATCAGAATCAGATGGGATCATGACCCCAGATGCTGAGCTCATAAATGGAAGGTTGGCCATGTTAGGTCTCGTAGCCTTGGCCTTCACCGAGTATGTGAAGGGCGGAACCCTAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006950 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009409 GO:0009411 GO:0009416 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009637 GO:0009639 GO:0009642 GO:0009644 GO:0009889 GO:0009987 GO:0010029 GO:0010030 GO:0010114 GO:0010117 GO:0010218 GO:0010224 GO:0010380 GO:0016020 GO:0019222 GO:0031323 GO:0031326 GO:0031976 GO:0031984 GO:0033554 GO:0034357 GO:0034605 GO:0034644 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048518 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051179 GO:0051193 GO:0051234 GO:0051239 GO:0051240 GO:0051716 GO:0055035 GO:0055085 GO:0065007 GO:0070141 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071484 GO:0071486 GO:0071489 GO:0071490 GO:0071491 GO:0071492 GO:0080167 GO:0090056 GO:0104004 GO:1900140 GO:1901401 GO:1901463 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

194

Amino Acids

20.21

Weight (kDa)

9.33

Isoelectric Point (pI)

34.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000396)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22840 AT4G14690
fragaria_vesca	FvH4_2g20400 FvH4_2g20420 FvH4_2g20430 FvH4_4g01290 FvH4_4g01310 FvH4_5g09070
malus_domestica	MD06G1134100.v1.1 MD13G1200100.v1.1 MD13G1200300.v1.1 MD13G1200600.v1.1 MD14G1150400.v1.1 MD16G1200000.v1.1
prunus_persica	Prupe.1G021400_v2.0.a1 Prupe.1G021500_v2.0.a1 Prupe.1G021600_v2.0.a1 Prupe.1G021700_v2.0.a1 Prupe.1G021800_v2.0.a1
pyrus_communis	pycom13g17350 pycom13g17370 pycom13g17400 pycom13g17410 pycom16g16870
rosa_chinensis	RchiOBHm_Chr4g0387791 RchiOBHm_Chr4g0387801 RchiOBHm_Chr6g0286501 RchiOBHm_Chr6g0286511 RchiOBHm_Chr6g0286521 RchiOBHm_Chr6g0286531 RchiOBHm_Chr7g0189141
rosa_laevigata	RLG00000004629 RLG00000010094 RLG00000010095 RLG00000012561 RLG00000012563 RLG00000012564
rosa_multiflora	Rmu_co8365229.1_g000001 Rmu_sc0004628.1_g000001 Rmu_sc0004628.1_g000002 Rmu_sc0004816.1_g000003 Rmu_sc0004816.1_g000004 Rmu_sc0004816.1_g000005 Rmu_sc0004816.1_g000010 Rmu_sc0008916.1_g000002 Rmu_sc0013958.1_g000002
rosa_roxburghii	Rroxscaffold_3G00265750 Rroxscaffold_5G00334410 Rroxscaffold_5G00334420 Rroxscaffold_7G00182230 Rroxscaffold_7G00182240 Rroxscaffold_7G00182250 Rroxscaffold_7G00182270
rosa_rugosa	Rorug03G0313400 Rorug03G0313600 Rorug06G0180400 Rorug06G0180500 Rorug06G0180600 Rorug06G0496200
rosa_samantha	Rh4AG018400 Rh4AG018500 Rh4BG013400 Rh4BG013500 Rh4CG019600 Rh4CG019700 Rh4DG014200 Rh4DG014300 Rh6AG292700 Rh6AG292800 Rh6AG292900 Rh6AG293300 Rh6AG293400 Rh6AG293500 Rh6BG296200 Rh6BG296300 Rh6BG296500 Rh6BG296600 Rh6BG296700 Rh6BG296800 Rh6BG296900 Rh6CG296800 Rh6CG297000 Rh6CG297100 Rh6CG297200 Rh6DG288700 Rh6DG288800 Rh6DG289000 Rh6DG289100 Rh7AG101000 Rh7BG103600 Rh7CG105000 Rh7CG457500 Rh7DG102900
rosa_wichuraiana	Rw4G001210 Rw6G025230 Rw6G025240 Rw6G025250 Rw6G025260 Rw6G025270 Rw6G025540 Rw7G008720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	62
AciI	CCGC	2 cut(s)	62, 567
AclWI	GGATC	2 cut(s)	299, 488
AcoI	YGGCCR	2 cut(s)	144, 519
AgsI	TTSAA	2 cut(s)	30, 141
AhlI	ACTAGT	1 cut(s)	407
AluBI	AGCT	3 cut(s)	41, 329, 502
AluI	AGCT	3 cut(s)	41, 329, 502
Alw21I	GWGCWC	2 cut(s)	114, 504
Alw26I	GTCTC	2 cut(s)	394, 536
Alw44I	GTGCAC	1 cut(s)	110
AlwI	GGATC	2 cut(s)	299, 488
AlwNI	CAGNNNCTG	1 cut(s)	497
AoxI	GGCC	4 cut(s)	144, 275, 519, 543
ApaLI	GTGCAC	1 cut(s)	110
ApeKI	GCWGC	1 cut(s)	5
AspS9I	GGNCC	1 cut(s)	275
AsuHPI	GGTGA	2 cut(s)	83, 541
BaeGI	GKGCMC	1 cut(s)	114
BalI	TGGCCA	2 cut(s)	146, 521
BanII	GRGCYC	1 cut(s)	504
Bbv12I	GWGCWC	2 cut(s)	114, 504
BccI	CCATC	3 cut(s)	146, 178, 470
BceAI	ACGGC	1 cut(s)	313
BcoDI	GTCTC	2 cut(s)	394, 536
BcuI	ACTAGT	1 cut(s)	407
BfaI	CTAG	4 cut(s)	38, 332, 408, 575
BfmI	CTRYAG	1 cut(s)	174
BisI	GCNGC	1 cut(s)	6
BlpI	GCTNAGC	1 cut(s)	498
BlsI	GCNGC	1 cut(s)	7
BmgT120I	GGNCC	1 cut(s)	275
BmiI	GGNNCC	1 cut(s)	571
BmsI	GCATC	4 cut(s)	17, 197, 437, 484
Bpu1102I	GCTNAGC	1 cut(s)	498
BsaI	GGTCTC	1 cut(s)	536
BsaJI	CCNNGG	5 cut(s)	48, 147, 348, 400, 540
Bse1I	ACTGG	1 cut(s)	278
Bse3DI	GCAATG	1 cut(s)	315
BseDI	CCNNGG	5 cut(s)	48, 147, 348, 400, 540
BseGI	GGATG	2 cut(s)	157, 364
BseMI	GCAATG	1 cut(s)	315
BseMII	CTCAG	3 cut(s)	383, 469, 489
BseNI	ACTGG	1 cut(s)	278
BseSI	GKGCMC	1 cut(s)	114
BseYI	CCCAGC	1 cut(s)	230
BshFI	GGCC	4 cut(s)	146, 277, 521, 545
BsiHKAI	GWGCWC	2 cut(s)	114, 504
BsiSI	CCGG	1 cut(s)	284
BsmAI	GTCTC	2 cut(s)	394, 536
BsmI	GAATGC	2 cut(s)	25, 266
BsnI	GGCC	4 cut(s)	146, 277, 521, 545
Bso31I	GGTCTC	1 cut(s)	536
Bsp1286I	GDGCHC	2 cut(s)	114, 504
Bsp143I	GATC	2 cut(s)	291, 480
Bsp1720I	GCTNAGC	1 cut(s)	498
BspACI	CCGC	2 cut(s)	62, 567
BspANI	GGCC	4 cut(s)	146, 277, 521, 545
BspCNI	CTCAG	3 cut(s)	382, 468, 490
BspHI	TCATGA	1 cut(s)	483
BspLI	GGNNCC	1 cut(s)	571
BspPI	GGATC	2 cut(s)	299, 488
BspTNI	GGTCTC	1 cut(s)	536
BsrBI	CCGCTC	1 cut(s)	62
BsrDI	GCAATG	1 cut(s)	315
BsrI	ACTGG	1 cut(s)	278
BssECI	CCNNGG	5 cut(s)	48, 147, 348, 400, 540
BssMI	GATC	2 cut(s)	291, 480
BssT1I	CCWWGG	5 cut(s)	48, 147, 348, 400, 540
Bst4CI	ACNGT	2 cut(s)	109, 424
BstDEI	CTNAG	3 cut(s)	369, 455, 498
BstF5I	GGATG	2 cut(s)	157, 364
BstKTI	GATC	2 cut(s)	294, 483
BstMAI	GTCTC	2 cut(s)	394, 536
BstMBI	GATC	2 cut(s)	291, 480
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 59, 240
BstSFI	CTRYAG	1 cut(s)	174
BstSLI	GKGCMC	1 cut(s)	114
BsuRI	GGCC	4 cut(s)	146, 277, 521, 545
BtsCI	GGATG	2 cut(s)	157, 364
BtsI	GCAGTG	1 cut(s)	342
BtsIMutI	CAGTG	4 cut(s)	277, 285, 342, 429
CaiI	CAGNNNCTG	1 cut(s)	497
CciI	TCATGA	1 cut(s)	483
Cfr13I	GGNCC	1 cut(s)	275
CviAII	CATG	3 cut(s)	22, 484, 523
DdeI	CTNAG	3 cut(s)	369, 455, 498
DpnI	GATC	2 cut(s)	293, 482
DpnII	GATC	2 cut(s)	291, 480
EaeI	YGGCCR	2 cut(s)	144, 519
EciI	GGCGGA	1 cut(s)	582
Ecl136II	GAGCTC	1 cut(s)	502
Eco130I	CCWWGG	5 cut(s)	48, 147, 348, 400, 540
Eco24I	GRGCYC	1 cut(s)	504
Eco31I	GGTCTC	1 cut(s)	536
Eco32I	GATATC	1 cut(s)	375
Eco53kI	GAGCTC	1 cut(s)	502
EcoICRI	GAGCTC	1 cut(s)	502
EcoRV	GATATC	1 cut(s)	375
EcoT14I	CCWWGG	5 cut(s)	48, 147, 348, 400, 540
EcoT22I	ATGCAT	2 cut(s)	27, 190
EcoT38I	GRGCYC	1 cut(s)	504
ErhI	CCWWGG	5 cut(s)	48, 147, 348, 400, 540
FaeI	CATG	3 cut(s)	25, 487, 526
FaiI	YATR	8 cut(s)	23, 57, 136, 176, 485, 506, 524, 558
FatI	CATG	3 cut(s)	21, 483, 522
FauI	CCCGC	1 cut(s)	55
Fnu4HI	GCNGC	1 cut(s)	6
FokI	GGATG	2 cut(s)	164, 371
FriOI	GRGCYC	1 cut(s)	504
Fsp4HI	GCNGC	1 cut(s)	6
FspBI	CTAG	4 cut(s)	38, 332, 408, 575
GluI	GCNGC	1 cut(s)	6
GsaI	CCCAGC	1 cut(s)	234
HaeIII	GGCC	4 cut(s)	146, 277, 521, 545
HapII	CCGG	1 cut(s)	284
Hin1II	CATG	3 cut(s)	25, 487, 526
HinfI	GANTC	6 cut(s)	88, 387, 436, 453, 464, 470
HpaII	CCGG	1 cut(s)	284
HphI	GGTGA	2 cut(s)	83, 541
Hpy166II	GTNNAC	1 cut(s)	112
Hpy188I	TCNGA	5 cut(s)	159, 256, 372, 469, 475
Hpy188III	TCNNGA	1 cut(s)	484
Hpy8I	GTNNAC	1 cut(s)	112
HpyAV	CCTTC	4 cut(s)	231, 507, 556, 556
HpyCH4III	ACNGT	2 cut(s)	109, 424
HpyCH4V	TGCA	7 cut(s)	8, 25, 101, 112, 188, 266, 308
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 59, 240
HpyF3I	CTNAG	3 cut(s)	369, 455, 498
Hsp92II	CATG	3 cut(s)	25, 487, 526
Kzo9I	GATC	2 cut(s)	291, 480
LmnI	GCTCC	1 cut(s)	59
LpnPI	CCDG	5 cut(s)	244, 291, 297, 341, 504
LweI	GCATC	4 cut(s)	17, 197, 437, 484
MaeI	CTAG	4 cut(s)	38, 332, 408, 575
MaeIII	GTNAC	1 cut(s)	178
MalI	GATC	2 cut(s)	293, 482
MbiI	CCGCTC	1 cut(s)	62
MboI	GATC	2 cut(s)	291, 480
MboII	GAAGA	2 cut(s)	172, 216
MhlI	GDGCHC	2 cut(s)	114, 504
MlsI	TGGCCA	2 cut(s)	146, 521
MluCI	AATT	1 cut(s)	43
MluNI	TGGCCA	2 cut(s)	146, 521
MlyI	GAGTC	2 cut(s)	396, 447
MnlI	CCTC	3 cut(s)	132, 282, 450
Mox20I	TGGCCA	2 cut(s)	146, 521
Mph1103I	ATGCAT	2 cut(s)	27, 190
MscI	TGGCCA	2 cut(s)	146, 521
MseI	TTAA	1 cut(s)	447
Msp20I	TGGCCA	2 cut(s)	146, 521
MspI	CCGG	1 cut(s)	284
Mva1269I	GAATGC	2 cut(s)	25, 266
MwoI	GCNNNNNNNGC	3 cut(s)	11, 59, 240
NdeII	GATC	2 cut(s)	291, 480
NlaIII	CATG	3 cut(s)	25, 487, 526
NlaIV	GGNNCC	1 cut(s)	571
NsiI	ATGCAT	2 cut(s)	27, 190
PagI	TCATGA	1 cut(s)	483
PctI	GAATGC	2 cut(s)	25, 266
PfeI	GAWTC	4 cut(s)	88, 436, 464, 470
PkrI	GCNGC	1 cut(s)	7
PleI	GAGTC	2 cut(s)	395, 447
PpsI	GAGTC	2 cut(s)	395, 447
Psp124BI	GAGCTC	1 cut(s)	504
PspFI	CCCAGC	1 cut(s)	230
PspN4I	GGNNCC	1 cut(s)	571
PspPI	GGNCC	1 cut(s)	275
PstNI	CAGNNNCTG	1 cut(s)	497
SacI	GAGCTC	1 cut(s)	504
SaqAI	TTAA	1 cut(s)	447
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	2 cut(s)	291, 480
Sau96I	GGNCC	1 cut(s)	275
SchI	GAGTC	2 cut(s)	396, 447
SduI	GDGCHC	2 cut(s)	114, 504
SetI	ASST	8 cut(s)	43, 96, 223, 240, 331, 504, 518, 532
SfaNI	GCATC	4 cut(s)	17, 197, 437, 484
SfcI	CTRYAG	1 cut(s)	174
SpeI	ACTAGT	1 cut(s)	407
Sse9I	AATT	1 cut(s)	43
SsiI	CCGC	2 cut(s)	62, 567
SspMI	CTAG	4 cut(s)	38, 332, 408, 575
SstI	GAGCTC	1 cut(s)	504
StyI	CCWWGG	5 cut(s)	48, 147, 348, 400, 540
TaaI	ACNGT	2 cut(s)	109, 424
TasI	AATT	1 cut(s)	43
TfiI	GAWTC	4 cut(s)	88, 436, 464, 470
Tru1I	TTAA	1 cut(s)	447
Tru9I	TTAA	1 cut(s)	447
TscAI	CASTG	4 cut(s)	277, 285, 342, 429
TseI	GCWGC	1 cut(s)	5
TspDTI	ATGAA	1 cut(s)	10
TspRI	CASTG	4 cut(s)	277, 285, 342, 429
VneI	GTGCAC	1 cut(s)	110
XspI	CTAG	4 cut(s)	38, 332, 408, 575
Zsp2I	ATGCAT	2 cut(s)	27, 190

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.