Rh7CG457500
MYB Family

two-component response regulator

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
Physical Location & Seq
Forward (+)
60241900 .. 60300361
58462 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG457500.1

Sequence Viewer

Length: 372 bp
ATGGCAACGAGAATGCAAGTGGAATTGAACACTTTACTACTCATGACCTTTAGAAGTTTCTTCTTTTGCATTACGACGCTAGCTGGTAACGATGTTACCTTTCTCAATTGTCAAAGAACAAGATTTGACCTGACTGAAATTTTGACTGGTGGAATGATAACTTTACGTAACTTCTCTCTACAACTCCCCATCACTATTGTTTACCTTTGGCTTTCCATACAGAGGCTGTGCCTAGGGAGAATCCTTGAGTTCATGAATGTGCCTGGCTTGACTAGGGAGAACATAGCTAGTCATTTGCAGGTTAAACTGAAGAAAAGAAAGATTTGGAGCTTAAAATCAAACGCAAGATTGAAAGGATACTTGCTATCCTGA

Protein Analysis

123

Amino Acids

14.27

Weight (kDa)

10.43

Isoelectric Point (pI)

33.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000396)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22840 AT4G14690
fragaria_vesca FvH4_2g20400 FvH4_2g20420 FvH4_2g20430 FvH4_4g01290 FvH4_4g01310 FvH4_5g09070
malus_domestica MD06G1134100.v1.1 MD13G1200100.v1.1 MD13G1200300.v1.1 MD13G1200600.v1.1 MD14G1150400.v1.1 MD16G1200000.v1.1
prunus_persica Prupe.1G021400_v2.0.a1 Prupe.1G021500_v2.0.a1 Prupe.1G021600_v2.0.a1 Prupe.1G021700_v2.0.a1 Prupe.1G021800_v2.0.a1
pyrus_communis pycom13g17350 pycom13g17370 pycom13g17400 pycom13g17410 pycom16g16870
rosa_chinensis RchiOBHm_Chr4g0387791 RchiOBHm_Chr4g0387801 RchiOBHm_Chr6g0286501 RchiOBHm_Chr6g0286511 RchiOBHm_Chr6g0286521 RchiOBHm_Chr6g0286531 RchiOBHm_Chr7g0189141
rosa_laevigata RLG00000004629 RLG00000010094 RLG00000010095 RLG00000012561 RLG00000012563 RLG00000012564
rosa_multiflora Rmu_co8365229.1_g000001 Rmu_sc0004628.1_g000001 Rmu_sc0004628.1_g000002 Rmu_sc0004816.1_g000003 Rmu_sc0004816.1_g000004 Rmu_sc0004816.1_g000005 Rmu_sc0004816.1_g000010 Rmu_sc0008916.1_g000002 Rmu_sc0013958.1_g000002
rosa_roxburghii Rroxscaffold_3G00265750 Rroxscaffold_5G00334410 Rroxscaffold_5G00334420 Rroxscaffold_7G00182230 Rroxscaffold_7G00182240 Rroxscaffold_7G00182250 Rroxscaffold_7G00182270
rosa_rugosa Rorug03G0313400 Rorug03G0313600 Rorug06G0180400 Rorug06G0180500 Rorug06G0180600 Rorug06G0496200
rosa_samantha Rh4AG018400 Rh4AG018500 Rh4BG013400 Rh4BG013500 Rh4CG019600 Rh4CG019700 Rh4DG014200 Rh4DG014300 Rh6AG292700 Rh6AG292800 Rh6AG292900 Rh6AG293300 Rh6AG293400 Rh6AG293500 Rh6BG296200 Rh6BG296300 Rh6BG296500 Rh6BG296600 Rh6BG296700 Rh6BG296800 Rh6BG296900 Rh6CG296800 Rh6CG297000 Rh6CG297100 Rh6CG297200 Rh6DG288700 Rh6DG288800 Rh6DG289000 Rh6DG289100 Rh7AG101000 Rh7BG103600 Rh7CG105000 Rh7CG457500 Rh7DG102900
rosa_wichuraiana Rw4G001210 Rw6G025230 Rw6G025240 Rw6G025250 Rw6G025260 Rw6G025270 Rw6G025540 Rw7G008720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 289
AcsI RAATTY 1 cut(s) 138
AcuI CTGAAG 1 cut(s) 329
AfiI CCNNNNNNNGG 1 cut(s) 222
AgsI TTSAA 2 cut(s) 28, 352
AjnI CCWGG 1 cut(s) 262
AluBI AGCT 3 cut(s) 83, 287, 330
AluI AGCT 3 cut(s) 83, 287, 330
AlwNI CAGNNNCTG 1 cut(s) 226
ApoI RAATTY 1 cut(s) 138
ArsI GACNNNNNNTTYG 2 cut(s) 124, 156
AspA2I CCTAGG 1 cut(s) 232
AsuNHI GCTAGC 1 cut(s) 79
AvrII CCTAGG 1 cut(s) 232
BccI CCATC 1 cut(s) 197
BciT130I CCWGG 1 cut(s) 264
BciVI GTATCC 1 cut(s) 350
BfaI CTAG 4 cut(s) 80, 233, 273, 288
BfuAI ACCTGC 1 cut(s) 289
BfuI GTATCC 1 cut(s) 350
BlnI CCTAGG 1 cut(s) 232
Bme1390I CCNGG 1 cut(s) 264
BmrFI CCNGG 1 cut(s) 264
BmtI GCTAGC 1 cut(s) 83
BpuEI CTTGAG 1 cut(s) 266
BsaAI YACGTR 1 cut(s) 167
BsaJI CCNNGG 1 cut(s) 232
Bsc4I CCNNNNNNNGG 1 cut(s) 222
Bse1I ACTGG 1 cut(s) 151
BseBI CCWGG 1 cut(s) 264
BseDI CCNNGG 1 cut(s) 232
BseLI CCNNNNNNNGG 1 cut(s) 222
BseNI ACTGG 1 cut(s) 151
BslI CCNNNNNNNGG 1 cut(s) 222
BsmI GAATGC 1 cut(s) 18
BspHI TCATGA 2 cut(s) 42, 252
BspMI ACCTGC 1 cut(s) 289
BspOI GCTAGC 1 cut(s) 83
BsrI ACTGG 1 cut(s) 151
BssECI CCNNGG 1 cut(s) 232
BssT1I CCWWGG 1 cut(s) 232
Bst2UI CCWGG 1 cut(s) 264
BstBAI YACGTR 1 cut(s) 167
BstC8I GCNNGC 1 cut(s) 81
BstNI CCWGG 1 cut(s) 264
BstSCI CCNGG 1 cut(s) 262
BstSNI TACGTA 1 cut(s) 167
BsuI GTATCC 1 cut(s) 350
BveI ACCTGC 1 cut(s) 289
Cac8I GCNNGC 1 cut(s) 81
CaiI CAGNNNCTG 1 cut(s) 226
CciI TCATGA 2 cut(s) 42, 252
CseI GACGC 1 cut(s) 85
CviAII CATG 2 cut(s) 43, 253
CviJI RGCY 6 cut(s) 83, 211, 226, 267, 287, 330
CviKI_1 RGCY 6 cut(s) 83, 211, 226, 267, 287, 330
Eco105I TACGTA 1 cut(s) 167
Eco130I CCWWGG 1 cut(s) 232
Eco57I CTGAAG 1 cut(s) 329
EcoRII CCWGG 1 cut(s) 262
EcoT14I CCWWGG 1 cut(s) 232
ErhI CCWWGG 1 cut(s) 232
FaeI CATG 2 cut(s) 46, 256
FaiI YATR 4 cut(s) 44, 218, 254, 284
FatI CATG 2 cut(s) 42, 252
FspBI CTAG 4 cut(s) 80, 233, 273, 288
HgaI GACGC 1 cut(s) 85
Hin1II CATG 2 cut(s) 46, 256
HinfI GANTC 1 cut(s) 240
Hpy166II GTNNAC 1 cut(s) 202
Hpy188III TCNNGA 3 cut(s) 43, 253, 369
Hpy8I GTNNAC 1 cut(s) 202
Hpy99I CGWCG 1 cut(s) 79
HpyCH4IV ACGT 1 cut(s) 166
HpyCH4V TGCA 3 cut(s) 16, 69, 298
HpySE526I ACGT 1 cut(s) 166
Hsp92II CATG 2 cut(s) 46, 256
LmnI GCTCC 1 cut(s) 327
LpnPI CCDG 6 cut(s) 69, 132, 143, 249, 276, 284
MaeI CTAG 4 cut(s) 80, 233, 273, 288
MaeII ACGT 1 cut(s) 166
MaeIII GTNAC 3 cut(s) 86, 94, 167
MboII GAAGA 2 cut(s) 52, 322
MfeI CAATTG 1 cut(s) 106
MluCI AATT 3 cut(s) 23, 106, 138
MnlI CCTC 1 cut(s) 216
MseI TTAA 2 cut(s) 303, 332
MslI CAYNNNNRTG 1 cut(s) 257
MspR9I CCNGG 1 cut(s) 264
MunI CAATTG 1 cut(s) 106
Mva1269I GAATGC 1 cut(s) 18
MvaI CCWGG 1 cut(s) 264
NheI GCTAGC 1 cut(s) 79
NlaIII CATG 2 cut(s) 46, 256
PagI TCATGA 2 cut(s) 42, 252
PctI GAATGC 1 cut(s) 18
PfeI GAWTC 1 cut(s) 240
Ppu21I YACGTR 1 cut(s) 167
Psp6I CCWGG 1 cut(s) 262
PspGI CCWGG 1 cut(s) 262
PstNI CAGNNNCTG 1 cut(s) 226
RseI CAYNNNNRTG 1 cut(s) 257
SaqAI TTAA 2 cut(s) 303, 332
ScrFI CCNGG 1 cut(s) 264
SetI ASST 9 cut(s) 50, 85, 101, 132, 169, 207, 289, 303, 332
SmiMI CAYNNNNRTG 1 cut(s) 257
SmlI CTYRAG 1 cut(s) 245
SmoI CTYRAG 1 cut(s) 245
SnaBI TACGTA 1 cut(s) 167
Sse9I AATT 3 cut(s) 23, 106, 138
SspMI CTAG 4 cut(s) 80, 233, 273, 288
StyD4I CCNGG 1 cut(s) 262
StyI CCWWGG 1 cut(s) 232
TaiI ACGT 1 cut(s) 169
TasI AATT 3 cut(s) 23, 106, 138
TfiI GAWTC 1 cut(s) 240
Tru1I TTAA 2 cut(s) 303, 332
Tru9I TTAA 2 cut(s) 303, 332
TspDTI ATGAA 2 cut(s) 241, 269
XapI RAATTY 1 cut(s) 138
XmaJI CCTAGG 1 cut(s) 232
XspI CTAG 4 cut(s) 80, 233, 273, 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.