Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0000396

Physical Location & Seq

Genomic Coordinates Reverse (-)

1492360 .. 1493606

Gene Structure 1247 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G021400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGCTGCCTCAGCTTCCGTGCAATCACTTCTAGCTAACTCAGTGGCTTATGGAGCTGGAAAGAGCAAATCTCTGAGGGTGAACCACCTTCTTCCTGCCAAGTATGCTCCAACTCTGCATAGGTACCCTAACATGAGGGTGCGATCCATGGCCGAGAATGGTCAGGAAGAGCAACCATCTACAGCACCAGAGGCATCTAAAATTCCTCCACCACCTCCTACACCTACTCCTCCTCCTAAACGTAGTCCTAAGATTAGCACTAAGTTTTCAGACGTGTTTGCGTTCAGTGGGCCAGCCCCAGAGAGGATCAACGGCAGGCTTGCAATGGTGGGGTTTGTTTCAGCTCTGGCAGTGGAGCTAGCCAAGGGTCAGGATCTGTTTGCTCAGATATCTGACGGTGGAGTCTCGTTGTTCCTTGGCACCAGTATTTTGCTGTCAGTGGCATCTTTGATACCTCTGTTTAGAGGGGTGAGCGTGGAGTCCAAATCAGATGGGATCATGACCTCCGATGCTGAGCTTTGGAATGGAAGGCTGGCCATGTTAGGTTTGGTAGCTTTGGCCTTCACTGAGTATGTGAAAGGAGGGACCCTTGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006950 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009409 GO:0009411 GO:0009416 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009637 GO:0009639 GO:0009642 GO:0009644 GO:0009889 GO:0009987 GO:0010029 GO:0010030 GO:0010114 GO:0010117 GO:0010218 GO:0010224 GO:0010380 GO:0016020 GO:0019222 GO:0031323 GO:0031326 GO:0031976 GO:0031984 GO:0033554 GO:0034357 GO:0034605 GO:0034644 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048518 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051179 GO:0051193 GO:0051234 GO:0051239 GO:0051240 GO:0051716 GO:0055035 GO:0055085 GO:0065007 GO:0070141 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071484 GO:0071486 GO:0071489 GO:0071490 GO:0071491 GO:0071492 GO:0080167 GO:0090056 GO:0104004 GO:1900140 GO:1901401 GO:1901463 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

199

Amino Acids

20.82

Weight (kDa)

9.6

Isoelectric Point (pI)

41.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000396)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22840 AT4G14690
fragaria_vesca	FvH4_2g20400 FvH4_2g20420 FvH4_2g20430 FvH4_4g01290 FvH4_4g01310 FvH4_5g09070
malus_domestica	MD06G1134100.v1.1 MD13G1200100.v1.1 MD13G1200300.v1.1 MD13G1200600.v1.1 MD14G1150400.v1.1 MD16G1200000.v1.1
prunus_persica	Prupe.1G021400_v2.0.a1 Prupe.1G021500_v2.0.a1 Prupe.1G021600_v2.0.a1 Prupe.1G021700_v2.0.a1 Prupe.1G021800_v2.0.a1
pyrus_communis	pycom13g17350 pycom13g17370 pycom13g17400 pycom13g17410 pycom16g16870
rosa_chinensis	RchiOBHm_Chr4g0387791 RchiOBHm_Chr4g0387801 RchiOBHm_Chr6g0286501 RchiOBHm_Chr6g0286511 RchiOBHm_Chr6g0286521 RchiOBHm_Chr6g0286531 RchiOBHm_Chr7g0189141
rosa_laevigata	RLG00000004629 RLG00000010094 RLG00000010095 RLG00000012561 RLG00000012563 RLG00000012564
rosa_multiflora	Rmu_co8365229.1_g000001 Rmu_sc0004628.1_g000001 Rmu_sc0004628.1_g000002 Rmu_sc0004816.1_g000003 Rmu_sc0004816.1_g000004 Rmu_sc0004816.1_g000005 Rmu_sc0004816.1_g000010 Rmu_sc0008916.1_g000002 Rmu_sc0013958.1_g000002
rosa_roxburghii	Rroxscaffold_3G00265750 Rroxscaffold_5G00334410 Rroxscaffold_5G00334420 Rroxscaffold_7G00182230 Rroxscaffold_7G00182240 Rroxscaffold_7G00182250 Rroxscaffold_7G00182270
rosa_rugosa	Rorug03G0313400 Rorug03G0313600 Rorug06G0180400 Rorug06G0180500 Rorug06G0180600 Rorug06G0496200
rosa_samantha	Rh4AG018400 Rh4AG018500 Rh4BG013400 Rh4BG013500 Rh4CG019600 Rh4CG019700 Rh4DG014200 Rh4DG014300 Rh6AG292700 Rh6AG292800 Rh6AG292900 Rh6AG293300 Rh6AG293400 Rh6AG293500 Rh6BG296200 Rh6BG296300 Rh6BG296500 Rh6BG296600 Rh6BG296700 Rh6BG296800 Rh6BG296900 Rh6CG296800 Rh6CG297000 Rh6CG297100 Rh6CG297200 Rh6DG288700 Rh6DG288800 Rh6DG289000 Rh6DG289100 Rh7AG101000 Rh7BG103600 Rh7CG105000 Rh7CG457500 Rh7DG102900
rosa_wichuraiana	Rw4G001210 Rw6G025230 Rw6G025240 Rw6G025250 Rw6G025260 Rw6G025270 Rw6G025540 Rw7G008720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	401
Acc65I	GGTACC	1 cut(s)	123
AccB1I	GGYRCC	2 cut(s)	123, 419
AclWI	GGATC	4 cut(s)	138, 314, 381, 503
AcoI	YGGCCR	2 cut(s)	150, 534
AcsI	RAATTY	1 cut(s)	201
AfaI	GTAC	1 cut(s)	125
AfiI	CCNNNNNNNGG	1 cut(s)	303
AflIII	ACRYGT	1 cut(s)	273
AjiI	CACGTC	1 cut(s)	274
AluBI	AGCT	7 cut(s)	14, 35, 56, 344, 358, 517, 554
AluI	AGCT	7 cut(s)	14, 35, 56, 344, 358, 517, 554
Alw26I	GTCTC	1 cut(s)	409
AlwI	GGATC	4 cut(s)	138, 314, 381, 503
AlwNI	CAGNNNCTG	1 cut(s)	376
AoxI	GGCC	4 cut(s)	150, 290, 534, 558
ApeKI	GCWGC	1 cut(s)	5
ApoI	RAATTY	1 cut(s)	201
Asp718I	GGTACC	1 cut(s)	123
AspS9I	GGNCC	2 cut(s)	290, 585
AsuHPI	GGTGA	2 cut(s)	91, 481
AsuNHI	GCTAGC	1 cut(s)	358
AvaII	GGWCC	1 cut(s)	585
BaeI	ACNNNNGTAYC	2 cut(s)	443, 476
BalI	TGGCCA	1 cut(s)	536
BanI	GGYRCC	2 cut(s)	123, 419
BbvCI	CCTCAGC	1 cut(s)	10
BccI	CCATC	2 cut(s)	184, 485
BceAI	ACGGC	1 cut(s)	328
BcoDI	GTCTC	1 cut(s)	409
BfaI	CTAG	2 cut(s)	32, 359
BfmI	CTRYAG	1 cut(s)	180
BisI	GCNGC	1 cut(s)	6
BlpI	GCTNAGC	1 cut(s)	513
BlsI	GCNGC	1 cut(s)	7
Bme18I	GGWCC	1 cut(s)	585
BmgBI	CACGTC	1 cut(s)	274
BmgT120I	GGNCC	2 cut(s)	290, 585
BmiI	GGNNCC	4 cut(s)	125, 421, 586, 587
BmsI	GCATC	3 cut(s)	203, 452, 499
BmtI	GCTAGC	1 cut(s)	362
BplI	GAGNNNNNCTC	2 cut(s)	55, 87
Bpu10I	CCTNAGC	1 cut(s)	10
Bpu1102I	GCTNAGC	1 cut(s)	513
BsaJI	CCNNGG	3 cut(s)	147, 363, 415
BsaXI	ACNNNNNCTCC	4 cut(s)	211, 217, 241, 247
Bsc4I	CCNNNNNNNGG	1 cut(s)	303
Bse1I	ACTGG	1 cut(s)	423
Bse3DI	GCAATG	1 cut(s)	330
BseDI	CCNNGG	3 cut(s)	147, 363, 415
BseLI	CCNNNNNNNGG	1 cut(s)	303
BseMI	GCAATG	1 cut(s)	330
BseMII	CTCAG	6 cut(s)	24, 54, 65, 398, 504, 558
BseNI	ACTGG	1 cut(s)	423
BseRI	GAGGAG	2 cut(s)	219, 222
BshFI	GGCC	4 cut(s)	152, 292, 536, 560
BshNI	GGYRCC	2 cut(s)	123, 419
BslI	CCNNNNNNNGG	1 cut(s)	303
BsmAI	GTCTC	1 cut(s)	409
BsnI	GGCC	4 cut(s)	152, 292, 536, 560
Bsp143I	GATC	4 cut(s)	143, 306, 373, 495
Bsp1720I	GCTNAGC	1 cut(s)	513
Bsp19I	CCATGG	1 cut(s)	147
BspANI	GGCC	4 cut(s)	152, 292, 536, 560
BspCNI	CTCAG	6 cut(s)	23, 53, 66, 397, 505, 559
BspHI	TCATGA	1 cut(s)	498
BspLI	GGNNCC	4 cut(s)	125, 421, 586, 587
BspOI	GCTAGC	1 cut(s)	362
BspPI	GGATC	4 cut(s)	138, 314, 381, 503
BspQI	GCTCTTC	1 cut(s)	162
BspT107I	GGYRCC	2 cut(s)	123, 419
BsrDI	GCAATG	1 cut(s)	330
BsrI	ACTGG	1 cut(s)	423
BssECI	CCNNGG	3 cut(s)	147, 363, 415
BssMI	GATC	4 cut(s)	143, 306, 373, 495
BssT1I	CCWWGG	3 cut(s)	147, 363, 415
Bst4CI	ACNGT	1 cut(s)	398
Bst6I	CTCTTC	1 cut(s)	162
BstC8I	GCNNGC	5 cut(s)	294, 317, 321, 360, 534
BstDEI	CTNAG	8 cut(s)	10, 40, 74, 249, 261, 384, 513, 567
BstDSI	CCRYGG	1 cut(s)	147
BstKTI	GATC	4 cut(s)	146, 309, 376, 498
BstMAI	GTCTC	1 cut(s)	409
BstMBI	GATC	4 cut(s)	143, 306, 373, 495
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 53, 104, 191
BstSFI	CTRYAG	1 cut(s)	180
BstX2I	RGATCY	1 cut(s)	373
BstYI	RGATCY	1 cut(s)	373
BsuRI	GGCC	4 cut(s)	152, 292, 536, 560
BtgI	CCRYGG	1 cut(s)	147
BtrI	CACGTC	1 cut(s)	274
BtsI	GCAGTG	1 cut(s)	357
BtsIMutI	CAGTG	5 cut(s)	48, 292, 357, 444, 564
Cac8I	GCNNGC	5 cut(s)	294, 317, 321, 360, 534
CaiI	CAGNNNCTG	1 cut(s)	376
CciI	TCATGA	1 cut(s)	498
Cfr13I	GGNCC	2 cut(s)	290, 585
Csp6I	GTAC	1 cut(s)	124
CviAII	CATG	4 cut(s)	133, 148, 499, 538
CviQI	GTAC	1 cut(s)	124
DdeI	CTNAG	8 cut(s)	10, 40, 74, 249, 261, 384, 513, 567
DpnI	GATC	4 cut(s)	145, 308, 375, 497
DpnII	GATC	4 cut(s)	143, 306, 373, 495
DrdI	GACNNNNNNGTC	1 cut(s)	401
DseDI	GACNNNNNNGTC	1 cut(s)	401
EaeI	YGGCCR	2 cut(s)	150, 534
Eam1104I	CTCTTC	1 cut(s)	162
EarI	CTCTTC	1 cut(s)	162
Eco130I	CCWWGG	3 cut(s)	147, 363, 415
Eco32I	GATATC	1 cut(s)	390
Eco47I	GGWCC	1 cut(s)	585
EcoO109I	RGGNCCY	1 cut(s)	585
EcoRV	GATATC	1 cut(s)	390
EcoT14I	CCWWGG	3 cut(s)	147, 363, 415
ErhI	CCWWGG	3 cut(s)	147, 363, 415
FaeI	CATG	4 cut(s)	136, 151, 502, 541
FaiI	YATR	8 cut(s)	51, 105, 120, 134, 149, 500, 539, 573
FatI	CATG	4 cut(s)	132, 147, 498, 537
Fnu4HI	GCNGC	1 cut(s)	6
Fsp4HI	GCNGC	1 cut(s)	6
FspBI	CTAG	2 cut(s)	32, 359
GluI	GCNGC	1 cut(s)	6
HaeIII	GGCC	4 cut(s)	152, 292, 536, 560
Hin1II	CATG	4 cut(s)	136, 151, 502, 541
HinfI	GANTC	2 cut(s)	402, 479
HphI	GGTGA	2 cut(s)	91, 481
Hpy166II	GTNNAC	1 cut(s)	82
Hpy188I	TCNGA	6 cut(s)	75, 271, 387, 394, 490, 508
Hpy188III	TCNNGA	3 cut(s)	164, 371, 499
Hpy8I	GTNNAC	1 cut(s)	82
HpyAV	CCTTC	3 cut(s)	98, 522, 571
HpyCH4III	ACNGT	1 cut(s)	398
HpyCH4IV	ACGT	2 cut(s)	241, 273
HpyCH4V	TGCA	3 cut(s)	22, 118, 323
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 53, 104, 191
HpyF3I	CTNAG	8 cut(s)	10, 40, 74, 249, 261, 384, 513, 567
HpySE526I	ACGT	2 cut(s)	241, 273
Hsp92II	CATG	4 cut(s)	136, 151, 502, 541
KflI	GGGWCCC	1 cut(s)	585
KpnI	GGTACC	1 cut(s)	127
Kzo9I	GATC	4 cut(s)	143, 306, 373, 495
LguI	GCTCTTC	1 cut(s)	162
LmnI	GCTCC	3 cut(s)	53, 112, 355
LweI	GCATC	3 cut(s)	203, 452, 499
MaeI	CTAG	2 cut(s)	32, 359
MaeII	ACGT	2 cut(s)	241, 273
MalI	GATC	4 cut(s)	145, 308, 375, 497
MboI	GATC	4 cut(s)	143, 306, 373, 495
MboII	GAAGA	2 cut(s)	83, 179
MflI	RGATCY	1 cut(s)	373
MlsI	TGGCCA	1 cut(s)	536
MluCI	AATT	1 cut(s)	201
MluNI	TGGCCA	1 cut(s)	536
MlyI	GAGTC	2 cut(s)	411, 488
MmeI	TCCRAC	1 cut(s)	134
Mox20I	TGGCCA	1 cut(s)	536
MscI	TGGCCA	1 cut(s)	536
MslI	CAYNNNNRTG	1 cut(s)	137
Msp20I	TGGCCA	1 cut(s)	536
MwoI	GCNNNNNNNGC	4 cut(s)	11, 53, 104, 191
NcoI	CCATGG	1 cut(s)	147
NdeII	GATC	4 cut(s)	143, 306, 373, 495
NheI	GCTAGC	1 cut(s)	358
NlaIII	CATG	4 cut(s)	136, 151, 502, 541
NlaIV	GGNNCC	4 cut(s)	125, 421, 586, 587
NmeAIII	GCCGAG	1 cut(s)	178
PagI	TCATGA	1 cut(s)	498
PciSI	GCTCTTC	1 cut(s)	162
PkrI	GCNGC	1 cut(s)	7
PleI	GAGTC	2 cut(s)	410, 487
PpsI	GAGTC	2 cut(s)	410, 487
PpuMI	RGGWCCY	1 cut(s)	585
Psp5II	RGGWCCY	1 cut(s)	585
PspN4I	GGNNCC	4 cut(s)	125, 421, 586, 587
PspPI	GGNCC	2 cut(s)	290, 585
PspPPI	RGGWCCY	1 cut(s)	585
PstNI	CAGNNNCTG	1 cut(s)	376
PsuI	RGATCY	1 cut(s)	373
RsaI	GTAC	1 cut(s)	125
RsaNI	GTAC	1 cut(s)	124
RseI	CAYNNNNRTG	1 cut(s)	137
SapI	GCTCTTC	1 cut(s)	162
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	4 cut(s)	143, 306, 373, 495
Sau96I	GGNCC	2 cut(s)	290, 585
SchI	GAGTC	2 cut(s)	411, 488
SfaNI	GCATC	3 cut(s)	203, 452, 499
SfcI	CTRYAG	1 cut(s)	180
SinI	GGWCC	1 cut(s)	585
SmiMI	CAYNNNNRTG	1 cut(s)	137
Sse9I	AATT	1 cut(s)	201
SspMI	CTAG	2 cut(s)	32, 359
StyI	CCWWGG	3 cut(s)	147, 363, 415
TaaI	ACNGT	1 cut(s)	398
TaiI	ACGT	2 cut(s)	244, 276
TasI	AATT	1 cut(s)	201
TscAI	CASTG	5 cut(s)	48, 292, 357, 444, 571
TseI	GCWGC	1 cut(s)	5
TspGWI	ACGGA	1 cut(s)	7
TspRI	CASTG	5 cut(s)	48, 292, 357, 444, 571
VpaK11BI	GGWCC	1 cut(s)	585
XapI	RAATTY	1 cut(s)	201
XcmI	CCANNNNNNNNNTGG	1 cut(s)	544
XspI	CTAG	2 cut(s)	32, 359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.