pycom13g17400

Early light-induced protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
Physical Location & Seq
Reverse (-)
13154926 .. 13155978
1053 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g17400.3

Sequence Viewer

Length: 585 bp
ATGGCTGCATCAGCAACTTTCATGCATTCAACATTCCTAGCTAATTCCTTGGCTTATGGAGCGGGGAAGAATAAATCAGTTAGAATGAGCCACCTTGTTGCACCAACTGTGCACAGCTACCCTCAAATAAGGATATGCTCAATGGCCAAGGATAGTCAGAAGAAGCAACCATCGACAGTTACAGAGGCATCAAAAAATTCACCACCACCACCTCCTACACCTTCTCCTTCTCCCGGCAAGGTTAGCACAAAGTTTTCAGACTTGTTTGCATTCAGTGGGCCAGTGCCGGAGAGAATCAACGGTAGACTTGCAATGGTTGGGTTCGTTTCAGCTCTGGCGGTGGAACTATCCAAGGGTCAGGATGTGTTTGCTCAGATATCCAACGGTGGAATCTCATTGTTCCTTGGAACTAGTATTTTGCTATCAGTGGCATCATTGATTCCTTTATTTAAAGGAGTCAGCGTGGAGTCAAAATCAGATGGGATCATGACCTCAGATGCTGAGCTCATAAATGGACGGTTGGCCATGTTAGGTCTCGTAGCTTTGGCCTTCACTGAATATGTGACTGGCGGAGCCCTAGTTTAG

Protein Analysis

195

Amino Acids

20.19

Weight (kDa)

9.48

Isoelectric Point (pI)

38.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000396)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22840 AT4G14690
fragaria_vesca FvH4_2g20400 FvH4_2g20420 FvH4_2g20430 FvH4_4g01290 FvH4_4g01310 FvH4_5g09070
malus_domestica MD06G1134100.v1.1 MD13G1200100.v1.1 MD13G1200300.v1.1 MD13G1200600.v1.1 MD14G1150400.v1.1 MD16G1200000.v1.1
prunus_persica Prupe.1G021400_v2.0.a1 Prupe.1G021500_v2.0.a1 Prupe.1G021600_v2.0.a1 Prupe.1G021700_v2.0.a1 Prupe.1G021800_v2.0.a1
pyrus_communis pycom13g17350 pycom13g17370 pycom13g17400 pycom13g17410 pycom16g16870
rosa_chinensis RchiOBHm_Chr4g0387791 RchiOBHm_Chr4g0387801 RchiOBHm_Chr6g0286501 RchiOBHm_Chr6g0286511 RchiOBHm_Chr6g0286521 RchiOBHm_Chr6g0286531 RchiOBHm_Chr7g0189141
rosa_laevigata RLG00000004629 RLG00000010094 RLG00000010095 RLG00000012561 RLG00000012563 RLG00000012564
rosa_multiflora Rmu_co8365229.1_g000001 Rmu_sc0004628.1_g000001 Rmu_sc0004628.1_g000002 Rmu_sc0004816.1_g000003 Rmu_sc0004816.1_g000004 Rmu_sc0004816.1_g000005 Rmu_sc0004816.1_g000010 Rmu_sc0008916.1_g000002 Rmu_sc0013958.1_g000002
rosa_roxburghii Rroxscaffold_3G00265750 Rroxscaffold_5G00334410 Rroxscaffold_5G00334420 Rroxscaffold_7G00182230 Rroxscaffold_7G00182240 Rroxscaffold_7G00182250 Rroxscaffold_7G00182270
rosa_rugosa Rorug03G0313400 Rorug03G0313600 Rorug06G0180400 Rorug06G0180500 Rorug06G0180600 Rorug06G0496200
rosa_samantha Rh4AG018400 Rh4AG018500 Rh4BG013400 Rh4BG013500 Rh4CG019600 Rh4CG019700 Rh4DG014200 Rh4DG014300 Rh6AG292700 Rh6AG292800 Rh6AG292900 Rh6AG293300 Rh6AG293400 Rh6AG293500 Rh6BG296200 Rh6BG296300 Rh6BG296500 Rh6BG296600 Rh6BG296700 Rh6BG296800 Rh6BG296900 Rh6CG296800 Rh6CG297000 Rh6CG297100 Rh6CG297200 Rh6DG288700 Rh6DG288800 Rh6DG289000 Rh6DG289100 Rh7AG101000 Rh7BG103600 Rh7CG105000 Rh7CG457500 Rh7DG102900
rosa_wichuraiana Rw4G001210 Rw6G025230 Rw6G025240 Rw6G025250 Rw6G025260 Rw6G025270 Rw6G025540 Rw7G008720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 62
AccI GTMKAC 1 cut(s) 304
AciI CCGC 3 cut(s) 62, 338, 570
AclWI GGATC 1 cut(s) 491
AcoI YGGCCR 2 cut(s) 144, 522
AcsI RAATTY 1 cut(s) 196
AfiI CCNNNNNNNGG 1 cut(s) 233
AgsI TTSAA 1 cut(s) 30
AhlI ACTAGT 1 cut(s) 410
AluBI AGCT 5 cut(s) 41, 117, 332, 505, 542
AluI AGCT 5 cut(s) 41, 117, 332, 505, 542
Alw21I GWGCWC 2 cut(s) 114, 507
Alw26I GTCTC 1 cut(s) 539
Alw44I GTGCAC 1 cut(s) 110
AlwI GGATC 1 cut(s) 491
AlwNI CAGNNNCTG 1 cut(s) 500
AoxI GGCC 4 cut(s) 144, 278, 522, 546
ApaLI GTGCAC 1 cut(s) 110
ApeKI GCWGC 1 cut(s) 5
ApoI RAATTY 1 cut(s) 196
AspS9I GGNCC 1 cut(s) 278
AsuC2I CCSGG 1 cut(s) 234
AsuHPI GGTGA 1 cut(s) 192
BaeGI GKGCMC 1 cut(s) 114
BalI TGGCCA 2 cut(s) 146, 524
BanII GRGCYC 2 cut(s) 507, 577
Bbv12I GWGCWC 2 cut(s) 114, 507
BccI CCATC 2 cut(s) 178, 473
BcnI CCSGG 1 cut(s) 234
BcoDI GTCTC 1 cut(s) 539
BcuI ACTAGT 1 cut(s) 410
BfaI CTAG 3 cut(s) 38, 411, 578
BisI GCNGC 1 cut(s) 6
BlpI GCTNAGC 1 cut(s) 501
BlsI GCNGC 1 cut(s) 7
Bme1390I CCNGG 1 cut(s) 234
BmgT120I GGNCC 1 cut(s) 278
BmiI GGNNCC 1 cut(s) 574
BmrFI CCNGG 1 cut(s) 234
BmsI GCATC 4 cut(s) 17, 197, 440, 487
Bpu1102I GCTNAGC 1 cut(s) 501
BpuMI CCSGG 1 cut(s) 234
BsaI GGTCTC 1 cut(s) 539
BsaJI CCNNGG 4 cut(s) 48, 147, 351, 403
BsaXI ACNNNNNCTCC 5 cut(s) 208, 238, 447, 477, 564
Bsc4I CCNNNNNNNGG 1 cut(s) 233
Bse1I ACTGG 2 cut(s) 281, 571
Bse3DI GCAATG 1 cut(s) 318
BseDI CCNNGG 4 cut(s) 48, 147, 351, 403
BseGI GGATG 1 cut(s) 367
BseLI CCNNNNNNNGG 1 cut(s) 233
BseMI GCAATG 1 cut(s) 318
BseMII CTCAG 3 cut(s) 386, 492, 507
BseNI ACTGG 2 cut(s) 281, 571
BseSI GKGCMC 1 cut(s) 114
BshFI GGCC 4 cut(s) 146, 280, 524, 548
BsiHKAI GWGCWC 2 cut(s) 114, 507
BsiSI CCGG 2 cut(s) 234, 287
BslI CCNNNNNNNGG 1 cut(s) 233
BsmAI GTCTC 1 cut(s) 539
BsmI GAATGC 2 cut(s) 25, 269
BsnI GGCC 4 cut(s) 146, 280, 524, 548
Bso31I GGTCTC 1 cut(s) 539
Bsp1286I GDGCHC 3 cut(s) 114, 507, 577
Bsp143I GATC 1 cut(s) 483
Bsp1720I GCTNAGC 1 cut(s) 501
BspACI CCGC 3 cut(s) 62, 338, 570
BspANI GGCC 4 cut(s) 146, 280, 524, 548
BspCNI CTCAG 3 cut(s) 385, 493, 506
BspHI TCATGA 1 cut(s) 486
BspLI GGNNCC 1 cut(s) 574
BspPI GGATC 1 cut(s) 491
BspTNI GGTCTC 1 cut(s) 539
BsrBI CCGCTC 1 cut(s) 62
BsrDI GCAATG 1 cut(s) 318
BsrI ACTGG 2 cut(s) 281, 571
BssECI CCNNGG 4 cut(s) 48, 147, 351, 403
BssMI GATC 1 cut(s) 483
BssT1I CCWWGG 4 cut(s) 48, 147, 351, 403
Bst4CI ACNGT 5 cut(s) 109, 178, 302, 386, 519
BstDEI CTNAG 3 cut(s) 372, 493, 501
BstF5I GGATG 1 cut(s) 367
BstKTI GATC 1 cut(s) 486
BstMAI GTCTC 1 cut(s) 539
BstMBI GATC 1 cut(s) 483
BstMWI GCNNNNNNNGC 3 cut(s) 11, 59, 243
BstSCI CCNGG 1 cut(s) 232
BstSLI GKGCMC 1 cut(s) 114
BsuRI GGCC 4 cut(s) 146, 280, 524, 548
BtsCI GGATG 1 cut(s) 367
BtsIMutI CAGTG 4 cut(s) 280, 288, 432, 552
CaiI CAGNNNCTG 1 cut(s) 500
CciI TCATGA 1 cut(s) 486
Cfr13I GGNCC 1 cut(s) 278
CviAII CATG 3 cut(s) 22, 487, 526
DdeI CTNAG 3 cut(s) 372, 493, 501
DpnI GATC 1 cut(s) 485
DpnII GATC 1 cut(s) 483
DraI TTTAAA 1 cut(s) 451
EaeI YGGCCR 2 cut(s) 144, 522
EciI GGCGGA 1 cut(s) 585
Ecl136II GAGCTC 1 cut(s) 505
Eco130I CCWWGG 4 cut(s) 48, 147, 351, 403
Eco24I GRGCYC 2 cut(s) 507, 577
Eco31I GGTCTC 1 cut(s) 539
Eco32I GATATC 1 cut(s) 378
Eco53kI GAGCTC 1 cut(s) 505
EcoICRI GAGCTC 1 cut(s) 505
EcoRV GATATC 1 cut(s) 378
EcoT14I CCWWGG 4 cut(s) 48, 147, 351, 403
EcoT22I ATGCAT 1 cut(s) 27
EcoT38I GRGCYC 2 cut(s) 507, 577
ErhI CCWWGG 4 cut(s) 48, 147, 351, 403
FaeI CATG 3 cut(s) 25, 490, 529
FaiI YATR 7 cut(s) 23, 57, 136, 488, 509, 527, 561
FatI CATG 3 cut(s) 21, 486, 525
FauI CCCGC 1 cut(s) 55
FblI GTMKAC 1 cut(s) 304
Fnu4HI GCNGC 1 cut(s) 6
FokI GGATG 1 cut(s) 374
FriOI GRGCYC 2 cut(s) 507, 577
Fsp4HI GCNGC 1 cut(s) 6
FspBI CTAG 3 cut(s) 38, 411, 578
GluI GCNGC 1 cut(s) 6
HaeIII GGCC 4 cut(s) 146, 280, 524, 548
HapII CCGG 2 cut(s) 234, 287
Hin1II CATG 3 cut(s) 25, 490, 529
HinfI GANTC 5 cut(s) 294, 390, 439, 456, 467
HpaII CCGG 2 cut(s) 234, 287
HphI GGTGA 1 cut(s) 192
Hpy166II GTNNAC 2 cut(s) 112, 305
Hpy188I TCNGA 5 cut(s) 159, 259, 375, 478, 496
Hpy188III TCNNGA 2 cut(s) 359, 487
Hpy8I GTNNAC 2 cut(s) 112, 305
HpyAV CCTTC 3 cut(s) 231, 237, 559
HpyCH4III ACNGT 5 cut(s) 109, 178, 302, 386, 519
HpyCH4V TGCA 6 cut(s) 8, 25, 101, 112, 269, 311
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 59, 243
HpyF3I CTNAG 3 cut(s) 372, 493, 501
Hsp92II CATG 3 cut(s) 25, 490, 529
Kzo9I GATC 1 cut(s) 483
LmnI GCTCC 2 cut(s) 59, 572
LpnPI CCDG 6 cut(s) 247, 294, 300, 320, 344, 552
LweI GCATC 4 cut(s) 17, 197, 440, 487
MaeI CTAG 3 cut(s) 38, 411, 578
MaeIII GTNAC 2 cut(s) 178, 562
MalI GATC 1 cut(s) 485
MbiI CCGCTC 1 cut(s) 62
MboI GATC 1 cut(s) 483
MboII GAAGA 2 cut(s) 79, 172
MhlI GDGCHC 3 cut(s) 114, 507, 577
MlsI TGGCCA 2 cut(s) 146, 524
MluCI AATT 2 cut(s) 43, 196
MluNI TGGCCA 2 cut(s) 146, 524
MlyI GAGTC 2 cut(s) 465, 476
MmeI TCCRAC 1 cut(s) 405
MnlI CCTC 4 cut(s) 132, 178, 222, 502
Mox20I TGGCCA 2 cut(s) 146, 524
Mph1103I ATGCAT 1 cut(s) 27
MscI TGGCCA 2 cut(s) 146, 524
MseI TTAA 1 cut(s) 450
Msp20I TGGCCA 2 cut(s) 146, 524
MspI CCGG 2 cut(s) 234, 287
MspR9I CCNGG 1 cut(s) 234
Mva1269I GAATGC 2 cut(s) 25, 269
MwoI GCNNNNNNNGC 3 cut(s) 11, 59, 243
NciI CCSGG 1 cut(s) 234
NdeII GATC 1 cut(s) 483
NlaIII CATG 3 cut(s) 25, 490, 529
NlaIV GGNNCC 1 cut(s) 574
NmuCI GTSAC 1 cut(s) 562
NsiI ATGCAT 1 cut(s) 27
PagI TCATGA 1 cut(s) 486
PctI GAATGC 2 cut(s) 25, 269
PfeI GAWTC 3 cut(s) 294, 390, 439
PkrI GCNGC 1 cut(s) 7
PleI GAGTC 2 cut(s) 464, 475
PpsI GAGTC 2 cut(s) 464, 475
Psp124BI GAGCTC 1 cut(s) 507
PspN4I GGNNCC 1 cut(s) 574
PspPI GGNCC 1 cut(s) 278
PstNI CAGNNNCTG 1 cut(s) 500
SacI GAGCTC 1 cut(s) 507
SaqAI TTAA 1 cut(s) 450
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 1 cut(s) 483
Sau96I GGNCC 1 cut(s) 278
SchI GAGTC 2 cut(s) 465, 476
ScrFI CCNGG 1 cut(s) 234
SduI GDGCHC 3 cut(s) 114, 507, 577
SfaNI GCATC 4 cut(s) 17, 197, 440, 487
SpeI ACTAGT 1 cut(s) 410
Sse9I AATT 2 cut(s) 43, 196
SsiI CCGC 3 cut(s) 62, 338, 570
SspMI CTAG 3 cut(s) 38, 411, 578
SstI GAGCTC 1 cut(s) 507
StyD4I CCNGG 1 cut(s) 232
StyI CCWWGG 4 cut(s) 48, 147, 351, 403
TaaI ACNGT 5 cut(s) 109, 178, 302, 386, 519
TaqI TCGA 1 cut(s) 173
TasI AATT 2 cut(s) 43, 196
TfiI GAWTC 3 cut(s) 294, 390, 439
Tru1I TTAA 1 cut(s) 450
Tru9I TTAA 1 cut(s) 450
TscAI CASTG 4 cut(s) 280, 288, 432, 559
TseFI GTSAC 1 cut(s) 562
TseI GCWGC 1 cut(s) 5
Tsp45I GTSAC 1 cut(s) 562
TspDTI ATGAA 1 cut(s) 10
TspRI CASTG 4 cut(s) 280, 288, 432, 559
VneI GTGCAC 1 cut(s) 110
XapI RAATTY 1 cut(s) 196
XmiI GTMKAC 1 cut(s) 304
XspI CTAG 3 cut(s) 38, 411, 578
Zsp2I ATGCAT 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.