AT4G14960

Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Reverse (-)
8548417 .. 8550495
2079 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G14960.2

Sequence Viewer

Length: 1284 bp
ATGAGAGAGTGCATTTCGATCCACATTGGTCAGGCTGGTATTCAAGTCGGAAATGCTTGCTGGGAGCTTTACTGTCTTGAACATGGCATTCAGCCTGATGGCCAGATGCCTGGTGACAAGACTGTTGGTGGAGGTGATGATGCTTTCAACACCTTCTTCAGTGAAACCGGTGCAGGTAAGCACGTCCCACGTGCTGTCTTTGTTGATCTTGAGCCAACTGTGATCGACGAGGTCAGGACTGGTACTTACCGTCAGCTTTTCCACCCTGAACAACTCATCAGTGGTAAAGAAGACGCTGCTAACAATTTCGCCCGTGGTCATTACACCATTGGGAAAGAGATTGTTGATCTCTGCTTGGACCGGATCAGAAAGCTCGCTGATAACTGTACTGGTCTTCAAGGATTCCTTGTTTTCAACGCTGTTGGTGGTGGGACTGGATCTGGTCTTGGATCTCTTCTCCTTGAGAGACTTTCTGTTGACTATGGGAAAAAGTCCAAGTTGGGTTTCACTGTTTACCCATCTCCACAGGTGTCTACCTCTGTGGTTGAGCCTTACAACAGTGTCCTCTCCACTCACTCTCTCTTGGAACACACTGATGTCTCCATCCTCCTCGACAATGAAGCTATCTATGACATCTGTAGACGCTCCCTTAACATTGAGAGACCTACCTACACCAACCTCAACCGTCTCGTCTCTCAGGTTATTTCTTCCTTGACTGCTTCTCTGAGGTTCGATGGTGCCTTGAATGTTGATGTTACTGAGTTCCAAACCAACTTGGTTCCATACCCAAGGATCCACTTCATGCTTTCGTCCTATGCACCAGTCATCTCCGCGGAGAAGGCCTTCCATGAGCAACTCTCAGTTGCTGAGATCACGAACAGTGCCTTTGAACCTGCTTCCATGATGGCAAAGTGTGACCCGCGACATGGAAAGTACATGGCTTGCTGTTTGATGTACCGTGGTGATGTAGTCCCCAAGGATGTGAACGCAGCGGTTGGCACCATCAAGACCAAGCGAACTATTCAGTTTGTTGACTGGTGTCCTACTGGATTCAAGTGTGGTATCAACTACCAGCCACCAACTGTTGTTCCTGGAGGTGATCTTGCTAAAGTCCAGAGAGCTGTTTGTATGATCTCAAACTCAACCAGTGTTGCTGAGAAGGAGAATTCTCAGAGGCTCGTGAGGATCTTGCAGCATTGGAGAAGGATTATGAAGAGGTCGGTGCTGAAGGTGGTGACGATGAGGATGATGAAGGAGAGGAATACTAAGAAGAATGTTTCTTAA

Protein Analysis

427

Amino Acids

47.23

Weight (kDa)

8.37

Isoelectric Point (pI)

36.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tubulin PF00091 3 - 213 4.5e-63 Tubulin/FtsZ family, GTPase domain
Tubulin_C PF03953 263 - 392 1.9e-51 Tubulin C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000549)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04820 AT1G50010 AT4G14960 AT4G14960
fragaria_vesca FvH4_1g18660 FvH4_2g03140 FvH4_5g33560 FvH4_6g48940 FvH4_6g48940
malus_domestica MD02G1204800.v1.1 MD05G1106800.v1.1 MD08G1210600.v1.1 MD09G1049500.v1.1 MD10G1111600.v1.1 MD15G1398700.v1.1 MD17G1049700.v1.1
prunus_persica Prupe.1G542600_v2.0.a1 Prupe.3G269300_v2.0.a1 Prupe.6G212700_v2.0.a1 Prupe.8G150900_v2.0.a1
pyrus_communis pycom05g10370 pycom08g18150 pycom10g09640 pycom10g09660 pycom111g04050 pycom15g35470 pycom17g04460
rosa_chinensis RchiOBHm_Chr2g0109481 RchiOBHm_Chr2g0168751 RchiOBHm_Chr3g0453071 RchiOBHm_Chr3g0460741 RchiOBHm_Chr3g0467971 RchiOBHm_Chr4g0400901 RchiOBHm_Chr6g0248011 RchiOBHm_Chr7g0232381 RchiOBHm_Chr7g0238121
rosa_laevigata RLG00000001350 RLG00000009167 RLG00000015163 RLG00000017708 RLG00000017741 RLG00000021807 RLG00000023849 RLG00000026518
rosa_multiflora Rmu_sc0000332.1_g000021 Rmu_sc0000332.1_g000029 Rmu_sc0002416.1_g000007 Rmu_sc0002611.1_g000001 Rmu_sc0003113.1_g000016 Rmu_sc0004780.1_g000001 Rmu_sc0004805.1_g000035 Rmu_sc0010633.1_g000010 Rmu_sc0011069.1_g000003 Rmu_sc0016170.1_g000002 Rmu_sc0025757.1_g000003 Rmu_ssc0000484.1_g000003
rosa_roxburghii Rroxscaffold_2G00134200 Rroxscaffold_4G00321030 Rroxscaffold_7G00213500
rosa_rugosa Rorug01G0283100 Rorug02G0160500 Rorug02G0535300 Rorug04G0027000 Rorug04G0328100 Rorug05G0388700 Rorug05G0530200 Rorug06G0489200 Rorug07G0104900 Rorug07G0209400 Rorug07G0274500
rosa_samantha Rh2BG222800 Rh2BG618900 Rh2CG214400 Rh2CG587200 Rh6BG040200 Rh6CG206500 Rh6DG035600 Rh7BG401600 Rh7BG401700 Rh7DG418400
rosa_wichuraiana Rw2G050240 Rw6G003920 Rw7G035430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 164, 901
AccB1I GGYRCC 2 cut(s) 737, 998
AccI GTMKAC 2 cut(s) 533, 640
AccII CGCG 2 cut(s) 833, 922
AciI CCGC 4 cut(s) 831, 833, 920, 992
AclWI GGATC 7 cut(s) 13, 371, 445, 457, 787, 800, 1193
AcoI YGGCCR 1 cut(s) 100
AcsI RAATTY 1 cut(s) 1165
AcuI CTGAAG 2 cut(s) 142, 1247
AcvI CACGTG 1 cut(s) 191
AfaI GTAC 4 cut(s) 244, 388, 935, 956
AfiI CCNNNNNNNGG 1 cut(s) 926
AgeI ACCGGT 1 cut(s) 167
AgsI TTSAA 8 cut(s) 44, 80, 148, 398, 415, 745, 890, 1054
AjiI CACGTC 1 cut(s) 184
AjnI CCWGG 2 cut(s) 109, 1090
AjuI GAANNNNNNNTTGG 2 cut(s) 488, 520
AluBI AGCT 5 cut(s) 67, 256, 373, 623, 1121
AluI AGCT 5 cut(s) 67, 256, 373, 623, 1121
Alw26I GTCTC 5 cut(s) 460, 604, 655, 692, 697
AlwI GGATC 7 cut(s) 13, 371, 445, 457, 787, 800, 1193
AlwNI CAGNNNCTG 1 cut(s) 866
AoxI GGCC 2 cut(s) 100, 840
ApeKI GCWGC 3 cut(s) 296, 989, 1192
ApoI RAATTY 1 cut(s) 1165
AsiGI ACCGGT 1 cut(s) 167
Asp700I GAANNNNTTC 1 cut(s) 842
AspS9I GGNCC 1 cut(s) 358
AsuHPI GGTGA 5 cut(s) 125, 146, 974, 1109, 1246
AvaII GGWCC 1 cut(s) 358
BalI TGGCCA 1 cut(s) 102
BamHI GGATCC 1 cut(s) 792
BanI GGYRCC 2 cut(s) 737, 998
BauI CACGAG 1 cut(s) 1178
BbrPI CACGTG 1 cut(s) 191
BbsI GAAGAC 2 cut(s) 297, 386
BbvI GCAGC 3 cut(s) 283, 1001, 1204
BccI CCATC 6 cut(s) 92, 526, 611, 728, 898, 1010
BciT130I CCWGG 2 cut(s) 111, 1092
BcoDI GTCTC 5 cut(s) 460, 604, 655, 692, 697
BfmI CTRYAG 1 cut(s) 637
BfuAI ACCTGC 2 cut(s) 164, 901
BisI GCNGC 3 cut(s) 297, 990, 1193
BlsI GCNGC 3 cut(s) 298, 991, 1194
Bme1390I CCNGG 2 cut(s) 111, 1092
Bme18I GGWCC 1 cut(s) 358
BmgBI CACGTC 1 cut(s) 184
BmgT120I GGNCC 1 cut(s) 358
BmiI GGNNCC 4 cut(s) 739, 780, 794, 1000
BmrFI CCNGG 2 cut(s) 111, 1092
BmsI GCATC 2 cut(s) 96, 130
BoxI GACNNNNGTC 1 cut(s) 1038
BpiI GAAGAC 2 cut(s) 297, 386
BplI GAGNNNNNCTC 2 cut(s) 842, 874
BpmI CTGGAG 1 cut(s) 1113
BpuEI CTTGAG 2 cut(s) 230, 482
BsaAI YACGTR 1 cut(s) 191
BsaI GGTCTC 1 cut(s) 655
BsaJI CCNNGG 5 cut(s) 313, 788, 831, 958, 975
BsaWI WCCGGW 2 cut(s) 167, 360
Bsc4I CCNNNNNNNGG 1 cut(s) 926
Bse118I RCCGGY 1 cut(s) 167
Bse1I ACTGG 7 cut(s) 244, 394, 439, 821, 1040, 1051, 1146
BseBI CCWGG 2 cut(s) 111, 1092
BseDI CCNNGG 5 cut(s) 313, 788, 831, 958, 975
BseGI GGATG 3 cut(s) 603, 985, 1251
BseLI CCNNNNNNNGG 1 cut(s) 926
BseMII CTCAG 7 cut(s) 710, 716, 750, 858, 873, 1146, 1184
BseNI ACTGG 7 cut(s) 244, 394, 439, 821, 1040, 1051, 1146
BseRI GAGGAG 1 cut(s) 599
BseXI GCAGC 3 cut(s) 283, 1001, 1204
BseYI CCCAGC 1 cut(s) 60
BsgI GTGCAG 1 cut(s) 192
Bsh1236I CGCG 2 cut(s) 833, 922
BshFI GGCC 2 cut(s) 102, 842
BshNI GGYRCC 2 cut(s) 737, 998
BshTI ACCGGT 1 cut(s) 167
BsiSI CCGG 2 cut(s) 168, 361
BslFI GGGAC 3 cut(s) 170, 445, 956
BslI CCNNNNNNNGG 1 cut(s) 926
BsmAI GTCTC 5 cut(s) 460, 604, 655, 692, 697
BsmBI CGTCTC 2 cut(s) 692, 697
BsmFI GGGAC 3 cut(s) 170, 445, 956
BsmI GAATGC 1 cut(s) 87
BsnI GGCC 2 cut(s) 102, 842
Bso31I GGTCTC 1 cut(s) 655
BspACI CCGC 4 cut(s) 831, 833, 920, 992
BspANI GGCC 2 cut(s) 102, 842
BspCNI CTCAG 7 cut(s) 709, 717, 751, 859, 872, 1147, 1183
BspFNI CGCG 2 cut(s) 833, 922
BspLI GGNNCC 4 cut(s) 739, 780, 794, 1000
BspMI ACCTGC 2 cut(s) 164, 901
BspPI GGATC 7 cut(s) 13, 371, 445, 457, 787, 800, 1193
BspT107I GGYRCC 2 cut(s) 737, 998
BspTNI GGTCTC 1 cut(s) 655
BsrFI RCCGGY 1 cut(s) 167
BsrI ACTGG 7 cut(s) 244, 394, 439, 821, 1040, 1051, 1146
BssAI RCCGGY 1 cut(s) 167
BssECI CCNNGG 5 cut(s) 313, 788, 831, 958, 975
BssSI CACGAG 1 cut(s) 1178
BssT1I CCWWGG 2 cut(s) 788, 975
Bst2BI CACGAG 1 cut(s) 1178
Bst2UI CCWGG 2 cut(s) 111, 1092
Bst6I CTCTTC 2 cut(s) 459, 1208
BstBAI YACGTR 1 cut(s) 191
BstC8I GCNNGC 3 cut(s) 58, 375, 943
BstDEI CTNAG 8 cut(s) 696, 725, 759, 859, 867, 1155, 1170, 1266
BstDSI CCRYGG 3 cut(s) 313, 831, 958
BstF5I GGATG 3 cut(s) 603, 985, 1251
BstFNI CGCG 2 cut(s) 833, 922
BstMAI GTCTC 5 cut(s) 460, 604, 655, 692, 697
BstMWI GCNNNNNNNGC 1 cut(s) 839
BstNI CCWGG 2 cut(s) 111, 1092
BstPAI GACNNNNGTC 1 cut(s) 1038
BstSCI CCNGG 2 cut(s) 109, 1090
BstSFI CTRYAG 1 cut(s) 637
BstUI CGCG 2 cut(s) 833, 922
BstV1I GCAGC 3 cut(s) 283, 1001, 1204
BstV2I GAAGAC 2 cut(s) 297, 386
BstX2I RGATCY 4 cut(s) 437, 449, 792, 1185
BstXI CCANNNNNNTGG 1 cut(s) 110
BstYI RGATCY 4 cut(s) 437, 449, 792, 1185
BsuRI GGCC 2 cut(s) 102, 842
BtgI CCRYGG 3 cut(s) 313, 831, 958
BtrI CACGTC 1 cut(s) 184
BtsCI GGATG 3 cut(s) 603, 985, 1251
BtsIMutI CAGTG 7 cut(s) 166, 286, 507, 565, 591, 886, 1153
BveI ACCTGC 2 cut(s) 164, 901
Cac8I GCNNGC 3 cut(s) 58, 375, 943
CaiI CAGNNNCTG 1 cut(s) 866
Cfr10I RCCGGY 1 cut(s) 167
Cfr13I GGNCC 1 cut(s) 358
Cfr42I CCGCGG 1 cut(s) 834
CseI GACGC 2 cut(s) 302, 651
Csp6I GTAC 4 cut(s) 243, 387, 934, 955
CspAI ACCGGT 1 cut(s) 167
CviAII CATG 6 cut(s) 83, 802, 848, 901, 926, 937
CviQI GTAC 4 cut(s) 243, 387, 934, 955
DdeI CTNAG 8 cut(s) 696, 725, 759, 859, 867, 1155, 1170, 1266
EaeI YGGCCR 1 cut(s) 100
Eam1104I CTCTTC 2 cut(s) 459, 1208
EarI CTCTTC 2 cut(s) 459, 1208
Eco130I CCWWGG 2 cut(s) 788, 975
Eco147I AGGCCT 1 cut(s) 842
Eco31I GGTCTC 1 cut(s) 655
Eco47I GGWCC 1 cut(s) 358
Eco57I CTGAAG 2 cut(s) 142, 1247
Eco72I CACGTG 1 cut(s) 191
EcoRI GAATTC 1 cut(s) 1165
EcoRII CCWGG 2 cut(s) 109, 1090
EcoT14I CCWWGG 2 cut(s) 788, 975
ErhI CCWWGG 2 cut(s) 788, 975
Esp3I CGTCTC 2 cut(s) 692, 697
FaeI CATG 6 cut(s) 86, 805, 851, 904, 929, 940
FalI AAGNNNNNCTT 2 cut(s) 390, 422
FaqI GGGAC 3 cut(s) 170, 445, 956
FatI CATG 6 cut(s) 82, 801, 847, 900, 925, 936
FauI CCCGC 1 cut(s) 927
FblI GTMKAC 2 cut(s) 533, 640
Fnu4HI GCNGC 3 cut(s) 297, 990, 1193
FokI GGATG 3 cut(s) 590, 992, 1258
Fsp4HI GCNGC 3 cut(s) 297, 990, 1193
GluI GCNGC 3 cut(s) 297, 990, 1193
GsaI CCCAGC 1 cut(s) 64
GsuI CTGGAG 1 cut(s) 1113
HaeIII GGCC 2 cut(s) 102, 842
HapII CCGG 2 cut(s) 168, 361
HgaI GACGC 2 cut(s) 302, 651
Hin1II CATG 6 cut(s) 86, 805, 851, 904, 929, 940
HincII GTYRAC 2 cut(s) 478, 1033
HindII GTYRAC 2 cut(s) 478, 1033
HinfI GANTC 2 cut(s) 402, 1050
HpaII CCGG 2 cut(s) 168, 361
HphI GGTGA 5 cut(s) 125, 146, 974, 1109, 1246
Hpy166II GTNNAC 6 cut(s) 478, 514, 534, 641, 985, 1033
Hpy188I TCNGA 4 cut(s) 50, 368, 726, 1173
Hpy188III TCNNGA 7 cut(s) 77, 209, 235, 874, 1006, 1114, 1180
Hpy8I GTNNAC 6 cut(s) 478, 514, 534, 641, 985, 1033
Hpy99I CGWCG 1 cut(s) 230
HpyAV CCTTC 7 cut(s) 163, 832, 853, 1153, 1197, 1222, 1246
HpyCH4IV ACGT 2 cut(s) 183, 190
HpyCH4V TGCA 4 cut(s) 12, 173, 818, 1192
HpyF10VI GCNNNNNNNGC 1 cut(s) 839
HpyF3I CTNAG 8 cut(s) 696, 725, 759, 859, 867, 1155, 1170, 1266
HpySE526I ACGT 2 cut(s) 183, 190
Hsp92II CATG 6 cut(s) 86, 805, 851, 904, 929, 940
KspI CCGCGG 1 cut(s) 834
LmnI GCTCC 2 cut(s) 64, 650
Lsp1109I GCAGC 3 cut(s) 283, 1001, 1204
LweI GCATC 2 cut(s) 96, 130
MaeII ACGT 2 cut(s) 183, 190
MaeIII GTNAC 4 cut(s) 113, 754, 914, 1234
MboII GAAGA 7 cut(s) 148, 302, 386, 446, 699, 1225, 1282
MflI RGATCY 4 cut(s) 437, 449, 792, 1185
MlsI TGGCCA 1 cut(s) 102
MluCI AATT 2 cut(s) 304, 1165
MluNI TGGCCA 1 cut(s) 102
MmeI TCCRAC 1 cut(s) 28
Mox20I TGGCCA 1 cut(s) 102
MroXI GAANNNNTTC 1 cut(s) 842
MscI TGGCCA 1 cut(s) 102
MseI TTAA 2 cut(s) 651, 1282
MslI CAYNNNNRTG 1 cut(s) 594
Msp20I TGGCCA 1 cut(s) 102
MspA1I CMGCKG 2 cut(s) 833, 992
MspI CCGG 2 cut(s) 168, 361
MspR9I CCNGG 2 cut(s) 111, 1092
Mva1269I GAATGC 1 cut(s) 87
MvaI CCWGG 2 cut(s) 111, 1092
MvnI CGCG 2 cut(s) 833, 922
MwoI GCNNNNNNNGC 1 cut(s) 839
NlaIII CATG 6 cut(s) 86, 805, 851, 904, 929, 940
NlaIV GGNNCC 4 cut(s) 739, 780, 794, 1000
NmuCI GTSAC 3 cut(s) 113, 914, 1234
PceI AGGCCT 1 cut(s) 842
PctI GAATGC 1 cut(s) 87
PdmI GAANNNNTTC 1 cut(s) 842
PfeI GAWTC 2 cut(s) 402, 1050
PflFI GACNNNGTC 1 cut(s) 230
PfoI TCCNGGA 1 cut(s) 1090
PinAI ACCGGT 1 cut(s) 167
PkrI GCNGC 3 cut(s) 298, 991, 1194
PmaCI CACGTG 1 cut(s) 191
PmlI CACGTG 1 cut(s) 191
Ppu21I YACGTR 1 cut(s) 191
PshAI GACNNNNGTC 1 cut(s) 1038
Psp6I CCWGG 2 cut(s) 109, 1090
PspCI CACGTG 1 cut(s) 191
PspFI CCCAGC 1 cut(s) 60
PspGI CCWGG 2 cut(s) 109, 1090
PspN4I GGNNCC 4 cut(s) 739, 780, 794, 1000
PspPI GGNCC 1 cut(s) 358
PstNI CAGNNNCTG 1 cut(s) 866
PsuI RGATCY 4 cut(s) 437, 449, 792, 1185
PsyI GACNNNGTC 1 cut(s) 230
RsaI GTAC 4 cut(s) 244, 388, 935, 956
RsaNI GTAC 4 cut(s) 243, 387, 934, 955
RseI CAYNNNNRTG 1 cut(s) 594
SacII CCGCGG 1 cut(s) 834
SaqAI TTAA 2 cut(s) 651, 1282
SatI GCNGC 3 cut(s) 297, 990, 1193
Sau96I GGNCC 1 cut(s) 358
ScrFI CCNGG 2 cut(s) 111, 1092
SfaNI GCATC 2 cut(s) 96, 130
SfcI CTRYAG 1 cut(s) 637
Sfr303I CCGCGG 1 cut(s) 834
SgrBI CCGCGG 1 cut(s) 834
SinI GGWCC 1 cut(s) 358
SmiMI CAYNNNNRTG 1 cut(s) 594
SmlI CTYRAG 2 cut(s) 209, 461
SmoI CTYRAG 2 cut(s) 209, 461
Sse9I AATT 2 cut(s) 304, 1165
SseBI AGGCCT 1 cut(s) 842
SsiI CCGC 4 cut(s) 831, 833, 920, 992
StuI AGGCCT 1 cut(s) 842
StyD4I CCNGG 2 cut(s) 109, 1090
StyI CCWWGG 2 cut(s) 788, 975
TaiI ACGT 2 cut(s) 186, 193
TaqI TCGA 4 cut(s) 17, 225, 612, 732
TasI AATT 2 cut(s) 304, 1165
TatI WGTACW 2 cut(s) 386, 933
TfiI GAWTC 2 cut(s) 402, 1050
Tru1I TTAA 2 cut(s) 651, 1282
Tru9I TTAA 2 cut(s) 651, 1282
TscAI CASTG 7 cut(s) 166, 286, 514, 565, 598, 886, 1153
TseFI GTSAC 3 cut(s) 113, 914, 1234
TseI GCWGC 3 cut(s) 296, 989, 1192
Tsp45I GTSAC 3 cut(s) 113, 914, 1234
TspDTI ATGAA 4 cut(s) 633, 790, 1226, 1265
TspRI CASTG 7 cut(s) 166, 286, 514, 565, 598, 886, 1153
Tth111I GACNNNGTC 1 cut(s) 230
VpaK11BI GGWCC 1 cut(s) 358
XapI RAATTY 1 cut(s) 1165
XmiI GTMKAC 2 cut(s) 533, 640
XmnI GAANNNNTTC 1 cut(s) 842
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.