RchiOBHm_Chr7g0238121

Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Forward (+)
63473200 .. 63473358
159 bp
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UTR
Exon/CDS
Intron
PRQ21340

Sequence Viewer

Length: 159 bp
ATGCCAATCGATAAGGCCGTCGGCAGTGGCGACGACACCTTCAACACCTTCTTCTACGAGACCGGCGCCGGCAAGCACGTCCCACACGCCATGTTCGTCGACCTTGAGCCCACCGTCAATCACCAATTTGGTACCAACCATCGTCAATCACCGATCTAA

Protein Analysis

52

Amino Acids

5.76

Weight (kDa)

5.61

Isoelectric Point (pI)

34.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000549)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04820 AT1G50010 AT4G14960 AT4G14960
fragaria_vesca FvH4_1g18660 FvH4_2g03140 FvH4_5g33560 FvH4_6g48940 FvH4_6g48940
malus_domestica MD02G1204800.v1.1 MD05G1106800.v1.1 MD08G1210600.v1.1 MD09G1049500.v1.1 MD10G1111600.v1.1 MD15G1398700.v1.1 MD17G1049700.v1.1
prunus_persica Prupe.1G542600_v2.0.a1 Prupe.3G269300_v2.0.a1 Prupe.6G212700_v2.0.a1 Prupe.8G150900_v2.0.a1
pyrus_communis pycom05g10370 pycom08g18150 pycom10g09640 pycom10g09660 pycom111g04050 pycom15g35470 pycom17g04460
rosa_chinensis RchiOBHm_Chr2g0109481 RchiOBHm_Chr2g0168751 RchiOBHm_Chr3g0453071 RchiOBHm_Chr3g0460741 RchiOBHm_Chr3g0467971 RchiOBHm_Chr4g0400901 RchiOBHm_Chr6g0248011 RchiOBHm_Chr7g0232381 RchiOBHm_Chr7g0238121
rosa_laevigata RLG00000001350 RLG00000009167 RLG00000015163 RLG00000017708 RLG00000017741 RLG00000021807 RLG00000023849 RLG00000026518
rosa_multiflora Rmu_sc0000332.1_g000021 Rmu_sc0000332.1_g000029 Rmu_sc0002416.1_g000007 Rmu_sc0002611.1_g000001 Rmu_sc0003113.1_g000016 Rmu_sc0004780.1_g000001 Rmu_sc0004805.1_g000035 Rmu_sc0010633.1_g000010 Rmu_sc0011069.1_g000003 Rmu_sc0016170.1_g000002 Rmu_sc0025757.1_g000003 Rmu_ssc0000484.1_g000003
rosa_roxburghii Rroxscaffold_2G00134200 Rroxscaffold_4G00321030 Rroxscaffold_7G00213500
rosa_rugosa Rorug01G0283100 Rorug02G0160500 Rorug02G0535300 Rorug04G0027000 Rorug04G0328100 Rorug05G0388700 Rorug05G0530200 Rorug06G0489200 Rorug07G0104900 Rorug07G0209400 Rorug07G0274500
rosa_samantha Rh2BG222800 Rh2BG618900 Rh2CG214400 Rh2CG587200 Rh6BG040200 Rh6CG206500 Rh6DG035600 Rh7BG401600 Rh7BG401700 Rh7DG418400
rosa_wichuraiana Rw2G050240 Rw6G003920 Rw7G035430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 131
AccB1I GGYRCC 2 cut(s) 65, 131
AccI GTMKAC 1 cut(s) 99
AcyI GRCGYC 1 cut(s) 66
AfaI GTAC 1 cut(s) 133
AgsI TTSAA 1 cut(s) 43
AjiI CACGTC 1 cut(s) 79
Alw26I GTCTC 1 cut(s) 53
AoxI GGCC 1 cut(s) 15
Asp718I GGTACC 1 cut(s) 131
AspLEI GCGC 1 cut(s) 68
AsuHPI GGTGA 2 cut(s) 113, 141
BanI GGYRCC 2 cut(s) 65, 131
BanII GRGCYC 1 cut(s) 111
BccI CCATC 1 cut(s) 147
BceAI ACGGC 1 cut(s) 2
BcoDI GTCTC 1 cut(s) 53
BfoI RGCGCY 1 cut(s) 69
BmgBI CACGTC 1 cut(s) 79
BmiI GGNNCC 2 cut(s) 67, 133
BpuEI CTTGAG 1 cut(s) 125
Bsa29I ATCGAT 1 cut(s) 9
BsaHI GRCGYC 1 cut(s) 66
BsaI GGTCTC 1 cut(s) 53
Bse118I RCCGGY 2 cut(s) 62, 68
BseCI ATCGAT 1 cut(s) 9
BshFI GGCC 1 cut(s) 17
BshNI GGYRCC 2 cut(s) 65, 131
BshVI ATCGAT 1 cut(s) 9
BsiSI CCGG 2 cut(s) 63, 69
BslFI GGGAC 1 cut(s) 65
BsmAI GTCTC 1 cut(s) 53
BsmFI GGGAC 1 cut(s) 65
BsnI GGCC 1 cut(s) 17
Bso31I GGTCTC 1 cut(s) 53
Bsp1286I GDGCHC 1 cut(s) 111
Bsp143I GATC 1 cut(s) 153
BspANI GGCC 1 cut(s) 17
BspDI ATCGAT 1 cut(s) 9
BspLI GGNNCC 2 cut(s) 67, 133
BspT107I GGYRCC 2 cut(s) 65, 131
BspTNI GGTCTC 1 cut(s) 53
BsrFI RCCGGY 2 cut(s) 62, 68
BssAI RCCGGY 2 cut(s) 62, 68
BssMI GATC 1 cut(s) 153
BssNI GRCGYC 1 cut(s) 66
Bst4CI ACNGT 1 cut(s) 115
BstACI GRCGYC 1 cut(s) 66
BstC8I GCNNGC 2 cut(s) 70, 74
BstH2I RGCGCY 1 cut(s) 69
BstHHI GCGC 1 cut(s) 68
BstKTI GATC 1 cut(s) 156
BstMAI GTCTC 1 cut(s) 53
BstMBI GATC 1 cut(s) 153
Bsu15I ATCGAT 1 cut(s) 9
BsuRI GGCC 1 cut(s) 17
BsuTUI ATCGAT 1 cut(s) 9
BtrI CACGTC 1 cut(s) 79
BtsI GCAGTG 1 cut(s) 31
BtsIMutI CAGTG 1 cut(s) 31
Cac8I GCNNGC 2 cut(s) 70, 74
CfoI GCGC 1 cut(s) 68
Cfr10I RCCGGY 2 cut(s) 62, 68
ClaI ATCGAT 1 cut(s) 9
Csp6I GTAC 1 cut(s) 132
CviAII CATG 1 cut(s) 91
CviJI RGCY 2 cut(s) 17, 109
CviKI_1 RGCY 2 cut(s) 17, 109
CviQI GTAC 1 cut(s) 132
DinI GGCGCC 1 cut(s) 67
DpnI GATC 1 cut(s) 155
DpnII GATC 1 cut(s) 153
Eco24I GRGCYC 1 cut(s) 111
Eco31I GGTCTC 1 cut(s) 53
EcoT38I GRGCYC 1 cut(s) 111
EgeI GGCGCC 1 cut(s) 67
EheI GGCGCC 1 cut(s) 67
FaeI CATG 1 cut(s) 94
FaiI YATR 1 cut(s) 92
FaqI GGGAC 1 cut(s) 65
FatI CATG 1 cut(s) 90
FblI GTMKAC 1 cut(s) 99
FriOI GRGCYC 1 cut(s) 111
GlaI GCGC 1 cut(s) 67
HaeII RGCGCY 1 cut(s) 69
HaeIII GGCC 1 cut(s) 17
HapII CCGG 2 cut(s) 63, 69
HhaI GCGC 1 cut(s) 68
Hin1I GRCGYC 1 cut(s) 66
Hin1II CATG 1 cut(s) 94
Hin6I GCGC 1 cut(s) 66
HinP1I GCGC 1 cut(s) 66
HincII GTYRAC 1 cut(s) 100
HindII GTYRAC 1 cut(s) 100
HpaII CCGG 2 cut(s) 63, 69
HphI GGTGA 2 cut(s) 113, 141
Hpy166II GTNNAC 1 cut(s) 100
Hpy8I GTNNAC 1 cut(s) 100
Hpy99I CGWCG 3 cut(s) 23, 35, 101
HpyAV CCTTC 2 cut(s) 49, 58
HpyCH4III ACNGT 1 cut(s) 115
HpyCH4IV ACGT 1 cut(s) 78
HpySE526I ACGT 1 cut(s) 78
Hsp92I GRCGYC 1 cut(s) 66
Hsp92II CATG 1 cut(s) 94
HspAI GCGC 1 cut(s) 66
KasI GGCGCC 1 cut(s) 65
KpnI GGTACC 1 cut(s) 135
KroI GCCGGC 1 cut(s) 68
KroNI GCCGGC 1 cut(s) 70
Kzo9I GATC 1 cut(s) 153
LpnPI CCDG 2 cut(s) 76, 82
MaeII ACGT 1 cut(s) 78
MalI GATC 1 cut(s) 155
MboI GATC 1 cut(s) 153
MboII GAAGA 1 cut(s) 43
MhlI GDGCHC 1 cut(s) 111
MluCI AATT 1 cut(s) 125
Mly113I GGCGCC 1 cut(s) 66
MroNI GCCGGC 1 cut(s) 68
MspI CCGG 2 cut(s) 63, 69
NaeI GCCGGC 1 cut(s) 70
NarI GGCGCC 1 cut(s) 66
NdeII GATC 1 cut(s) 153
NgoMIV GCCGGC 1 cut(s) 68
NlaIII CATG 1 cut(s) 94
NlaIV GGNNCC 2 cut(s) 67, 133
PcsI WCGNNNNNNNCGW 3 cut(s) 15, 27, 93
PdiI GCCGGC 1 cut(s) 70
PluTI GGCGCC 1 cut(s) 69
PspN4I GGNNCC 2 cut(s) 67, 133
RsaI GTAC 1 cut(s) 133
RsaNI GTAC 1 cut(s) 132
SalI GTCGAC 1 cut(s) 98
Sau3AI GATC 1 cut(s) 153
SduI GDGCHC 1 cut(s) 111
SetI ASST 4 cut(s) 41, 50, 81, 105
SfoI GGCGCC 1 cut(s) 67
SgeI CNNG 8 cut(s) 70, 75, 81, 85, 89, 98, 103, 116
SmlI CTYRAG 1 cut(s) 104
SmoI CTYRAG 1 cut(s) 104
Sse9I AATT 1 cut(s) 125
SspDI GGCGCC 1 cut(s) 65
TaaI ACNGT 1 cut(s) 115
TaiI ACGT 1 cut(s) 81
TaqI TCGA 2 cut(s) 9, 99
TasI AATT 1 cut(s) 125
TscAI CASTG 1 cut(s) 31
TspRI CASTG 1 cut(s) 31
XmiI GTMKAC 1 cut(s) 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.