RLG00000009167

Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000549
Physical Location & Seq
Reverse (-)
47988217 .. 47991464
3248 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009167

Sequence Viewer

Length: 660 bp
ATGTACTGCCTGATTTGCATTAGGAGGTTGAAAATTTTCAGGCTTTTAGTGTTTGGTGATTATATGCTTCTTTTATGTGCACCAGAAGATACCATTAAGGGTTGTGGAGATTTGTTGGTGCCAGAAGATGTAGGAGTTATTCGTTCTTCTGAAGGTGTTGCCCCATTGTTTCAAACTGGAAGCTCTAGTAGCTCAAATCTATTCAAGTTGCCAGCTGCTGTAGTCCTTGCAACTTTTGACAGTTATGGTGTTATCCCTTCTGTATCAAAGCTTGCACCTGGCCAAGAAGTGATTATCAAAATGGCCAGGCAGCTAGCACAAACTGATGAGCATTTTACGATCAAGGGCTTTTGTCCGGAAGGTCAGATGCCAAGTGACAAGACCGTCGGCTGCAGCGACAACGCCTTCAACACCTTCTTCTCCGAGACCGGCTCTGGCAAGTACGTCCCACGTGCCATCTTCGTCCACCTCGAGCGCACCGTCATCGACAAGGTCCGCACCGAAACCTACTGCCAGCTCTTCCACCCCGAACAGCTCATCTCCCCCAAGGAGGACGCTGCCAACAACTTCGCCTGTGGTCACTACACCATCGGCAAAGAGATCGTCGATCTCTACCTGGATCGGATCAGGAAGCTCGCTGATAACTGCACCGGGCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04145 ko04210 ko04530 ko04540 ko05130 map04145 map04210 map04530 map04540 map05130
Pfam Domains
Protein Families
Tubulin Tubulin_C

Protein Analysis

220

Amino Acids

24.17

Weight (kDa)

5.82

Isoelectric Point (pI)

43.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tubulin PF00091 122 - 217 5.7e-18 Tubulin/FtsZ family, GTPase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000549)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04820 AT1G50010 AT4G14960 AT4G14960
fragaria_vesca FvH4_1g18660 FvH4_2g03140 FvH4_5g33560 FvH4_6g48940 FvH4_6g48940
malus_domestica MD02G1204800.v1.1 MD05G1106800.v1.1 MD08G1210600.v1.1 MD09G1049500.v1.1 MD10G1111600.v1.1 MD15G1398700.v1.1 MD17G1049700.v1.1
prunus_persica Prupe.1G542600_v2.0.a1 Prupe.3G269300_v2.0.a1 Prupe.6G212700_v2.0.a1 Prupe.8G150900_v2.0.a1
pyrus_communis pycom05g10370 pycom08g18150 pycom10g09640 pycom10g09660 pycom111g04050 pycom15g35470 pycom17g04460
rosa_chinensis RchiOBHm_Chr2g0109481 RchiOBHm_Chr2g0168751 RchiOBHm_Chr3g0453071 RchiOBHm_Chr3g0460741 RchiOBHm_Chr3g0467971 RchiOBHm_Chr4g0400901 RchiOBHm_Chr6g0248011 RchiOBHm_Chr7g0232381 RchiOBHm_Chr7g0238121
rosa_laevigata RLG00000001350 RLG00000009167 RLG00000015163 RLG00000017708 RLG00000017741 RLG00000021807 RLG00000023849 RLG00000026518
rosa_multiflora Rmu_sc0000332.1_g000021 Rmu_sc0000332.1_g000029 Rmu_sc0002416.1_g000007 Rmu_sc0002611.1_g000001 Rmu_sc0003113.1_g000016 Rmu_sc0004780.1_g000001 Rmu_sc0004805.1_g000035 Rmu_sc0010633.1_g000010 Rmu_sc0011069.1_g000003 Rmu_sc0016170.1_g000002 Rmu_sc0025757.1_g000003 Rmu_ssc0000484.1_g000003
rosa_roxburghii Rroxscaffold_2G00134200 Rroxscaffold_4G00321030 Rroxscaffold_7G00213500
rosa_rugosa Rorug01G0283100 Rorug02G0160500 Rorug02G0535300 Rorug04G0027000 Rorug04G0328100 Rorug05G0388700 Rorug05G0530200 Rorug06G0489200 Rorug07G0104900 Rorug07G0209400 Rorug07G0274500
rosa_samantha Rh2BG222800 Rh2BG618900 Rh2CG214400 Rh2CG587200 Rh6BG040200 Rh6CG206500 Rh6DG035600 Rh7BG401600 Rh7BG401700 Rh7DG418400
rosa_wichuraiana Rw2G050240 Rw6G003920 Rw7G035430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 383
AccB1I GGYRCC 1 cut(s) 118
AccIII TCCGGA 1 cut(s) 355
AciI CCGC 1 cut(s) 496
AclWI GGATC 2 cut(s) 627, 632
AcoI YGGCCR 2 cut(s) 280, 303
AcsI RAATTY 1 cut(s) 33
AcuI CTGAAG 1 cut(s) 171
AcvI CACGTG 1 cut(s) 452
AfaI GTAC 2 cut(s) 5, 443
AfiI CCNNNNNNNGG 1 cut(s) 550
AgsI TTSAA 4 cut(s) 31, 173, 205, 409
AjnI CCWGG 3 cut(s) 277, 305, 615
AluBI AGCT 8 cut(s) 183, 192, 215, 271, 313, 517, 535, 634
AluI AGCT 8 cut(s) 183, 192, 215, 271, 313, 517, 535, 634
Alw21I GWGCWC 1 cut(s) 82
Alw26I GTCTC 1 cut(s) 419
Alw44I GTGCAC 1 cut(s) 78
AlwI GGATC 2 cut(s) 627, 632
AlwNI CAGNNNCTG 1 cut(s) 218
Ama87I CYCGRG 1 cut(s) 470
Aor13HI TCCGGA 1 cut(s) 355
AoxI GGCC 2 cut(s) 280, 303
ApaLI GTGCAC 1 cut(s) 78
ApeKI GCWGC 5 cut(s) 215, 310, 390, 393, 557
ApoI RAATTY 1 cut(s) 33
ArsI GACNNNNNNTTYG 2 cut(s) 588, 620
Asp700I GAANNNNTTC 1 cut(s) 35
AspLEI GCGC 1 cut(s) 477
AspS9I GGNCC 1 cut(s) 493
AsuC2I CCSGG 1 cut(s) 652
AsuHPI GGTGA 1 cut(s) 68
AsuNHI GCTAGC 1 cut(s) 313
AvaI CYCGRG 1 cut(s) 470
AvaII GGWCC 1 cut(s) 493
BaeGI GKGCMC 1 cut(s) 82
BalI TGGCCA 2 cut(s) 282, 305
BanI GGYRCC 1 cut(s) 118
BanII GRGCYC 1 cut(s) 657
BbrPI CACGTG 1 cut(s) 452
Bbv12I GWGCWC 1 cut(s) 82
BbvI GCAGC 5 cut(s) 202, 322, 377, 405, 544
BccI CCATC 2 cut(s) 464, 596
BcgI CGANNNNNNTGC 4 cut(s) 466, 500, 583, 617
BciT130I CCWGG 3 cut(s) 279, 307, 617
BcnI CCSGG 1 cut(s) 652
BcoDI GTCTC 1 cut(s) 419
BfaI CTAG 3 cut(s) 186, 314, 658
BfmI CTRYAG 2 cut(s) 219, 391
BisI GCNGC 5 cut(s) 216, 311, 391, 394, 558
BlsI GCNGC 5 cut(s) 217, 312, 392, 395, 559
Bme1390I CCNGG 4 cut(s) 279, 307, 617, 652
Bme18I GGWCC 1 cut(s) 493
BmeT110I CYCGRG 1 cut(s) 470
BmgT120I GGNCC 1 cut(s) 493
BmiI GGNNCC 1 cut(s) 120
BmrFI CCNGG 4 cut(s) 279, 307, 617, 652
BmsI GCATC 1 cut(s) 357
BmtI GCTAGC 1 cut(s) 317
BplI GAGNNNNNCTC 2 cut(s) 416, 448
BpuMI CCSGG 1 cut(s) 652
BsaAI YACGTR 1 cut(s) 452
BsaI GGTCTC 1 cut(s) 419
BsaJI CCNNGG 1 cut(s) 546
BsaWI WCCGGW 1 cut(s) 355
Bsc4I CCNNNNNNNGG 1 cut(s) 550
Bse118I RCCGGY 1 cut(s) 428
Bse1I ACTGG 1 cut(s) 181
BseAI TCCGGA 1 cut(s) 355
BseBI CCWGG 3 cut(s) 279, 307, 617
BseDI CCNNGG 1 cut(s) 546
BseLI CCNNNNNNNGG 1 cut(s) 550
BseNI ACTGG 1 cut(s) 181
BseSI GKGCMC 1 cut(s) 82
BseXI GCAGC 5 cut(s) 202, 322, 377, 405, 544
BsgI GTGCAG 1 cut(s) 631
BshFI GGCC 2 cut(s) 282, 305
BshNI GGYRCC 1 cut(s) 118
BsiHKAI GWGCWC 1 cut(s) 82
BsiHKCI CYCGRG 1 cut(s) 470
BsiSI CCGG 3 cut(s) 356, 429, 651
BslFI GGGAC 1 cut(s) 431
BslI CCNNNNNNNGG 1 cut(s) 550
BsmAI GTCTC 1 cut(s) 419
BsmFI GGGAC 1 cut(s) 431
BsnI GGCC 2 cut(s) 282, 305
Bso31I GGTCTC 1 cut(s) 419
BsoBI CYCGRG 1 cut(s) 470
Bsp1286I GDGCHC 2 cut(s) 82, 657
Bsp13I TCCGGA 1 cut(s) 355
Bsp143I GATC 5 cut(s) 339, 600, 607, 619, 624
BspACI CCGC 1 cut(s) 496
BspANI GGCC 2 cut(s) 282, 305
BspEI TCCGGA 1 cut(s) 355
BspLI GGNNCC 1 cut(s) 120
BspMAI CTGCAG 1 cut(s) 395
BspOI GCTAGC 1 cut(s) 317
BspPI GGATC 2 cut(s) 627, 632
BspQI GCTCTTC 1 cut(s) 524
BspT107I GGYRCC 1 cut(s) 118
BspTNI GGTCTC 1 cut(s) 419
BsrFI RCCGGY 1 cut(s) 428
BsrI ACTGG 1 cut(s) 181
BssAI RCCGGY 1 cut(s) 428
BssECI CCNNGG 1 cut(s) 546
BssMI GATC 5 cut(s) 339, 600, 607, 619, 624
BssT1I CCWWGG 1 cut(s) 546
Bst2UI CCWGG 3 cut(s) 279, 307, 617
Bst4CI ACNGT 3 cut(s) 242, 385, 481
Bst6I CTCTTC 1 cut(s) 524
BstBAI YACGTR 1 cut(s) 452
BstC8I GCNNGC 5 cut(s) 213, 273, 315, 515, 636
BstHHI GCGC 1 cut(s) 477
BstKTI GATC 5 cut(s) 342, 603, 610, 622, 627
BstMAI GTCTC 1 cut(s) 419
BstMBI GATC 5 cut(s) 339, 600, 607, 619, 624
BstMWI GCNNNNNNNGC 2 cut(s) 15, 189
BstNI CCWGG 3 cut(s) 279, 307, 617
BstSCI CCNGG 4 cut(s) 277, 305, 615, 650
BstSFI CTRYAG 2 cut(s) 219, 391
BstSLI GKGCMC 1 cut(s) 82
BstV1I GCAGC 5 cut(s) 202, 322, 377, 405, 544
BsuRI GGCC 2 cut(s) 282, 305
Cac8I GCNNGC 5 cut(s) 213, 273, 315, 515, 636
CaiI CAGNNNCTG 1 cut(s) 218
CfoI GCGC 1 cut(s) 477
Cfr10I RCCGGY 1 cut(s) 428
Cfr13I GGNCC 1 cut(s) 493
CseI GACGC 1 cut(s) 563
Csp6I GTAC 2 cut(s) 4, 442
CviQI GTAC 2 cut(s) 4, 442
DpnI GATC 5 cut(s) 341, 602, 609, 621, 626
DpnII GATC 5 cut(s) 339, 600, 607, 619, 624
DrdI GACNNNNNNGTC 1 cut(s) 383
DseDI GACNNNNNNGTC 1 cut(s) 383
EaeI YGGCCR 2 cut(s) 280, 303
Eam1104I CTCTTC 1 cut(s) 524
EarI CTCTTC 1 cut(s) 524
Eco130I CCWWGG 1 cut(s) 546
Eco24I GRGCYC 1 cut(s) 657
Eco31I GGTCTC 1 cut(s) 419
Eco47I GGWCC 1 cut(s) 493
Eco57I CTGAAG 1 cut(s) 171
Eco72I CACGTG 1 cut(s) 452
Eco88I CYCGRG 1 cut(s) 470
EcoRII CCWGG 3 cut(s) 277, 305, 615
EcoT14I CCWWGG 1 cut(s) 546
EcoT38I GRGCYC 1 cut(s) 657
ErhI CCWWGG 1 cut(s) 546
FaiI YATR 4 cut(s) 63, 65, 76, 246
FaqI GGGAC 1 cut(s) 431
Fnu4HI GCNGC 5 cut(s) 216, 311, 391, 394, 558
FriOI GRGCYC 1 cut(s) 657
Fsp4HI GCNGC 5 cut(s) 216, 311, 391, 394, 558
FspBI CTAG 3 cut(s) 186, 314, 658
GlaI GCGC 1 cut(s) 476
GluI GCNGC 5 cut(s) 216, 311, 391, 394, 558
HaeIII GGCC 2 cut(s) 282, 305
HapII CCGG 3 cut(s) 356, 429, 651
HgaI GACGC 1 cut(s) 563
HhaI GCGC 1 cut(s) 477
Hin6I GCGC 1 cut(s) 475
HinP1I GCGC 1 cut(s) 475
HindIII AAGCTT 1 cut(s) 269
HpaII CCGG 3 cut(s) 356, 429, 651
HphI GGTGA 1 cut(s) 68
Hpy166II GTNNAC 2 cut(s) 80, 466
Hpy188I TCNGA 4 cut(s) 151, 366, 424, 624
Hpy188III TCNNGA 2 cut(s) 356, 628
Hpy8I GTNNAC 2 cut(s) 80, 466
Hpy99I CGWCG 2 cut(s) 389, 608
HpyAV CCTTC 5 cut(s) 146, 267, 353, 415, 424
HpyCH4III ACNGT 3 cut(s) 242, 385, 481
HpyCH4IV ACGT 2 cut(s) 444, 451
HpyCH4V TGCA 6 cut(s) 18, 80, 230, 275, 393, 648
HpyF10VI GCNNNNNNNGC 2 cut(s) 15, 189
HpySE526I ACGT 2 cut(s) 444, 451
HspAI GCGC 1 cut(s) 475
Kpn2I TCCGGA 1 cut(s) 355
Kzo9I GATC 5 cut(s) 339, 600, 607, 619, 624
LguI GCTCTTC 1 cut(s) 524
Lsp1109I GCAGC 5 cut(s) 202, 322, 377, 405, 544
LweI GCATC 1 cut(s) 357
MaeI CTAG 3 cut(s) 186, 314, 658
MaeII ACGT 2 cut(s) 444, 451
MaeIII GTNAC 2 cut(s) 374, 578
MalI GATC 5 cut(s) 341, 602, 609, 621, 626
MboI GATC 5 cut(s) 339, 600, 607, 619, 624
MboII GAAGA 6 cut(s) 98, 137, 138, 409, 451, 511
MhlI GDGCHC 2 cut(s) 82, 657
MlsI TGGCCA 2 cut(s) 282, 305
MluCI AATT 1 cut(s) 33
MluNI TGGCCA 2 cut(s) 282, 305
MnlI CCTC 3 cut(s) 18, 479, 544
Mox20I TGGCCA 2 cut(s) 282, 305
MroI TCCGGA 1 cut(s) 355
MroXI GAANNNNTTC 1 cut(s) 35
MscI TGGCCA 2 cut(s) 282, 305
MseI TTAA 1 cut(s) 96
Msp20I TGGCCA 2 cut(s) 282, 305
MspA1I CMGCKG 1 cut(s) 215
MspI CCGG 3 cut(s) 356, 429, 651
MspR9I CCNGG 4 cut(s) 279, 307, 617, 652
MvaI CCWGG 3 cut(s) 279, 307, 617
MwoI GCNNNNNNNGC 2 cut(s) 15, 189
NciI CCSGG 1 cut(s) 652
NdeII GATC 5 cut(s) 339, 600, 607, 619, 624
NheI GCTAGC 1 cut(s) 313
NlaIV GGNNCC 1 cut(s) 120
NmuCI GTSAC 2 cut(s) 374, 578
PaeR7I CTCGAG 1 cut(s) 470
PciSI GCTCTTC 1 cut(s) 524
PcsI WCGNNNNNNNCGW 3 cut(s) 393, 468, 477
PdmI GAANNNNTTC 1 cut(s) 35
PflFI GACNNNGTC 1 cut(s) 491
PkrI GCNGC 5 cut(s) 217, 312, 392, 395, 559
PmaCI CACGTG 1 cut(s) 452
PmlI CACGTG 1 cut(s) 452
Ppu21I YACGTR 1 cut(s) 452
Psp6I CCWGG 3 cut(s) 277, 305, 615
PspCI CACGTG 1 cut(s) 452
PspGI CCWGG 3 cut(s) 277, 305, 615
PspN4I GGNNCC 1 cut(s) 120
PspPI GGNCC 1 cut(s) 493
PspXI VCTCGAGB 1 cut(s) 470
PstI CTGCAG 1 cut(s) 395
PstNI CAGNNNCTG 1 cut(s) 218
PsyI GACNNNGTC 1 cut(s) 491
PvuII CAGCTG 1 cut(s) 215
RsaI GTAC 2 cut(s) 5, 443
RsaNI GTAC 2 cut(s) 4, 442
SapI GCTCTTC 1 cut(s) 524
SaqAI TTAA 1 cut(s) 96
SatI GCNGC 5 cut(s) 216, 311, 391, 394, 558
Sau3AI GATC 5 cut(s) 339, 600, 607, 619, 624
Sau96I GGNCC 1 cut(s) 493
ScrFI CCNGG 4 cut(s) 279, 307, 617, 652
SduI GDGCHC 2 cut(s) 82, 657
SfaNI GCATC 1 cut(s) 357
SfcI CTRYAG 2 cut(s) 219, 391
Sfr274I CTCGAG 1 cut(s) 470
SinI GGWCC 1 cut(s) 493
SlaI CTCGAG 1 cut(s) 470
SmlI CTYRAG 1 cut(s) 470
SmoI CTYRAG 1 cut(s) 470
Sse9I AATT 1 cut(s) 33
SsiI CCGC 1 cut(s) 496
SspMI CTAG 3 cut(s) 186, 314, 658
StyD4I CCNGG 4 cut(s) 277, 305, 615, 650
StyI CCWWGG 1 cut(s) 546
TaaI ACNGT 3 cut(s) 242, 385, 481
TaiI ACGT 2 cut(s) 447, 454
TaqI TCGA 3 cut(s) 471, 486, 606
TasI AATT 1 cut(s) 33
TatI WGTACW 1 cut(s) 3
Tru1I TTAA 1 cut(s) 96
Tru9I TTAA 1 cut(s) 96
TseFI GTSAC 2 cut(s) 374, 578
TseI GCWGC 5 cut(s) 215, 310, 390, 393, 557
Tsp45I GTSAC 2 cut(s) 374, 578
Tth111I GACNNNGTC 1 cut(s) 491
VneI GTGCAC 1 cut(s) 78
VpaK11BI GGWCC 1 cut(s) 493
XapI RAATTY 1 cut(s) 33
XhoI CTCGAG 1 cut(s) 470
XmnI GAANNNNTTC 1 cut(s) 35
XspI CTAG 3 cut(s) 186, 314, 658
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.