Rorug05G0530200

Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Reverse (-)
71899182 .. 71899481
300 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0530200.1

Sequence Viewer

Length: 300 bp
ATGAGTTGGGGCATCTCAAGTTTGCAGCTCACCAATTTTTATCAGGTAACCCTTATGTTCAAAGCATTAGCAGCTATGCATGGATTAAAGCTTTGTTTGAGAGAAGGCTACAAAAATGTGGAGTTGGAGAGTGATGCGTCTAATGTCATCCTAGCTTTGAACAAAACAGGATTGGATTTAAGTGTTGAAGGAGCCATTTTTGATGAGATTCTTATGTTGATGCCAGAATTGGAAGCTTTGAAGTGGAGGACAATACATCGTGGTTGCAACCAGGCTGCTCATACTTTGGCAAGGTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

99

Amino Acids

11.13

Weight (kDa)

6.26

Isoelectric Point (pI)

33.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 22 - 98 4e-11 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000549)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04820 AT1G50010 AT4G14960 AT4G14960
fragaria_vesca FvH4_1g18660 FvH4_2g03140 FvH4_5g33560 FvH4_6g48940 FvH4_6g48940
malus_domestica MD02G1204800.v1.1 MD05G1106800.v1.1 MD08G1210600.v1.1 MD09G1049500.v1.1 MD10G1111600.v1.1 MD15G1398700.v1.1 MD17G1049700.v1.1
prunus_persica Prupe.1G542600_v2.0.a1 Prupe.3G269300_v2.0.a1 Prupe.6G212700_v2.0.a1 Prupe.8G150900_v2.0.a1
pyrus_communis pycom05g10370 pycom08g18150 pycom10g09640 pycom10g09660 pycom111g04050 pycom15g35470 pycom17g04460
rosa_chinensis RchiOBHm_Chr2g0109481 RchiOBHm_Chr2g0168751 RchiOBHm_Chr3g0453071 RchiOBHm_Chr3g0460741 RchiOBHm_Chr3g0467971 RchiOBHm_Chr4g0400901 RchiOBHm_Chr6g0248011 RchiOBHm_Chr7g0232381 RchiOBHm_Chr7g0238121
rosa_laevigata RLG00000001350 RLG00000009167 RLG00000015163 RLG00000017708 RLG00000017741 RLG00000021807 RLG00000023849 RLG00000026518
rosa_multiflora Rmu_sc0000332.1_g000021 Rmu_sc0000332.1_g000029 Rmu_sc0002416.1_g000007 Rmu_sc0002611.1_g000001 Rmu_sc0003113.1_g000016 Rmu_sc0004780.1_g000001 Rmu_sc0004805.1_g000035 Rmu_sc0010633.1_g000010 Rmu_sc0011069.1_g000003 Rmu_sc0016170.1_g000002 Rmu_sc0025757.1_g000003 Rmu_ssc0000484.1_g000003
rosa_roxburghii Rroxscaffold_2G00134200 Rroxscaffold_4G00321030 Rroxscaffold_7G00213500
rosa_rugosa Rorug01G0283100 Rorug02G0160500 Rorug02G0535300 Rorug04G0027000 Rorug04G0328100 Rorug05G0388700 Rorug05G0530200 Rorug06G0489200 Rorug07G0104900 Rorug07G0209400 Rorug07G0274500
rosa_samantha Rh2BG222800 Rh2BG618900 Rh2CG214400 Rh2CG587200 Rh6BG040200 Rh6CG206500 Rh6DG035600 Rh7BG401600 Rh7BG401700 Rh7DG418400
rosa_wichuraiana Rw2G050240 Rw6G003920 Rw7G035430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 296
AgsI TTSAA 4 cut(s) 61, 160, 188, 241
AjnI CCWGG 1 cut(s) 270
AluBI AGCT 5 cut(s) 28, 74, 91, 155, 236
AluI AGCT 5 cut(s) 28, 74, 91, 155, 236
ApeKI GCWGC 3 cut(s) 25, 71, 275
AsuHPI GGTGA 1 cut(s) 22
BbvI GCAGC 3 cut(s) 37, 83, 262
BciT130I CCWGG 1 cut(s) 272
BfaI CTAG 1 cut(s) 152
BisI GCNGC 3 cut(s) 26, 72, 276
BlsI GCNGC 3 cut(s) 27, 73, 277
Bme1390I CCNGG 1 cut(s) 272
BmiI GGNNCC 1 cut(s) 193
BmrFI CCNGG 1 cut(s) 272
BmsI GCATC 3 cut(s) 21, 124, 210
BseBI CCWGG 1 cut(s) 272
BseGI GGATG 1 cut(s) 147
BseXI GCAGC 3 cut(s) 37, 83, 262
BspLI GGNNCC 1 cut(s) 193
Bst2UI CCWGG 1 cut(s) 272
BstEII GGTNACC 1 cut(s) 46
BstF5I GGATG 1 cut(s) 147
BstMWI GCNNNNNNNGC 1 cut(s) 71
BstNI CCWGG 1 cut(s) 272
BstPI GGTNACC 1 cut(s) 46
BstSCI CCNGG 1 cut(s) 270
BstV1I GCAGC 3 cut(s) 37, 83, 262
BtsCI GGATG 1 cut(s) 147
CseI GACGC 1 cut(s) 126
Csp6I GTAC 1 cut(s) 295
CviAII CATG 1 cut(s) 80
CviJI RGCY 8 cut(s) 28, 74, 91, 108, 155, 194, 236, 275
CviKI_1 RGCY 8 cut(s) 28, 74, 91, 108, 155, 194, 236, 275
CviQI GTAC 1 cut(s) 295
Eco91I GGTNACC 1 cut(s) 46
EcoO65I GGTNACC 1 cut(s) 46
EcoRII CCWGG 1 cut(s) 270
EcoT22I ATGCAT 1 cut(s) 81
FaeI CATG 1 cut(s) 83
FaiI YATR 5 cut(s) 56, 77, 81, 215, 282
FatI CATG 1 cut(s) 79
Fnu4HI GCNGC 3 cut(s) 26, 72, 276
FokI GGATG 1 cut(s) 134
Fsp4HI GCNGC 3 cut(s) 26, 72, 276
FspBI CTAG 1 cut(s) 152
GluI GCNGC 3 cut(s) 26, 72, 276
HgaI GACGC 1 cut(s) 126
Hin1II CATG 1 cut(s) 83
HindIII AAGCTT 2 cut(s) 89, 234
HinfI GANTC 1 cut(s) 208
HphI GGTGA 1 cut(s) 22
HpyAV CCTTC 2 cut(s) 98, 182
HpyCH4V TGCA 3 cut(s) 25, 79, 267
HpyF10VI GCNNNNNNNGC 1 cut(s) 71
Hsp92II CATG 1 cut(s) 83
LmnI GCTCC 1 cut(s) 191
LpnPI CCDG 5 cut(s) 29, 153, 237, 257, 284
Lsp1109I GCAGC 3 cut(s) 37, 83, 262
LweI GCATC 3 cut(s) 21, 124, 210
MaeI CTAG 1 cut(s) 152
MaeIII GTNAC 1 cut(s) 46
MluCI AATT 2 cut(s) 34, 227
MmeI TCCRAC 1 cut(s) 105
MnlI CCTC 1 cut(s) 240
Mph1103I ATGCAT 1 cut(s) 81
MseI TTAA 2 cut(s) 86, 179
MspR9I CCNGG 1 cut(s) 272
MvaI CCWGG 1 cut(s) 272
MwoI GCNNNNNNNGC 1 cut(s) 71
NlaIII CATG 1 cut(s) 83
NlaIV GGNNCC 1 cut(s) 193
NsiI ATGCAT 1 cut(s) 81
PfeI GAWTC 1 cut(s) 208
PkrI GCNGC 3 cut(s) 27, 73, 277
Psp6I CCWGG 1 cut(s) 270
PspEI GGTNACC 1 cut(s) 46
PspGI CCWGG 1 cut(s) 270
PspN4I GGNNCC 1 cut(s) 193
RsaI GTAC 1 cut(s) 296
RsaNI GTAC 1 cut(s) 295
SaqAI TTAA 2 cut(s) 86, 179
SatI GCNGC 3 cut(s) 26, 72, 276
ScrFI CCNGG 1 cut(s) 272
SetI ASST 7 cut(s) 30, 48, 76, 93, 157, 238, 296
SfaNI GCATC 3 cut(s) 21, 124, 210
SgeI CNNG 9 cut(s) 30, 56, 92, 164, 180, 236, 272, 283, 284
SmlI CTYRAG 1 cut(s) 16
SmoI CTYRAG 1 cut(s) 16
Sse9I AATT 2 cut(s) 34, 227
SspMI CTAG 1 cut(s) 152
StyD4I CCNGG 1 cut(s) 270
TasI AATT 2 cut(s) 34, 227
TfiI GAWTC 1 cut(s) 208
Tru1I TTAA 2 cut(s) 86, 179
Tru9I TTAA 2 cut(s) 86, 179
TseI GCWGC 3 cut(s) 25, 71, 275
XspI CTAG 1 cut(s) 152
Zsp2I ATGCAT 1 cut(s) 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.