RchiOBHm_Chr3g0467971

Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Reverse (-)
14109035 .. 14109244
210 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ43389

Sequence Viewer

Length: 210 bp
ATGCCGAGCTACAAGACAGTCGGTAGCGGCGACGACGCCTTCAACACCTTCTTCTCCAACTCCAAGACCGGCGTTGGCAAGCACATCCCACGCGTCATCTTCGTCGTCCTCGAGCCCACTGTCAAAGCTTATGAACAAACGATCAAAGCTTCTGAAATTTGTTCGATTGTTCCTCATCAAACCATGACCTCCATTGATCACCGATCCTAG

Protein Analysis

69

Amino Acids

7.6

Weight (kDa)

7.93

Isoelectric Point (pI)

35.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000549)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04820 AT1G50010 AT4G14960 AT4G14960
fragaria_vesca FvH4_1g18660 FvH4_2g03140 FvH4_5g33560 FvH4_6g48940 FvH4_6g48940
malus_domestica MD02G1204800.v1.1 MD05G1106800.v1.1 MD08G1210600.v1.1 MD09G1049500.v1.1 MD10G1111600.v1.1 MD15G1398700.v1.1 MD17G1049700.v1.1
prunus_persica Prupe.1G542600_v2.0.a1 Prupe.3G269300_v2.0.a1 Prupe.6G212700_v2.0.a1 Prupe.8G150900_v2.0.a1
pyrus_communis pycom05g10370 pycom08g18150 pycom10g09640 pycom10g09660 pycom111g04050 pycom15g35470 pycom17g04460
rosa_chinensis RchiOBHm_Chr2g0109481 RchiOBHm_Chr2g0168751 RchiOBHm_Chr3g0453071 RchiOBHm_Chr3g0460741 RchiOBHm_Chr3g0467971 RchiOBHm_Chr4g0400901 RchiOBHm_Chr6g0248011 RchiOBHm_Chr7g0232381 RchiOBHm_Chr7g0238121
rosa_laevigata RLG00000001350 RLG00000009167 RLG00000015163 RLG00000017708 RLG00000017741 RLG00000021807 RLG00000023849 RLG00000026518
rosa_multiflora Rmu_sc0000332.1_g000021 Rmu_sc0000332.1_g000029 Rmu_sc0002416.1_g000007 Rmu_sc0002611.1_g000001 Rmu_sc0003113.1_g000016 Rmu_sc0004780.1_g000001 Rmu_sc0004805.1_g000035 Rmu_sc0010633.1_g000010 Rmu_sc0011069.1_g000003 Rmu_sc0016170.1_g000002 Rmu_sc0025757.1_g000003 Rmu_ssc0000484.1_g000003
rosa_roxburghii Rroxscaffold_2G00134200 Rroxscaffold_4G00321030 Rroxscaffold_7G00213500
rosa_rugosa Rorug01G0283100 Rorug02G0160500 Rorug02G0535300 Rorug04G0027000 Rorug04G0328100 Rorug05G0388700 Rorug05G0530200 Rorug06G0489200 Rorug07G0104900 Rorug07G0209400 Rorug07G0274500
rosa_samantha Rh2BG222800 Rh2BG618900 Rh2CG214400 Rh2CG587200 Rh6BG040200 Rh6CG206500 Rh6DG035600 Rh7BG401600 Rh7BG401700 Rh7DG418400
rosa_wichuraiana Rw2G050240 Rw6G003920 Rw7G035430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 93
AciI CCGC 1 cut(s) 27
AclWI GGATC 1 cut(s) 198
AcsI RAATTY 1 cut(s) 156
AcyI GRCGYC 1 cut(s) 36
AflIII ACRYGT 1 cut(s) 91
AgsI TTSAA 1 cut(s) 43
AluBI AGCT 3 cut(s) 9, 128, 149
AluI AGCT 3 cut(s) 9, 128, 149
AlwI GGATC 1 cut(s) 198
Ama87I CYCGRG 1 cut(s) 110
ApoI RAATTY 1 cut(s) 156
AsuHPI GGTGA 1 cut(s) 191
AvaI CYCGRG 1 cut(s) 110
BanII GRGCYC 1 cut(s) 117
BclI TGATCA 1 cut(s) 196
BfaI CTAG 1 cut(s) 208
BisI GCNGC 1 cut(s) 28
BlsI GCNGC 1 cut(s) 29
BmeT110I CYCGRG 1 cut(s) 110
BsaHI GRCGYC 1 cut(s) 36
Bse118I RCCGGY 1 cut(s) 68
BseGI GGATG 1 cut(s) 84
Bsh1236I CGCG 1 cut(s) 93
BsiHKCI CYCGRG 1 cut(s) 110
BsiSI CCGG 1 cut(s) 69
BsoBI CYCGRG 1 cut(s) 110
Bsp1286I GDGCHC 1 cut(s) 117
Bsp143I GATC 3 cut(s) 141, 196, 203
BspACI CCGC 1 cut(s) 27
BspFNI CGCG 1 cut(s) 93
BspPI GGATC 1 cut(s) 198
BsrFI RCCGGY 1 cut(s) 68
BssAI RCCGGY 1 cut(s) 68
BssMI GATC 3 cut(s) 141, 196, 203
BssNI GRCGYC 1 cut(s) 36
Bst4CI ACNGT 2 cut(s) 19, 121
BstACI GRCGYC 1 cut(s) 36
BstC8I GCNNGC 1 cut(s) 80
BstF5I GGATG 1 cut(s) 84
BstFNI CGCG 1 cut(s) 93
BstKTI GATC 3 cut(s) 144, 199, 206
BstMBI GATC 3 cut(s) 141, 196, 203
BstUI CGCG 1 cut(s) 93
BtsCI GGATG 1 cut(s) 84
BtsIMutI CAGTG 1 cut(s) 117
Cac8I GCNNGC 1 cut(s) 80
Cfr10I RCCGGY 1 cut(s) 68
CseI GACGC 2 cut(s) 44, 82
CviAII CATG 1 cut(s) 184
CviJI RGCY 4 cut(s) 9, 115, 128, 149
CviKI_1 RGCY 4 cut(s) 9, 115, 128, 149
DpnI GATC 3 cut(s) 143, 198, 205
DpnII GATC 3 cut(s) 141, 196, 203
Eco24I GRGCYC 1 cut(s) 117
Eco88I CYCGRG 1 cut(s) 110
EcoT38I GRGCYC 1 cut(s) 117
FaeI CATG 1 cut(s) 187
FaiI YATR 2 cut(s) 132, 185
FatI CATG 1 cut(s) 183
FbaI TGATCA 1 cut(s) 196
Fnu4HI GCNGC 1 cut(s) 28
FokI GGATG 1 cut(s) 71
FriOI GRGCYC 1 cut(s) 117
Fsp4HI GCNGC 1 cut(s) 28
FspBI CTAG 1 cut(s) 208
GluI GCNGC 1 cut(s) 28
HapII CCGG 1 cut(s) 69
HgaI GACGC 2 cut(s) 44, 82
Hin1I GRCGYC 1 cut(s) 36
Hin1II CATG 1 cut(s) 187
HindIII AAGCTT 2 cut(s) 126, 147
HpaII CCGG 1 cut(s) 69
HphI GGTGA 1 cut(s) 191
Hpy188I TCNGA 1 cut(s) 154
Hpy99I CGWCG 3 cut(s) 35, 38, 107
HpyAV CCTTC 2 cut(s) 49, 58
HpyCH4III ACNGT 2 cut(s) 19, 121
Hsp92I GRCGYC 1 cut(s) 36
Hsp92II CATG 1 cut(s) 187
Ksp22I TGATCA 1 cut(s) 196
Kzo9I GATC 3 cut(s) 141, 196, 203
LpnPI CCDG 1 cut(s) 82
MaeI CTAG 1 cut(s) 208
MalI GATC 3 cut(s) 143, 198, 205
MboI GATC 3 cut(s) 141, 196, 203
MboII GAAGA 2 cut(s) 43, 91
MhlI GDGCHC 1 cut(s) 117
MluCI AATT 1 cut(s) 156
MluI ACGCGT 1 cut(s) 91
MmeI TCCRAC 1 cut(s) 81
MnlI CCTC 3 cut(s) 119, 183, 199
MspI CCGG 1 cut(s) 69
MvnI CGCG 1 cut(s) 93
NdeII GATC 3 cut(s) 141, 196, 203
NlaIII CATG 1 cut(s) 187
NmeAIII GCCGAG 1 cut(s) 30
PaeR7I CTCGAG 1 cut(s) 110
PcsI WCGNNNNNNNCGW 2 cut(s) 27, 108
PkrI GCNGC 1 cut(s) 29
PspXI VCTCGAGB 1 cut(s) 110
SatI GCNGC 1 cut(s) 28
Sau3AI GATC 3 cut(s) 141, 196, 203
SduI GDGCHC 1 cut(s) 117
SetI ASST 5 cut(s) 11, 50, 130, 151, 191
Sfr274I CTCGAG 1 cut(s) 110
SlaI CTCGAG 1 cut(s) 110
SmlI CTYRAG 1 cut(s) 110
SmoI CTYRAG 1 cut(s) 110
Sse9I AATT 1 cut(s) 156
SsiI CCGC 1 cut(s) 27
SspMI CTAG 1 cut(s) 208
TaaI ACNGT 2 cut(s) 19, 121
TaqI TCGA 2 cut(s) 111, 164
TasI AATT 1 cut(s) 156
TauI GCSGC 1 cut(s) 30
TscAI CASTG 1 cut(s) 124
TspDTI ATGAA 1 cut(s) 147
TspRI CASTG 1 cut(s) 124
XapI RAATTY 1 cut(s) 156
XhoI CTCGAG 1 cut(s) 110
XspI CTAG 1 cut(s) 208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.