Rorug06G0489200

Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000549
Physical Location & Seq
Forward (+)
60722799 .. 60725117
2319 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0489200.1

Sequence Viewer

Length: 795 bp
ATGCTAATTCTGAGCCAAGCTCCCACCGCAGCCTTATCGGCCAGCTGTTCTCGCAAGCCCCCTCTCAAATTCACCAACCCGAACCCGCCGATCTTCTCGACCCGAAAACCCAAATTCCTTTCCAGACCCAAGCCGTCGTCCAAGTCCCTCAACCTCACGCTCGCTAAAGCCGTCGACGGAGGCGTCGATTCCGCCTTCAAGCCGCTCCCCAATCCTCCTCCGTCGCCGTTAGACAATGACCAGCCCGTCTTCGTCGGCGGCGAGAATATGCCCTTGGAAGGCGTCATTCAGTTCGACAAGCCCAGGCCCAGCTCCTCTGCTCGAATCAGAAAATGGGGTAAGGTGGCATTGCTCGCCGGCGGGGATGTTCTGGCTTTGCTGACGTTCGCTGCAATTGGGAGATTCAGTCATGGCTTCCCTGTTTTGGACTTTGAAACCCTCCGCACCGCTGACCCTTTTATTGCCGGTTGGTTTTTGAGTGCTTATTTCCTCGGAGGCTTTGGGGAAGACGGACGTGGAATCAATGGTCTGCCTAAGGCTGTTACTGCTTCTGCTAAGTCATGGGCCCTCGGAATCCCACTTGGGATAGTCATAAGGGCGTCAACAGCAGGTCACATTCCCTCCTTCAGTTTTGTGTTGGTATCAATGGGGAGCACTGCTGTTCTACTTTTGGGATGGAGGACGTTATTGTATAAATTCCTTCCTGGTGATAAGAGCAAAAAGAGTGATGTATATCGCCGCGGTAGCCCGTTTGAGTTGTTTGAGTTGCTCACATCTCTAGTACGAAGATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04145 ko04210 ko04530 ko04540 ko05130 map04145 map04210 map04530 map04540 map05130
Pfam Domains
Protein Families
Tubulin Tubulin_C

Protein Analysis

264

Amino Acids

28.42

Weight (kDa)

10.25

Isoelectric Point (pI)

36.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3054 PF11255 120 - 229 7.3e-30 Protein of unknown function (DUF3054)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000549)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04820 AT1G50010 AT4G14960 AT4G14960
fragaria_vesca FvH4_1g18660 FvH4_2g03140 FvH4_5g33560 FvH4_6g48940 FvH4_6g48940
malus_domestica MD02G1204800.v1.1 MD05G1106800.v1.1 MD08G1210600.v1.1 MD09G1049500.v1.1 MD10G1111600.v1.1 MD15G1398700.v1.1 MD17G1049700.v1.1
prunus_persica Prupe.1G542600_v2.0.a1 Prupe.3G269300_v2.0.a1 Prupe.6G212700_v2.0.a1 Prupe.8G150900_v2.0.a1
pyrus_communis pycom05g10370 pycom08g18150 pycom10g09640 pycom10g09660 pycom111g04050 pycom15g35470 pycom17g04460
rosa_chinensis RchiOBHm_Chr2g0109481 RchiOBHm_Chr2g0168751 RchiOBHm_Chr3g0453071 RchiOBHm_Chr3g0460741 RchiOBHm_Chr3g0467971 RchiOBHm_Chr4g0400901 RchiOBHm_Chr6g0248011 RchiOBHm_Chr7g0232381 RchiOBHm_Chr7g0238121
rosa_laevigata RLG00000001350 RLG00000009167 RLG00000015163 RLG00000017708 RLG00000017741 RLG00000021807 RLG00000023849 RLG00000026518
rosa_multiflora Rmu_sc0000332.1_g000021 Rmu_sc0000332.1_g000029 Rmu_sc0002416.1_g000007 Rmu_sc0002611.1_g000001 Rmu_sc0003113.1_g000016 Rmu_sc0004780.1_g000001 Rmu_sc0004805.1_g000035 Rmu_sc0010633.1_g000010 Rmu_sc0011069.1_g000003 Rmu_sc0016170.1_g000002 Rmu_sc0025757.1_g000003 Rmu_ssc0000484.1_g000003
rosa_roxburghii Rroxscaffold_2G00134200 Rroxscaffold_4G00321030 Rroxscaffold_7G00213500
rosa_rugosa Rorug01G0283100 Rorug02G0160500 Rorug02G0535300 Rorug04G0027000 Rorug04G0328100 Rorug05G0388700 Rorug05G0530200 Rorug06G0489200 Rorug07G0104900 Rorug07G0209400 Rorug07G0274500
rosa_samantha Rh2BG222800 Rh2BG618900 Rh2CG214400 Rh2CG587200 Rh6BG040200 Rh6CG206500 Rh6DG035600 Rh7BG401600 Rh7BG401700 Rh7DG418400
rosa_wichuraiana Rw2G050240 Rw6G003920 Rw7G035430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 182, 245
Acc36I ACCTGC 1 cut(s) 599
AccBSI CCGCTC 1 cut(s) 205
AccI GTMKAC 1 cut(s) 174
AccII CGCG 1 cut(s) 741
AcoI YGGCCR 1 cut(s) 39
AcsI RAATTY 3 cut(s) 68, 113, 695
AcuI CTGAAG 1 cut(s) 610
AcyI GRCGYC 3 cut(s) 183, 282, 599
AfaI GTAC 1 cut(s) 783
AfiI CCNNNNNNNGG 2 cut(s) 278, 424
AgsI TTSAA 2 cut(s) 199, 434
AjiI CACGTC 1 cut(s) 515
AjnI CCWGG 2 cut(s) 302, 703
AjuI GAANNNNNNNTTGG 2 cut(s) 257, 289
AluBI AGCT 3 cut(s) 20, 45, 312
AluI AGCT 3 cut(s) 20, 45, 312
Alw21I GWGCWC 1 cut(s) 656
AoxI GGCC 3 cut(s) 39, 305, 564
ApaI GGGCCC 1 cut(s) 568
ApeKI GCWGC 2 cut(s) 29, 389
ApoI RAATTY 3 cut(s) 68, 113, 695
AspS9I GGNCC 3 cut(s) 306, 564, 565
AsuHPI GGTGA 2 cut(s) 64, 719
AxyI CCTNAGG 1 cut(s) 534
BaeGI GKGCMC 1 cut(s) 568
BanII GRGCYC 1 cut(s) 568
BbsI GAAGAC 2 cut(s) 241, 513
Bbv12I GWGCWC 1 cut(s) 656
BbvI GCAGC 2 cut(s) 41, 376
BccI CCATC 2 cut(s) 669, 783
BceAI ACGGC 3 cut(s) 118, 155, 211
BcgI CGANNNNNNTGC 2 cut(s) 18, 52
BciT130I CCWGG 2 cut(s) 304, 705
BfaI CTAG 1 cut(s) 779
BfuAI ACCTGC 1 cut(s) 599
BglI GCCNNNNNGGC 1 cut(s) 38
BisI GCNGC 5 cut(s) 30, 203, 259, 390, 739
BlsI GCNGC 5 cut(s) 31, 204, 260, 391, 740
Bme1390I CCNGG 2 cut(s) 304, 705
BmgBI CACGTC 1 cut(s) 515
BmgT120I GGNCC 3 cut(s) 306, 564, 565
BmiI GGNNCC 1 cut(s) 566
BmrFI CCNGG 2 cut(s) 304, 705
BpiI GAAGAC 2 cut(s) 241, 513
BplI GAGNNNNNCTC 1 cut(s) 36
BsaBI GATNNNNATC 1 cut(s) 732
BsaHI GRCGYC 3 cut(s) 183, 282, 599
BsaJI CCNNGG 5 cut(s) 273, 302, 490, 568, 739
BsaXI ACNNNNNCTCC 4 cut(s) 391, 421, 605, 635
Bsc4I CCNNNNNNNGG 2 cut(s) 278, 424
Bse118I RCCGGY 2 cut(s) 356, 464
Bse21I CCTNAGG 1 cut(s) 534
Bse3DI GCAATG 1 cut(s) 347
Bse8I GATNNNNATC 1 cut(s) 732
BseBI CCWGG 2 cut(s) 304, 705
BseDI CCNNGG 5 cut(s) 273, 302, 490, 568, 739
BseGI GGATG 2 cut(s) 370, 680
BseJI GATNNNNATC 1 cut(s) 732
BseLI CCNNNNNNNGG 2 cut(s) 278, 424
BseMI GCAATG 1 cut(s) 347
BseRI GAGGAG 2 cut(s) 207, 304
BseSI GKGCMC 1 cut(s) 568
BseXI GCAGC 2 cut(s) 41, 376
BseYI CCCAGC 1 cut(s) 308
Bsh1236I CGCG 1 cut(s) 741
BshFI GGCC 3 cut(s) 41, 307, 566
BsiHKAI GWGCWC 1 cut(s) 656
BsiSI CCGG 2 cut(s) 357, 465
BslFI GGGAC 1 cut(s) 130
BslI CCNNNNNNNGG 2 cut(s) 278, 424
BsmFI GGGAC 1 cut(s) 130
BsnI GGCC 3 cut(s) 41, 307, 566
Bsp120I GGGCCC 1 cut(s) 564
Bsp1286I GDGCHC 2 cut(s) 568, 656
Bsp143I GATC 1 cut(s) 90
BspANI GGCC 3 cut(s) 41, 307, 566
BspFNI CGCG 1 cut(s) 741
BspLI GGNNCC 1 cut(s) 566
BspMI ACCTGC 1 cut(s) 599
BsrBI CCGCTC 1 cut(s) 205
BsrDI GCAATG 1 cut(s) 347
BsrFI RCCGGY 2 cut(s) 356, 464
BssAI RCCGGY 2 cut(s) 356, 464
BssECI CCNNGG 5 cut(s) 273, 302, 490, 568, 739
BssMI GATC 1 cut(s) 90
BssNI GRCGYC 3 cut(s) 183, 282, 599
BssT1I CCWWGG 1 cut(s) 273
Bst2UI CCWGG 2 cut(s) 304, 705
BstACI GRCGYC 3 cut(s) 183, 282, 599
BstC8I GCNNGC 5 cut(s) 43, 56, 162, 354, 358
BstDEI CTNAG 3 cut(s) 11, 534, 555
BstDSI CCRYGG 1 cut(s) 739
BstF5I GGATG 2 cut(s) 370, 680
BstFNI CGCG 1 cut(s) 741
BstKTI GATC 1 cut(s) 93
BstMBI GATC 1 cut(s) 90
BstMWI GCNNNNNNNGC 7 cut(s) 26, 38, 51, 353, 545, 605, 744
BstNI CCWGG 2 cut(s) 304, 705
BstSCI CCNGG 2 cut(s) 302, 703
BstSLI GKGCMC 1 cut(s) 568
BstUI CGCG 1 cut(s) 741
BstV1I GCAGC 2 cut(s) 41, 376
BstV2I GAAGAC 2 cut(s) 241, 513
Bsu36I CCTNAGG 1 cut(s) 534
BsuRI GGCC 3 cut(s) 41, 307, 566
BtgI CCRYGG 1 cut(s) 739
BtrI CACGTC 1 cut(s) 515
BtsCI GGATG 2 cut(s) 370, 680
BtsI GCAGTG 1 cut(s) 654
BtsIMutI CAGTG 1 cut(s) 654
BveI ACCTGC 1 cut(s) 599
Cac8I GCNNGC 5 cut(s) 43, 56, 162, 354, 358
Cfr10I RCCGGY 2 cut(s) 356, 464
Cfr13I GGNCC 3 cut(s) 306, 564, 565
Cfr42I CCGCGG 1 cut(s) 742
CseI GACGC 3 cut(s) 172, 271, 588
Csp6I GTAC 1 cut(s) 782
CviAII CATG 2 cut(s) 410, 561
CviQI GTAC 1 cut(s) 782
DdeI CTNAG 3 cut(s) 11, 534, 555
DpnI GATC 1 cut(s) 92
DpnII GATC 1 cut(s) 90
DrdI GACNNNNNNGTC 2 cut(s) 182, 245
DseDI GACNNNNNNGTC 2 cut(s) 182, 245
EaeI YGGCCR 1 cut(s) 39
EciI GGCGGA 1 cut(s) 181
Eco130I CCWWGG 1 cut(s) 273
Eco24I GRGCYC 1 cut(s) 568
Eco57I CTGAAG 1 cut(s) 610
Eco81I CCTNAGG 1 cut(s) 534
EcoO109I RGGNCCY 1 cut(s) 565
EcoRII CCWGG 2 cut(s) 302, 703
EcoT14I CCWWGG 1 cut(s) 273
EcoT38I GRGCYC 1 cut(s) 568
ErhI CCWWGG 1 cut(s) 273
FaeI CATG 2 cut(s) 413, 564
FaiI YATR 6 cut(s) 269, 411, 562, 593, 693, 733
FaqI GGGAC 1 cut(s) 130
FatI CATG 2 cut(s) 409, 560
FauI CCCGC 2 cut(s) 93, 353
FblI GTMKAC 1 cut(s) 174
Fnu4HI GCNGC 5 cut(s) 30, 203, 259, 390, 739
FokI GGATG 2 cut(s) 377, 687
FriOI GRGCYC 1 cut(s) 568
Fsp4HI GCNGC 5 cut(s) 30, 203, 259, 390, 739
FspBI CTAG 1 cut(s) 779
GluI GCNGC 5 cut(s) 30, 203, 259, 390, 739
GsaI CCCAGC 1 cut(s) 312
HaeIII GGCC 3 cut(s) 41, 307, 566
HapII CCGG 2 cut(s) 357, 465
HgaI GACGC 3 cut(s) 172, 271, 588
Hin1I GRCGYC 3 cut(s) 183, 282, 599
Hin1II CATG 2 cut(s) 413, 564
HincII GTYRAC 2 cut(s) 175, 603
HindII GTYRAC 2 cut(s) 175, 603
HinfI GANTC 5 cut(s) 188, 324, 402, 519, 573
HpaII CCGG 2 cut(s) 357, 465
HphI GGTGA 2 cut(s) 64, 719
Hpy166II GTNNAC 2 cut(s) 175, 603
Hpy188I TCNGA 4 cut(s) 12, 329, 494, 572
Hpy188III TCNNGA 2 cut(s) 97, 123
Hpy8I GTNNAC 2 cut(s) 175, 603
Hpy99I CGWCG 6 cut(s) 139, 176, 179, 188, 226, 257
HpyAV CCTTC 4 cut(s) 205, 272, 634, 710
HpyCH4IV ACGT 3 cut(s) 383, 514, 683
HpyCH4V TGCA 1 cut(s) 392
HpyF10VI GCNNNNNNNGC 7 cut(s) 26, 38, 51, 353, 545, 605, 744
HpyF3I CTNAG 3 cut(s) 11, 534, 555
HpySE526I ACGT 3 cut(s) 383, 514, 683
Hsp92I GRCGYC 3 cut(s) 183, 282, 599
Hsp92II CATG 2 cut(s) 413, 564
KroI GCCGGC 1 cut(s) 356
KroNI GCCGGC 1 cut(s) 358
KspI CCGCGG 1 cut(s) 742
Kzo9I GATC 1 cut(s) 90
LmnI GCTCC 4 cut(s) 25, 210, 317, 651
Lsp1109I GCAGC 2 cut(s) 41, 376
MaeI CTAG 1 cut(s) 779
MaeII ACGT 3 cut(s) 383, 514, 683
MaeIII GTNAC 2 cut(s) 541, 611
MalI GATC 1 cut(s) 92
MbiI CCGCTC 1 cut(s) 205
MboI GATC 1 cut(s) 90
MboII GAAGA 3 cut(s) 85, 241, 518
MfeI CAATTG 1 cut(s) 393
MhlI GDGCHC 2 cut(s) 568, 656
MluCI AATT 5 cut(s) 6, 68, 113, 393, 695
MreI CGCCGGCG 1 cut(s) 356
MroNI GCCGGC 1 cut(s) 356
MspA1I CMGCKG 3 cut(s) 45, 449, 741
MspI CCGG 2 cut(s) 357, 465
MspR9I CCNGG 2 cut(s) 304, 705
MunI CAATTG 1 cut(s) 393
MvaI CCWGG 2 cut(s) 304, 705
MvnI CGCG 1 cut(s) 741
MwoI GCNNNNNNNGC 7 cut(s) 26, 38, 51, 353, 545, 605, 744
NaeI GCCGGC 1 cut(s) 358
NdeII GATC 1 cut(s) 90
NgoMIV GCCGGC 1 cut(s) 356
NlaIII CATG 2 cut(s) 413, 564
NlaIV GGNNCC 1 cut(s) 566
NmuCI GTSAC 1 cut(s) 611
PcsI WCGNNNNNNNCGW 4 cut(s) 168, 180, 183, 258
PdiI GCCGGC 1 cut(s) 358
PfeI GAWTC 5 cut(s) 188, 324, 402, 519, 573
PkrI GCNGC 5 cut(s) 31, 204, 260, 391, 740
Psp6I CCWGG 2 cut(s) 302, 703
PspFI CCCAGC 1 cut(s) 308
PspGI CCWGG 2 cut(s) 302, 703
PspN4I GGNNCC 1 cut(s) 566
PspOMI GGGCCC 1 cut(s) 564
PspPI GGNCC 3 cut(s) 306, 564, 565
PvuII CAGCTG 1 cut(s) 45
RsaI GTAC 1 cut(s) 783
RsaNI GTAC 1 cut(s) 782
SacII CCGCGG 1 cut(s) 742
SalI GTCGAC 1 cut(s) 173
SatI GCNGC 5 cut(s) 30, 203, 259, 390, 739
Sau3AI GATC 1 cut(s) 90
Sau96I GGNCC 3 cut(s) 306, 564, 565
ScrFI CCNGG 2 cut(s) 304, 705
SduI GDGCHC 2 cut(s) 568, 656
SetI ASST 9 cut(s) 22, 47, 156, 314, 345, 386, 517, 613, 686
Sfr303I CCGCGG 1 cut(s) 742
SgrAI CRCCGGYG 1 cut(s) 356
SgrBI CCGCGG 1 cut(s) 742
SgrDI CGTCGACG 1 cut(s) 173
Sse9I AATT 5 cut(s) 6, 68, 113, 393, 695
SspMI CTAG 1 cut(s) 779
StyD4I CCNGG 2 cut(s) 302, 703
StyI CCWWGG 1 cut(s) 273
TaiI ACGT 3 cut(s) 386, 517, 686
TaqI TCGA 5 cut(s) 98, 174, 186, 294, 322
TasI AATT 5 cut(s) 6, 68, 113, 393, 695
TauI GCSGC 3 cut(s) 205, 261, 741
TfiI GAWTC 5 cut(s) 188, 324, 402, 519, 573
TscAI CASTG 1 cut(s) 661
TseFI GTSAC 1 cut(s) 611
TseI GCWGC 2 cut(s) 29, 389
Tsp45I GTSAC 1 cut(s) 611
TspGWI ACGGA 3 cut(s) 192, 210, 525
TspRI CASTG 1 cut(s) 661
XapI RAATTY 3 cut(s) 68, 113, 695
XmiI GTMKAC 1 cut(s) 174
XspI CTAG 1 cut(s) 779
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.