RchiOBHm_Chr4g0400901

structural constituent of cytoskeleton

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Forward (+)
18808765 .. 18808935
171 bp
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UTR
Exon/CDS
Intron
PRQ37289

Sequence Viewer

Length: 171 bp
ATGCCGAGCAACAAGACCATCGGCCACAGCGACGACACCTTCAACACCTTCTTCTCCGAGACCGGCGCGGCAAGCATGTCCCACGCACCATCTTTGTCCACCTCGAGCCCACCGTCATCGAAGAGGTCTGCACCGGAACCTACAGCCAGCTCTTCCACCCTGAGCAGCTAA

Protein Analysis

56

Amino Acids

5.71

Weight (kDa)

5.98

Isoelectric Point (pI)

96.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000549)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04820 AT1G50010 AT4G14960 AT4G14960
fragaria_vesca FvH4_1g18660 FvH4_2g03140 FvH4_5g33560 FvH4_6g48940 FvH4_6g48940
malus_domestica MD02G1204800.v1.1 MD05G1106800.v1.1 MD08G1210600.v1.1 MD09G1049500.v1.1 MD10G1111600.v1.1 MD15G1398700.v1.1 MD17G1049700.v1.1
prunus_persica Prupe.1G542600_v2.0.a1 Prupe.3G269300_v2.0.a1 Prupe.6G212700_v2.0.a1 Prupe.8G150900_v2.0.a1
pyrus_communis pycom05g10370 pycom08g18150 pycom10g09640 pycom10g09660 pycom111g04050 pycom15g35470 pycom17g04460
rosa_chinensis RchiOBHm_Chr2g0109481 RchiOBHm_Chr2g0168751 RchiOBHm_Chr3g0453071 RchiOBHm_Chr3g0460741 RchiOBHm_Chr3g0467971 RchiOBHm_Chr4g0400901 RchiOBHm_Chr6g0248011 RchiOBHm_Chr7g0232381 RchiOBHm_Chr7g0238121
rosa_laevigata RLG00000001350 RLG00000009167 RLG00000015163 RLG00000017708 RLG00000017741 RLG00000021807 RLG00000023849 RLG00000026518
rosa_multiflora Rmu_sc0000332.1_g000021 Rmu_sc0000332.1_g000029 Rmu_sc0002416.1_g000007 Rmu_sc0002611.1_g000001 Rmu_sc0003113.1_g000016 Rmu_sc0004780.1_g000001 Rmu_sc0004805.1_g000035 Rmu_sc0010633.1_g000010 Rmu_sc0011069.1_g000003 Rmu_sc0016170.1_g000002 Rmu_sc0025757.1_g000003 Rmu_ssc0000484.1_g000003
rosa_roxburghii Rroxscaffold_2G00134200 Rroxscaffold_4G00321030 Rroxscaffold_7G00213500
rosa_rugosa Rorug01G0283100 Rorug02G0160500 Rorug02G0535300 Rorug04G0027000 Rorug04G0328100 Rorug05G0388700 Rorug05G0530200 Rorug06G0489200 Rorug07G0104900 Rorug07G0209400 Rorug07G0274500
rosa_samantha Rh2BG222800 Rh2BG618900 Rh2CG214400 Rh2CG587200 Rh6BG040200 Rh6CG206500 Rh6DG035600 Rh7BG401600 Rh7BG401700 Rh7DG418400
rosa_wichuraiana Rw2G050240 Rw6G003920 Rw7G035430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 68
AciI CCGC 1 cut(s) 68
AcoI YGGCCR 1 cut(s) 22
AgsI TTSAA 1 cut(s) 43
AluBI AGCT 2 cut(s) 150, 168
AluI AGCT 2 cut(s) 150, 168
Alw26I GTCTC 1 cut(s) 53
Ama87I CYCGRG 1 cut(s) 103
AoxI GGCC 1 cut(s) 22
ApeKI GCWGC 1 cut(s) 165
AspLEI GCGC 1 cut(s) 68
AvaI CYCGRG 1 cut(s) 103
BanII GRGCYC 1 cut(s) 110
BccI CCATC 2 cut(s) 26, 97
BcoDI GTCTC 1 cut(s) 53
BfmI CTRYAG 1 cut(s) 141
BisI GCNGC 2 cut(s) 69, 166
BlsI GCNGC 2 cut(s) 70, 167
BmeT110I CYCGRG 1 cut(s) 103
BmiI GGNNCC 1 cut(s) 138
Bpu10I CCTNAGC 1 cut(s) 161
BsaI GGTCTC 1 cut(s) 53
BsaWI WCCGGW 1 cut(s) 133
Bse118I RCCGGY 1 cut(s) 62
BseMII CTCAG 1 cut(s) 152
BsgI GTGCAG 1 cut(s) 114
Bsh1236I CGCG 1 cut(s) 68
BshFI GGCC 1 cut(s) 24
BsiHKCI CYCGRG 1 cut(s) 103
BsiSI CCGG 2 cut(s) 63, 134
BslFI GGGAC 1 cut(s) 64
BsmAI GTCTC 1 cut(s) 53
BsmFI GGGAC 1 cut(s) 64
BsnI GGCC 1 cut(s) 24
Bso31I GGTCTC 1 cut(s) 53
BsoBI CYCGRG 1 cut(s) 103
Bsp1286I GDGCHC 1 cut(s) 110
BspACI CCGC 1 cut(s) 68
BspANI GGCC 1 cut(s) 24
BspCNI CTCAG 1 cut(s) 153
BspFNI CGCG 1 cut(s) 68
BspLI GGNNCC 1 cut(s) 138
BspQI GCTCTTC 1 cut(s) 157
BspTNI GGTCTC 1 cut(s) 53
BsrFI RCCGGY 1 cut(s) 62
BssAI RCCGGY 1 cut(s) 62
Bst4CI ACNGT 1 cut(s) 114
Bst6I CTCTTC 2 cut(s) 116, 157
BstC8I GCNNGC 2 cut(s) 73, 148
BstDEI CTNAG 1 cut(s) 161
BstFNI CGCG 1 cut(s) 68
BstHHI GCGC 1 cut(s) 68
BstMAI GTCTC 1 cut(s) 53
BstMWI GCNNNNNNNGC 1 cut(s) 72
BstNSI RCATGY 1 cut(s) 79
BstSFI CTRYAG 1 cut(s) 141
BstUI CGCG 1 cut(s) 68
BsuRI GGCC 1 cut(s) 24
Cac8I GCNNGC 2 cut(s) 73, 148
CfoI GCGC 1 cut(s) 68
Cfr10I RCCGGY 1 cut(s) 62
CviAII CATG 1 cut(s) 76
CviJI RGCY 5 cut(s) 24, 108, 146, 150, 168
CviKI_1 RGCY 5 cut(s) 24, 108, 146, 150, 168
DdeI CTNAG 1 cut(s) 161
EaeI YGGCCR 1 cut(s) 22
Eam1104I CTCTTC 2 cut(s) 116, 157
EarI CTCTTC 2 cut(s) 116, 157
Eco24I GRGCYC 1 cut(s) 110
Eco31I GGTCTC 1 cut(s) 53
Eco88I CYCGRG 1 cut(s) 103
EcoT38I GRGCYC 1 cut(s) 110
FaeI CATG 1 cut(s) 79
FaiI YATR 1 cut(s) 77
FaqI GGGAC 1 cut(s) 64
FatI CATG 1 cut(s) 75
Fnu4HI GCNGC 2 cut(s) 69, 166
FriOI GRGCYC 1 cut(s) 110
Fsp4HI GCNGC 2 cut(s) 69, 166
GlaI GCGC 1 cut(s) 67
GluI GCNGC 2 cut(s) 69, 166
HaeIII GGCC 1 cut(s) 24
HapII CCGG 2 cut(s) 63, 134
HhaI GCGC 1 cut(s) 68
Hin1II CATG 1 cut(s) 79
Hin6I GCGC 1 cut(s) 66
HinP1I GCGC 1 cut(s) 66
HpaII CCGG 2 cut(s) 63, 134
Hpy166II GTNNAC 1 cut(s) 99
Hpy188I TCNGA 1 cut(s) 58
Hpy8I GTNNAC 1 cut(s) 99
Hpy99I CGWCG 1 cut(s) 35
HpyAV CCTTC 2 cut(s) 49, 58
HpyCH4III ACNGT 1 cut(s) 114
HpyCH4V TGCA 1 cut(s) 131
HpyF10VI GCNNNNNNNGC 1 cut(s) 72
HpyF3I CTNAG 1 cut(s) 161
Hsp92II CATG 1 cut(s) 79
HspAI GCGC 1 cut(s) 66
LguI GCTCTTC 1 cut(s) 157
LpnPI CCDG 3 cut(s) 76, 147, 160
MboII GAAGA 3 cut(s) 43, 133, 144
MhlI GDGCHC 1 cut(s) 110
MnlI CCTC 2 cut(s) 112, 117
MspI CCGG 2 cut(s) 63, 134
MvnI CGCG 1 cut(s) 68
MwoI GCNNNNNNNGC 1 cut(s) 72
NlaIII CATG 1 cut(s) 79
NlaIV GGNNCC 1 cut(s) 138
NmeAIII GCCGAG 1 cut(s) 30
NspI RCATGY 1 cut(s) 79
PaeR7I CTCGAG 1 cut(s) 103
PciSI GCTCTTC 1 cut(s) 157
PcsI WCGNNNNNNNCGW 2 cut(s) 27, 110
PkrI GCNGC 2 cut(s) 70, 167
PspN4I GGNNCC 1 cut(s) 138
PspXI VCTCGAGB 1 cut(s) 103
SapI GCTCTTC 1 cut(s) 157
SatI GCNGC 2 cut(s) 69, 166
SduI GDGCHC 1 cut(s) 110
SetI ASST 7 cut(s) 41, 50, 104, 128, 142, 152, 170
SfcI CTRYAG 1 cut(s) 141
Sfr274I CTCGAG 1 cut(s) 103
SlaI CTCGAG 1 cut(s) 103
SmlI CTYRAG 1 cut(s) 103
SmoI CTYRAG 1 cut(s) 103
SsiI CCGC 1 cut(s) 68
TaaI ACNGT 1 cut(s) 114
TaqI TCGA 2 cut(s) 104, 119
TauI GCSGC 1 cut(s) 71
TseI GCWGC 1 cut(s) 165
XceI RCATGY 1 cut(s) 79
XhoI CTCGAG 1 cut(s) 103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.