Rmu_sc0002416.1_g000007

structural constituent of cytoskeleton

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002416.1
OG0000549
Physical Location & Seq
Forward (+)
27404 .. 27661
258 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002416.1_g000007.1.cds

Sequence Viewer

Length: 258 bp
atgctgagagacaataccgtcgacagttgcgacgacgccttcaacaccttcttctccgagaccggggccggcaagcacgtcccatgcgccatcttcgtcaacctcgaggccaccgtcaaagcttctgaacaaatgatcccgaccggagttggcgaagtcgttgaacaaatgatcaaagcttctgagatctgttcaactgttcctcatcaaaccacgacctccagcgttcgtattcacaagcattctctgtcaggatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04145 ko04210 ko04530 ko04540 ko05130 map04145 map04210 map04530 map04540 map05130
Pfam Domains
Protein Families
Tubulin Tubulin_C

Protein Analysis

85

Amino Acids

9.14

Weight (kDa)

5.38

Isoelectric Point (pI)

34.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000549)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04820 AT1G50010 AT4G14960 AT4G14960
fragaria_vesca FvH4_1g18660 FvH4_2g03140 FvH4_5g33560 FvH4_6g48940 FvH4_6g48940
malus_domestica MD02G1204800.v1.1 MD05G1106800.v1.1 MD08G1210600.v1.1 MD09G1049500.v1.1 MD10G1111600.v1.1 MD15G1398700.v1.1 MD17G1049700.v1.1
prunus_persica Prupe.1G542600_v2.0.a1 Prupe.3G269300_v2.0.a1 Prupe.6G212700_v2.0.a1 Prupe.8G150900_v2.0.a1
pyrus_communis pycom05g10370 pycom08g18150 pycom10g09640 pycom10g09660 pycom111g04050 pycom15g35470 pycom17g04460
rosa_chinensis RchiOBHm_Chr2g0109481 RchiOBHm_Chr2g0168751 RchiOBHm_Chr3g0453071 RchiOBHm_Chr3g0460741 RchiOBHm_Chr3g0467971 RchiOBHm_Chr4g0400901 RchiOBHm_Chr6g0248011 RchiOBHm_Chr7g0232381 RchiOBHm_Chr7g0238121
rosa_laevigata RLG00000001350 RLG00000009167 RLG00000015163 RLG00000017708 RLG00000017741 RLG00000021807 RLG00000023849 RLG00000026518
rosa_multiflora Rmu_sc0000332.1_g000021 Rmu_sc0000332.1_g000029 Rmu_sc0002416.1_g000007 Rmu_sc0002611.1_g000001 Rmu_sc0003113.1_g000016 Rmu_sc0004780.1_g000001 Rmu_sc0004805.1_g000035 Rmu_sc0010633.1_g000010 Rmu_sc0011069.1_g000003 Rmu_sc0016170.1_g000002 Rmu_sc0025757.1_g000003 Rmu_ssc0000484.1_g000003
rosa_roxburghii Rroxscaffold_2G00134200 Rroxscaffold_4G00321030 Rroxscaffold_7G00213500
rosa_rugosa Rorug01G0283100 Rorug02G0160500 Rorug02G0535300 Rorug04G0027000 Rorug04G0328100 Rorug05G0388700 Rorug05G0530200 Rorug06G0489200 Rorug07G0104900 Rorug07G0209400 Rorug07G0274500
rosa_samantha Rh2BG222800 Rh2BG618900 Rh2CG214400 Rh2CG587200 Rh6BG040200 Rh6CG206500 Rh6DG035600 Rh7BG401600 Rh7BG401700 Rh7DG418400
rosa_wichuraiana Rw2G050240 Rw6G003920 Rw7G035430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 17
AbsI CCTCGAGG 1 cut(s) 104
AccI GTMKAC 1 cut(s) 21
AclWI GGATC 1 cut(s) 130
AcyI GRCGYC 1 cut(s) 36
AfiI CCNNNNNNNGG 1 cut(s) 63
AgsI TTSAA 3 cut(s) 43, 164, 195
AjiI CACGTC 1 cut(s) 79
AloI GAACNNNNNNTCC 2 cut(s) 120, 152
AluBI AGCT 2 cut(s) 122, 179
AluI AGCT 2 cut(s) 122, 179
Alw26I GTCTC 2 cut(s) 3, 53
AlwI GGATC 1 cut(s) 130
Ama87I CYCGRG 1 cut(s) 104
AoxI GGCC 2 cut(s) 66, 108
AspLEI GCGC 1 cut(s) 89
AspS9I GGNCC 1 cut(s) 66
AsuC2I CCSGG 1 cut(s) 64
AvaI CYCGRG 1 cut(s) 104
BccI CCATC 1 cut(s) 98
BclI TGATCA 1 cut(s) 171
BcnI CCSGG 1 cut(s) 64
BcoDI GTCTC 2 cut(s) 3, 53
BglII AGATCT 1 cut(s) 186
Bme1390I CCNGG 1 cut(s) 64
BmeT110I CYCGRG 1 cut(s) 104
BmgBI CACGTC 1 cut(s) 79
BmgT120I GGNCC 1 cut(s) 66
BmiI GGNNCC 1 cut(s) 67
BmrFI CCNGG 1 cut(s) 64
BpmI CTGGAG 1 cut(s) 205
BpuMI CCSGG 1 cut(s) 64
BsaHI GRCGYC 1 cut(s) 36
BsaI GGTCTC 1 cut(s) 53
BsaJI CCNNGG 1 cut(s) 63
BsaWI WCCGGW 1 cut(s) 143
Bsc4I CCNNNNNNNGG 1 cut(s) 63
Bse118I RCCGGY 1 cut(s) 68
BseDI CCNNGG 1 cut(s) 63
BseLI CCNNNNNNNGG 1 cut(s) 63
BseMII CTCAG 1 cut(s) 174
Bsh1285I CGRYCG 1 cut(s) 144
BshFI GGCC 2 cut(s) 68, 110
BsiEI CGRYCG 1 cut(s) 144
BsiHKCI CYCGRG 1 cut(s) 104
BsiSI CCGG 3 cut(s) 63, 69, 144
BslFI GGGAC 1 cut(s) 65
BslI CCNNNNNNNGG 1 cut(s) 63
BsmAI GTCTC 2 cut(s) 3, 53
BsmFI GGGAC 1 cut(s) 65
BsmI GAATGC 1 cut(s) 241
BsnI GGCC 2 cut(s) 68, 110
Bso31I GGTCTC 1 cut(s) 53
BsoBI CYCGRG 1 cut(s) 104
Bsp143I GATC 3 cut(s) 135, 171, 186
BspANI GGCC 2 cut(s) 68, 110
BspCNI CTCAG 1 cut(s) 175
BspLI GGNNCC 1 cut(s) 67
BspPI GGATC 1 cut(s) 130
BspTNI GGTCTC 1 cut(s) 53
BsrFI RCCGGY 1 cut(s) 68
BssAI RCCGGY 1 cut(s) 68
BssECI CCNNGG 1 cut(s) 63
BssMI GATC 3 cut(s) 135, 171, 186
BssNI GRCGYC 1 cut(s) 36
Bst4CI ACNGT 4 cut(s) 19, 26, 115, 199
BstACI GRCGYC 1 cut(s) 36
BstC8I GCNNGC 2 cut(s) 70, 74
BstDEI CTNAG 2 cut(s) 5, 183
BstHHI GCGC 1 cut(s) 89
BstKTI GATC 3 cut(s) 138, 174, 189
BstMAI GTCTC 2 cut(s) 3, 53
BstMBI GATC 3 cut(s) 135, 171, 186
BstMCI CGRYCG 1 cut(s) 144
BstSCI CCNGG 1 cut(s) 62
BstX2I RGATCY 1 cut(s) 186
BstYI RGATCY 1 cut(s) 186
BsuRI GGCC 2 cut(s) 68, 110
BtrI CACGTC 1 cut(s) 79
Cac8I GCNNGC 2 cut(s) 70, 74
CfoI GCGC 1 cut(s) 89
Cfr10I RCCGGY 1 cut(s) 68
Cfr13I GGNCC 1 cut(s) 66
CseI GACGC 1 cut(s) 44
CviAII CATG 1 cut(s) 84
CviJI RGCY 4 cut(s) 68, 110, 122, 179
CviKI_1 RGCY 4 cut(s) 68, 110, 122, 179
DdeI CTNAG 2 cut(s) 5, 183
DpnI GATC 3 cut(s) 137, 173, 188
DpnII GATC 3 cut(s) 135, 171, 186
DrdI GACNNNNNNGTC 1 cut(s) 17
DseDI GACNNNNNNGTC 1 cut(s) 17
Eco31I GGTCTC 1 cut(s) 53
Eco88I CYCGRG 1 cut(s) 104
FaeI CATG 1 cut(s) 87
FaiI YATR 1 cut(s) 85
FaqI GGGAC 1 cut(s) 65
FatI CATG 1 cut(s) 83
FbaI TGATCA 1 cut(s) 171
FblI GTMKAC 1 cut(s) 21
GlaI GCGC 1 cut(s) 88
GsuI CTGGAG 1 cut(s) 205
HaeIII GGCC 2 cut(s) 68, 110
HapII CCGG 3 cut(s) 63, 69, 144
HgaI GACGC 1 cut(s) 44
HhaI GCGC 1 cut(s) 89
Hin1I GRCGYC 1 cut(s) 36
Hin1II CATG 1 cut(s) 87
Hin6I GCGC 1 cut(s) 87
HinP1I GCGC 1 cut(s) 87
HincII GTYRAC 2 cut(s) 22, 100
HindII GTYRAC 2 cut(s) 22, 100
HindIII AAGCTT 2 cut(s) 120, 177
HpaII CCGG 3 cut(s) 63, 69, 144
Hpy166II GTNNAC 2 cut(s) 22, 100
Hpy188I TCNGA 3 cut(s) 58, 127, 184
Hpy188III TCNNGA 2 cut(s) 139, 252
Hpy8I GTNNAC 2 cut(s) 22, 100
Hpy99I CGWCG 3 cut(s) 23, 35, 38
HpyAV CCTTC 2 cut(s) 49, 58
HpyCH4III ACNGT 4 cut(s) 19, 26, 115, 199
HpyCH4IV ACGT 1 cut(s) 78
HpyF3I CTNAG 2 cut(s) 5, 183
HpySE526I ACGT 1 cut(s) 78
Hsp92I GRCGYC 1 cut(s) 36
Hsp92II CATG 1 cut(s) 87
HspAI GCGC 1 cut(s) 87
KroI GCCGGC 1 cut(s) 68
KroNI GCCGGC 1 cut(s) 70
Ksp22I TGATCA 1 cut(s) 171
Kzo9I GATC 3 cut(s) 135, 171, 186
LpnPI CCDG 5 cut(s) 76, 82, 157, 235, 237
MaeII ACGT 1 cut(s) 78
MalI GATC 3 cut(s) 137, 173, 188
MboI GATC 3 cut(s) 135, 171, 186
MboII GAAGA 2 cut(s) 43, 85
MflI RGATCY 1 cut(s) 186
MnlI CCTC 4 cut(s) 100, 113, 213, 229
MroNI GCCGGC 1 cut(s) 68
MspI CCGG 3 cut(s) 63, 69, 144
MspR9I CCNGG 1 cut(s) 64
Mva1269I GAATGC 1 cut(s) 241
NaeI GCCGGC 1 cut(s) 70
NciI CCSGG 1 cut(s) 64
NdeII GATC 3 cut(s) 135, 171, 186
NgoMIV GCCGGC 1 cut(s) 68
NlaIII CATG 1 cut(s) 87
NlaIV GGNNCC 1 cut(s) 67
PaeR7I CTCGAG 1 cut(s) 104
PcsI WCGNNNNNNNCGW 3 cut(s) 27, 102, 111
PctI GAATGC 1 cut(s) 241
PdiI GCCGGC 1 cut(s) 70
PspN4I GGNNCC 1 cut(s) 67
PspPI GGNCC 1 cut(s) 66
PspXI VCTCGAGB 1 cut(s) 104
PsuI RGATCY 1 cut(s) 186
SalI GTCGAC 1 cut(s) 20
Sau3AI GATC 3 cut(s) 135, 171, 186
Sau96I GGNCC 1 cut(s) 66
ScrFI CCNGG 1 cut(s) 64
SetI ASST 6 cut(s) 50, 81, 105, 124, 181, 221
Sfr274I CTCGAG 1 cut(s) 104
SlaI CTCGAG 1 cut(s) 104
SmlI CTYRAG 1 cut(s) 104
SmoI CTYRAG 1 cut(s) 104
StyD4I CCNGG 1 cut(s) 62
TaaI ACNGT 4 cut(s) 19, 26, 115, 199
TaiI ACGT 1 cut(s) 81
TaqI TCGA 2 cut(s) 21, 105
XhoI CTCGAG 1 cut(s) 104
XmiI GTMKAC 1 cut(s) 21
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.