Rmu_sc0016170.1_g000002

Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0016170.1
Physical Location & Seq
Reverse (-)
10857 .. 12551
1695 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0016170.1_g000002.1.cds

Sequence Viewer

Length: 819 bp
atgacggcactgctcttaccggaaagagaccaggcctcgatcttgagcttcttcttgccggtggactcgtcgactactagtttacagtcgaccttgatggtgcgtgaagtttcgggtaagctcgccacccagaccttcgaccttgatcactttggccttcatcttcatggtgacgctgtctggaatgcccgtggtctccgtacatcaagagcagcgccgccgtcaacacttgatgcagctgtgaggatggacgtccacacttttgctgcactgcggacgtcctcttctgatttggacggccagatgccgagcgacaagaccgttggctgcggcgacgacaccttcaacaccttcttctccgagaccggcaccagcaagcacgtcccacgcgccatcttcttctacctcgagcccaccgtcatcgacgaggtccgcaccggaacctactgtcagctcttccacccagagcaactcatctcctgcaaggaggacaccgctaacaacttcgcctgtggtcactacaccatcggcaaagagatcgtcaatctctgcctggatcaaattcagaagctcgctgagaactgcaccgggctccagggatccttggtcttcaatgccatctgtggcggtacagggtcgggtcttgggtcgcttctactggagaggctttttgtggactatgggaaaaagtccaagctcggattcactgtgtatccttctcctcaggtttctacgtctattgtggagccctataacagtgtgtcctccactcattctctacttgagcacaccgatgtgtctgtgttgctcaattactga

Protein Analysis

272

Amino Acids

29.61

Weight (kDa)

5.28

Isoelectric Point (pI)

34.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000549)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04820 AT1G50010 AT4G14960 AT4G14960
fragaria_vesca FvH4_1g18660 FvH4_2g03140 FvH4_5g33560 FvH4_6g48940 FvH4_6g48940
malus_domestica MD02G1204800.v1.1 MD05G1106800.v1.1 MD08G1210600.v1.1 MD09G1049500.v1.1 MD10G1111600.v1.1 MD15G1398700.v1.1 MD17G1049700.v1.1
prunus_persica Prupe.1G542600_v2.0.a1 Prupe.3G269300_v2.0.a1 Prupe.6G212700_v2.0.a1 Prupe.8G150900_v2.0.a1
pyrus_communis pycom05g10370 pycom08g18150 pycom10g09640 pycom10g09660 pycom111g04050 pycom15g35470 pycom17g04460
rosa_chinensis RchiOBHm_Chr2g0109481 RchiOBHm_Chr2g0168751 RchiOBHm_Chr3g0453071 RchiOBHm_Chr3g0460741 RchiOBHm_Chr3g0467971 RchiOBHm_Chr4g0400901 RchiOBHm_Chr6g0248011 RchiOBHm_Chr7g0232381 RchiOBHm_Chr7g0238121
rosa_laevigata RLG00000001350 RLG00000009167 RLG00000015163 RLG00000017708 RLG00000017741 RLG00000021807 RLG00000023849 RLG00000026518
rosa_multiflora Rmu_sc0000332.1_g000021 Rmu_sc0000332.1_g000029 Rmu_sc0002416.1_g000007 Rmu_sc0002611.1_g000001 Rmu_sc0003113.1_g000016 Rmu_sc0004780.1_g000001 Rmu_sc0004805.1_g000035 Rmu_sc0010633.1_g000010 Rmu_sc0011069.1_g000003 Rmu_sc0016170.1_g000002 Rmu_sc0025757.1_g000003 Rmu_ssc0000484.1_g000003
rosa_roxburghii Rroxscaffold_2G00134200 Rroxscaffold_4G00321030 Rroxscaffold_7G00213500
rosa_rugosa Rorug01G0283100 Rorug02G0160500 Rorug02G0535300 Rorug04G0027000 Rorug04G0328100 Rorug05G0388700 Rorug05G0530200 Rorug06G0489200 Rorug07G0104900 Rorug07G0209400 Rorug07G0274500
rosa_samantha Rh2BG222800 Rh2BG618900 Rh2CG214400 Rh2CG587200 Rh6BG040200 Rh6CG206500 Rh6DG035600 Rh7BG401600 Rh7BG401700 Rh7DG418400
rosa_wichuraiana Rw2G050240 Rw6G003920 Rw7G035430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 255, 281
AccB1I GGYRCC 1 cut(s) 368
AccI GTMKAC 2 cut(s) 71, 89
AccII CGCG 1 cut(s) 390
AciI CCGC 6 cut(s) 218, 274, 330, 433, 495, 627
AclWI GGATC 3 cut(s) 564, 594, 607
AcoI YGGCCR 1 cut(s) 298
AcsI RAATTY 1 cut(s) 561
AcyI GRCGYC 2 cut(s) 252, 278
AfaI GTAC 2 cut(s) 202, 631
AgsI TTSAA 2 cut(s) 346, 613
AhlI ACTAGT 1 cut(s) 77
AjiI CACGTC 1 cut(s) 382
AjnI CCWGG 3 cut(s) 30, 552, 594
AjuI GAANNNNNNNTTGG 2 cut(s) 686, 718
AleI CACNNNNGTG 1 cut(s) 794
AluBI AGCT 6 cut(s) 48, 121, 239, 454, 571, 697
AluI AGCT 6 cut(s) 48, 121, 239, 454, 571, 697
Alw21I GWGCWC 1 cut(s) 789
Alw26I GTCTC 3 cut(s) 21, 200, 356
AlwI GGATC 3 cut(s) 564, 594, 607
Ama87I CYCGRG 1 cut(s) 407
AoxI GGCC 3 cut(s) 33, 154, 298
ApeKI GCWGC 4 cut(s) 212, 236, 266, 327
ApoI RAATTY 1 cut(s) 561
ArsI GACNNNNNNTTYG 2 cut(s) 525, 557
AspLEI GCGC 2 cut(s) 217, 392
AspS9I GGNCC 1 cut(s) 430
AsuC2I CCSGG 1 cut(s) 589
AsuHPI GGTGA 1 cut(s) 182
AvaI CYCGRG 1 cut(s) 407
AvaII GGWCC 1 cut(s) 430
AxyI CCTNAGG 1 cut(s) 723
BamHI GGATCC 1 cut(s) 599
BanI GGYRCC 1 cut(s) 368
BanII GRGCYC 3 cut(s) 414, 594, 750
BbsI GAAGAC 1 cut(s) 601
Bbv12I GWGCWC 1 cut(s) 789
BbvI GCAGC 4 cut(s) 224, 248, 253, 314
BccI CCATC 5 cut(s) 91, 241, 401, 533, 626
BceAI ACGGC 3 cut(s) 21, 205, 313
BcgI CGANNNNNNTGC 2 cut(s) 520, 554
BciT130I CCWGG 3 cut(s) 32, 554, 596
BciVI GTATCC 1 cut(s) 723
BclI TGATCA 1 cut(s) 145
BcnI CCSGG 1 cut(s) 589
BcoDI GTCTC 3 cut(s) 21, 200, 356
BcuI ACTAGT 1 cut(s) 77
BfaI CTAG 1 cut(s) 78
BfoI RGCGCY 1 cut(s) 218
BfuI GTATCC 1 cut(s) 723
BisI GCNGC 6 cut(s) 213, 218, 237, 267, 328, 331
BlsI GCNGC 6 cut(s) 214, 219, 238, 268, 329, 332
Bme1390I CCNGG 4 cut(s) 32, 554, 589, 596
Bme18I GGWCC 1 cut(s) 430
BmeT110I CYCGRG 1 cut(s) 407
BmgBI CACGTC 1 cut(s) 382
BmgT120I GGNCC 1 cut(s) 430
BmiI GGNNCC 5 cut(s) 370, 442, 593, 601, 747
BmrFI CCNGG 4 cut(s) 32, 554, 589, 596
BmsI GCATC 2 cut(s) 223, 294
BpiI GAAGAC 1 cut(s) 601
BpmI CTGGAG 2 cut(s) 578, 680
BpuEI CTTGAG 2 cut(s) 64, 803
BpuMI CCSGG 1 cut(s) 589
BsaHI GRCGYC 2 cut(s) 252, 278
BsaI GGTCTC 3 cut(s) 21, 200, 356
BsaJI CCNNGG 3 cut(s) 190, 595, 603
BsaWI WCCGGW 2 cut(s) 19, 437
Bse118I RCCGGY 2 cut(s) 58, 365
Bse1I ACTGG 1 cut(s) 663
Bse21I CCTNAGG 1 cut(s) 723
BseBI CCWGG 3 cut(s) 32, 554, 596
BseDI CCNNGG 3 cut(s) 190, 595, 603
BseGI GGATG 1 cut(s) 252
BseMII CTCAG 2 cut(s) 567, 737
BseNI ACTGG 1 cut(s) 663
BseRI GAGGAG 1 cut(s) 711
BseXI GCAGC 4 cut(s) 224, 248, 253, 314
BsgI GTGCAG 2 cut(s) 252, 568
Bsh1236I CGCG 1 cut(s) 390
BshFI GGCC 3 cut(s) 35, 156, 300
BshNI GGYRCC 1 cut(s) 368
BsiHKAI GWGCWC 1 cut(s) 789
BsiHKCI CYCGRG 1 cut(s) 407
BsiSI CCGG 5 cut(s) 20, 59, 366, 438, 588
BslFI GGGAC 1 cut(s) 368
BsmAI GTCTC 3 cut(s) 21, 200, 356
BsmFI GGGAC 1 cut(s) 368
BsmI GAATGC 1 cut(s) 190
BsnI GGCC 3 cut(s) 35, 156, 300
Bso31I GGTCTC 3 cut(s) 21, 200, 356
BsoBI CYCGRG 1 cut(s) 407
Bsp1286I GDGCHC 4 cut(s) 414, 594, 750, 789
Bsp143I GATC 5 cut(s) 39, 145, 537, 556, 599
BspACI CCGC 6 cut(s) 218, 274, 330, 433, 495, 627
BspANI GGCC 3 cut(s) 35, 156, 300
BspCNI CTCAG 2 cut(s) 568, 736
BspFNI CGCG 1 cut(s) 390
BspLI GGNNCC 5 cut(s) 370, 442, 593, 601, 747
BspPI GGATC 3 cut(s) 564, 594, 607
BspQI GCTCTTC 1 cut(s) 461
BspT107I GGYRCC 1 cut(s) 368
BspTNI GGTCTC 3 cut(s) 21, 200, 356
BsrFI RCCGGY 2 cut(s) 58, 365
BsrI ACTGG 1 cut(s) 663
BssAI RCCGGY 2 cut(s) 58, 365
BssECI CCNNGG 3 cut(s) 190, 595, 603
BssMI GATC 5 cut(s) 39, 145, 537, 556, 599
BssNI GRCGYC 2 cut(s) 252, 278
BssT1I CCWWGG 1 cut(s) 603
Bst2UI CCWGG 3 cut(s) 32, 554, 596
Bst4CI ACNGT 6 cut(s) 87, 322, 418, 449, 709, 758
Bst6I CTCTTC 2 cut(s) 289, 461
BstACI GRCGYC 2 cut(s) 252, 278
BstC8I GCNNGC 3 cut(s) 123, 377, 573
BstDEI CTNAG 2 cut(s) 576, 723
BstDSI CCRYGG 1 cut(s) 190
BstF5I GGATG 1 cut(s) 252
BstFNI CGCG 1 cut(s) 390
BstH2I RGCGCY 1 cut(s) 218
BstHHI GCGC 2 cut(s) 217, 392
BstKTI GATC 5 cut(s) 42, 148, 540, 559, 602
BstMAI GTCTC 3 cut(s) 21, 200, 356
BstMBI GATC 5 cut(s) 39, 145, 537, 556, 599
BstNI CCWGG 3 cut(s) 32, 554, 596
BstSCI CCNGG 4 cut(s) 30, 552, 587, 594
BstUI CGCG 1 cut(s) 390
BstV1I GCAGC 4 cut(s) 224, 248, 253, 314
BstV2I GAAGAC 1 cut(s) 601
BstX2I RGATCY 1 cut(s) 599
BstYI RGATCY 1 cut(s) 599
Bsu36I CCTNAGG 1 cut(s) 723
BsuI GTATCC 1 cut(s) 723
BsuRI GGCC 3 cut(s) 35, 156, 300
BtgI CCRYGG 1 cut(s) 190
BtrI CACGTC 1 cut(s) 382
BtsCI GGATG 1 cut(s) 252
BtsI GCAGTG 2 cut(s) 8, 269
BtsIMutI CAGTG 4 cut(s) 8, 269, 705, 763
Cac8I GCNNGC 3 cut(s) 123, 377, 573
CfoI GCGC 2 cut(s) 217, 392
Cfr10I RCCGGY 2 cut(s) 58, 365
Cfr13I GGNCC 1 cut(s) 430
CseI GACGC 1 cut(s) 182
Csp6I GTAC 2 cut(s) 201, 630
CviAII CATG 1 cut(s) 167
CviQI GTAC 2 cut(s) 201, 630
DdeI CTNAG 2 cut(s) 576, 723
DpnI GATC 5 cut(s) 41, 147, 539, 558, 601
DpnII GATC 5 cut(s) 39, 145, 537, 556, 599
EaeI YGGCCR 1 cut(s) 298
Eam1104I CTCTTC 2 cut(s) 289, 461
EarI CTCTTC 2 cut(s) 289, 461
Eco130I CCWWGG 1 cut(s) 603
Eco147I AGGCCT 1 cut(s) 35
Eco24I GRGCYC 3 cut(s) 414, 594, 750
Eco31I GGTCTC 3 cut(s) 21, 200, 356
Eco47I GGWCC 1 cut(s) 430
Eco81I CCTNAGG 1 cut(s) 723
Eco88I CYCGRG 1 cut(s) 407
EcoRII CCWGG 3 cut(s) 30, 552, 594
EcoT14I CCWWGG 1 cut(s) 603
EcoT38I GRGCYC 3 cut(s) 414, 594, 750
ErhI CCWWGG 1 cut(s) 603
FaeI CATG 1 cut(s) 170
FaiI YATR 3 cut(s) 168, 681, 753
FaqI GGGAC 1 cut(s) 368
FatI CATG 1 cut(s) 166
FbaI TGATCA 1 cut(s) 145
FblI GTMKAC 2 cut(s) 71, 89
Fnu4HI GCNGC 6 cut(s) 213, 218, 237, 267, 328, 331
FokI GGATG 1 cut(s) 259
FriOI GRGCYC 3 cut(s) 414, 594, 750
Fsp4HI GCNGC 6 cut(s) 213, 218, 237, 267, 328, 331
FspBI CTAG 1 cut(s) 78
GlaI GCGC 2 cut(s) 216, 391
GluI GCNGC 6 cut(s) 213, 218, 237, 267, 328, 331
GsuI CTGGAG 2 cut(s) 578, 680
HaeII RGCGCY 1 cut(s) 218
HaeIII GGCC 3 cut(s) 35, 156, 300
HapII CCGG 5 cut(s) 20, 59, 366, 438, 588
HgaI GACGC 1 cut(s) 182
HhaI GCGC 2 cut(s) 217, 392
Hin1I GRCGYC 2 cut(s) 252, 278
Hin1II CATG 1 cut(s) 170
Hin6I GCGC 2 cut(s) 215, 390
HinP1I GCGC 2 cut(s) 215, 390
HincII GTYRAC 3 cut(s) 72, 90, 225
HindII GTYRAC 3 cut(s) 72, 90, 225
HinfI GANTC 2 cut(s) 65, 702
HpaII CCGG 5 cut(s) 20, 59, 366, 438, 588
HphI GGTGA 1 cut(s) 182
Hpy166II GTNNAC 7 cut(s) 64, 72, 83, 90, 225, 256, 676
Hpy188I TCNGA 4 cut(s) 289, 361, 567, 701
Hpy188III TCNNGA 3 cut(s) 43, 181, 207
Hpy8I GTNNAC 7 cut(s) 64, 72, 83, 90, 225, 256, 676
Hpy99I CGWCG 3 cut(s) 73, 338, 428
HpyAV CCTTC 5 cut(s) 145, 167, 352, 361, 726
HpyCH4III ACNGT 6 cut(s) 87, 322, 418, 449, 709, 758
HpyCH4IV ACGT 4 cut(s) 252, 278, 381, 734
HpyCH4V TGCA 4 cut(s) 236, 269, 483, 585
HpyF3I CTNAG 2 cut(s) 576, 723
HpySE526I ACGT 4 cut(s) 252, 278, 381, 734
Hsp92I GRCGYC 2 cut(s) 252, 278
Hsp92II CATG 1 cut(s) 170
HspAI GCGC 2 cut(s) 215, 390
Ksp22I TGATCA 1 cut(s) 145
Kzo9I GATC 5 cut(s) 39, 145, 537, 556, 599
LguI GCTCTTC 1 cut(s) 461
LmnI GCTCC 2 cut(s) 597, 745
Lsp1109I GCAGC 4 cut(s) 224, 248, 253, 314
LweI GCATC 2 cut(s) 223, 294
MaeI CTAG 1 cut(s) 78
MaeII ACGT 4 cut(s) 252, 278, 381, 734
MaeIII GTNAC 2 cut(s) 170, 515
MalI GATC 5 cut(s) 41, 147, 539, 558, 601
MboI GATC 5 cut(s) 39, 145, 537, 556, 599
MboII GAAGA 8 cut(s) 43, 155, 276, 346, 388, 391, 448, 601
MflI RGATCY 1 cut(s) 599
MhlI GDGCHC 4 cut(s) 414, 594, 750, 789
MluCI AATT 2 cut(s) 561, 811
MlyI GAGTC 1 cut(s) 59
MnlI CCTC 9 cut(s) 46, 237, 292, 416, 421, 481, 657, 732, 775
MslI CAYNNNNRTG 3 cut(s) 165, 792, 794
MspA1I CMGCKG 1 cut(s) 239
MspI CCGG 5 cut(s) 20, 59, 366, 438, 588
MspR9I CCNGG 4 cut(s) 32, 554, 589, 596
Mva1269I GAATGC 1 cut(s) 190
MvaI CCWGG 3 cut(s) 32, 554, 596
MvnI CGCG 1 cut(s) 390
NciI CCSGG 1 cut(s) 589
NdeII GATC 5 cut(s) 39, 145, 537, 556, 599
NlaIII CATG 1 cut(s) 170
NlaIV GGNNCC 5 cut(s) 370, 442, 593, 601, 747
NmeAIII GCCGAG 1 cut(s) 333
NmuCI GTSAC 2 cut(s) 170, 515
OliI CACNNNNGTG 1 cut(s) 794
PaeR7I CTCGAG 1 cut(s) 407
PceI AGGCCT 1 cut(s) 35
PciSI GCTCTTC 1 cut(s) 461
PcsI WCGNNNNNNNCGW 1 cut(s) 414
PctI GAATGC 1 cut(s) 190
PfeI GAWTC 1 cut(s) 702
PflFI GACNNNGTC 2 cut(s) 176, 428
PkrI GCNGC 6 cut(s) 214, 219, 238, 268, 329, 332
PleI GAGTC 1 cut(s) 59
PpsI GAGTC 1 cut(s) 59
Psp6I CCWGG 3 cut(s) 30, 552, 594
PspGI CCWGG 3 cut(s) 30, 552, 594
PspN4I GGNNCC 5 cut(s) 370, 442, 593, 601, 747
PspPI GGNCC 1 cut(s) 430
PspXI VCTCGAGB 1 cut(s) 407
PsuI RGATCY 1 cut(s) 599
PsyI GACNNNGTC 2 cut(s) 176, 428
PvuII CAGCTG 1 cut(s) 239
RsaI GTAC 2 cut(s) 202, 631
RsaNI GTAC 2 cut(s) 201, 630
RseI CAYNNNNRTG 3 cut(s) 165, 792, 794
SalI GTCGAC 2 cut(s) 70, 88
SapI GCTCTTC 1 cut(s) 461
SatI GCNGC 6 cut(s) 213, 218, 237, 267, 328, 331
Sau3AI GATC 5 cut(s) 39, 145, 537, 556, 599
Sau96I GGNCC 1 cut(s) 430
SchI GAGTC 1 cut(s) 59
ScrFI CCNGG 4 cut(s) 32, 554, 589, 596
SduI GDGCHC 4 cut(s) 414, 594, 750, 789
SfaNI GCATC 2 cut(s) 223, 294
Sfr274I CTCGAG 1 cut(s) 407
SinI GGWCC 1 cut(s) 430
SlaI CTCGAG 1 cut(s) 407
SmiMI CAYNNNNRTG 3 cut(s) 165, 792, 794
SmlI CTYRAG 3 cut(s) 43, 407, 782
SmoI CTYRAG 3 cut(s) 43, 407, 782
SpeI ACTAGT 1 cut(s) 77
Sse9I AATT 2 cut(s) 561, 811
SseBI AGGCCT 1 cut(s) 35
SsiI CCGC 6 cut(s) 218, 274, 330, 433, 495, 627
SspMI CTAG 1 cut(s) 78
StuI AGGCCT 1 cut(s) 35
StyD4I CCNGG 4 cut(s) 30, 552, 587, 594
StyI CCWWGG 1 cut(s) 603
TaaI ACNGT 6 cut(s) 87, 322, 418, 449, 709, 758
TaiI ACGT 4 cut(s) 255, 281, 384, 737
TaqI TCGA 6 cut(s) 38, 71, 89, 138, 408, 423
TasI AATT 2 cut(s) 561, 811
TauI GCSGC 2 cut(s) 220, 333
TfiI GAWTC 1 cut(s) 702
TscAI CASTG 4 cut(s) 15, 276, 712, 763
TseFI GTSAC 2 cut(s) 170, 515
TseI GCWGC 4 cut(s) 212, 236, 266, 327
Tsp45I GTSAC 2 cut(s) 170, 515
TspDTI ATGAA 2 cut(s) 149, 155
TspGWI ACGGA 1 cut(s) 188
TspRI CASTG 4 cut(s) 15, 276, 712, 763
Tth111I GACNNNGTC 2 cut(s) 176, 428
VpaK11BI GGWCC 1 cut(s) 430
XapI RAATTY 1 cut(s) 561
XhoI CTCGAG 1 cut(s) 407
XmiI GTMKAC 2 cut(s) 71, 89
XspI CTAG 1 cut(s) 78
ZraI GACGTC 2 cut(s) 253, 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.