Rmu_sc0000332.1_g000021

Tubulin/FtsZ family, C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000332.1
OG0000549
Physical Location & Seq
Reverse (-)
76378 .. 76686
309 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000332.1_g000021.1.cds

Sequence Viewer

Length: 309 bp
atgcagagcgacaacgccttcaatatcttcttttccaagactggcgccggcaagcatgtcccacgcgccatcttcatcgacttcgagcccactgtcaaagcttctgaacaaacgatcccagccgaagttggcaaagtcgttgaacaaatgatcaaagcttttgagatttgttcgattgttcctcatcaaaccatgacctccagtgttcttcgacctagaccgcgacgagccagacctgcatctcgtctccgatttgtacagaccaccggtgttttcgtccccagaagcgcgggggggctggaagactga

Protein Analysis

102

Amino Acids

11.29

Weight (kDa)

10.15

Isoelectric Point (pI)

50.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000549)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04820 AT1G50010 AT4G14960 AT4G14960
fragaria_vesca FvH4_1g18660 FvH4_2g03140 FvH4_5g33560 FvH4_6g48940 FvH4_6g48940
malus_domestica MD02G1204800.v1.1 MD05G1106800.v1.1 MD08G1210600.v1.1 MD09G1049500.v1.1 MD10G1111600.v1.1 MD15G1398700.v1.1 MD17G1049700.v1.1
prunus_persica Prupe.1G542600_v2.0.a1 Prupe.3G269300_v2.0.a1 Prupe.6G212700_v2.0.a1 Prupe.8G150900_v2.0.a1
pyrus_communis pycom05g10370 pycom08g18150 pycom10g09640 pycom10g09660 pycom111g04050 pycom15g35470 pycom17g04460
rosa_chinensis RchiOBHm_Chr2g0109481 RchiOBHm_Chr2g0168751 RchiOBHm_Chr3g0453071 RchiOBHm_Chr3g0460741 RchiOBHm_Chr3g0467971 RchiOBHm_Chr4g0400901 RchiOBHm_Chr6g0248011 RchiOBHm_Chr7g0232381 RchiOBHm_Chr7g0238121
rosa_laevigata RLG00000001350 RLG00000009167 RLG00000015163 RLG00000017708 RLG00000017741 RLG00000021807 RLG00000023849 RLG00000026518
rosa_multiflora Rmu_sc0000332.1_g000021 Rmu_sc0000332.1_g000029 Rmu_sc0002416.1_g000007 Rmu_sc0002611.1_g000001 Rmu_sc0003113.1_g000016 Rmu_sc0004780.1_g000001 Rmu_sc0004805.1_g000035 Rmu_sc0010633.1_g000010 Rmu_sc0011069.1_g000003 Rmu_sc0016170.1_g000002 Rmu_sc0025757.1_g000003 Rmu_ssc0000484.1_g000003
rosa_roxburghii Rroxscaffold_2G00134200 Rroxscaffold_4G00321030 Rroxscaffold_7G00213500
rosa_rugosa Rorug01G0283100 Rorug02G0160500 Rorug02G0535300 Rorug04G0027000 Rorug04G0328100 Rorug05G0388700 Rorug05G0530200 Rorug06G0489200 Rorug07G0104900 Rorug07G0209400 Rorug07G0274500
rosa_samantha Rh2BG222800 Rh2BG618900 Rh2CG214400 Rh2CG587200 Rh6BG040200 Rh6CG206500 Rh6DG035600 Rh7BG401600 Rh7BG401700 Rh7DG418400
rosa_wichuraiana Rw2G050240 Rw6G003920 Rw7G035430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 244
AccB1I GGYRCC 1 cut(s) 44
AccII CGCG 3 cut(s) 66, 223, 290
AciI CCGC 2 cut(s) 221, 290
AclWI GGATC 1 cut(s) 109
AcyI GRCGYC 1 cut(s) 45
AfaI GTAC 1 cut(s) 258
AgeI ACCGGT 1 cut(s) 266
AgsI TTSAA 2 cut(s) 22, 143
AloI GAACNNNNNNTCC 2 cut(s) 99, 131
AluBI AGCT 2 cut(s) 101, 158
AluI AGCT 2 cut(s) 101, 158
Alw26I GTCTC 1 cut(s) 251
AlwI GGATC 1 cut(s) 109
AsiGI ACCGGT 1 cut(s) 266
AspLEI GCGC 3 cut(s) 47, 68, 290
BanI GGYRCC 1 cut(s) 44
BanII GRGCYC 1 cut(s) 90
BccI CCATC 1 cut(s) 77
BclI TGATCA 1 cut(s) 150
BcoDI GTCTC 1 cut(s) 251
BfaI CTAG 1 cut(s) 216
BfoI RGCGCY 1 cut(s) 48
BfuAI ACCTGC 1 cut(s) 244
BmiI GGNNCC 1 cut(s) 46
BmsI GCATC 1 cut(s) 248
BpmI CTGGAG 1 cut(s) 184
BsaHI GRCGYC 1 cut(s) 45
BsaWI WCCGGW 1 cut(s) 266
Bse118I RCCGGY 2 cut(s) 47, 266
Bse1I ACTGG 2 cut(s) 46, 201
BseNI ACTGG 2 cut(s) 46, 201
BseYI CCCAGC 1 cut(s) 118
Bsh1236I CGCG 3 cut(s) 66, 223, 290
BshNI GGYRCC 1 cut(s) 44
BshTI ACCGGT 1 cut(s) 266
BsiSI CCGG 2 cut(s) 48, 267
BslFI GGGAC 2 cut(s) 44, 263
BsmAI GTCTC 1 cut(s) 251
BsmBI CGTCTC 1 cut(s) 251
BsmFI GGGAC 2 cut(s) 44, 263
Bsp1286I GDGCHC 1 cut(s) 90
Bsp1407I TGTACA 1 cut(s) 256
Bsp143I GATC 2 cut(s) 114, 150
BspACI CCGC 2 cut(s) 221, 290
BspFNI CGCG 3 cut(s) 66, 223, 290
BspLI GGNNCC 1 cut(s) 46
BspMI ACCTGC 1 cut(s) 244
BspPI GGATC 1 cut(s) 109
BspT107I GGYRCC 1 cut(s) 44
BsrFI RCCGGY 2 cut(s) 47, 266
BsrGI TGTACA 1 cut(s) 256
BsrI ACTGG 2 cut(s) 46, 201
BssAI RCCGGY 2 cut(s) 47, 266
BssMI GATC 2 cut(s) 114, 150
BssNI GRCGYC 1 cut(s) 45
Bst4CI ACNGT 1 cut(s) 94
BstACI GRCGYC 1 cut(s) 45
BstAUI TGTACA 1 cut(s) 256
BstC8I GCNNGC 2 cut(s) 49, 53
BstFNI CGCG 3 cut(s) 66, 223, 290
BstH2I RGCGCY 1 cut(s) 48
BstHHI GCGC 3 cut(s) 47, 68, 290
BstKTI GATC 2 cut(s) 117, 153
BstMAI GTCTC 1 cut(s) 251
BstMBI GATC 2 cut(s) 114, 150
BstMWI GCNNNNNNNGC 1 cut(s) 236
BstNSI RCATGY 1 cut(s) 59
BstUI CGCG 3 cut(s) 66, 223, 290
BtsIMutI CAGTG 2 cut(s) 90, 208
BveI ACCTGC 1 cut(s) 244
Cac8I GCNNGC 2 cut(s) 49, 53
CfoI GCGC 3 cut(s) 47, 68, 290
Cfr10I RCCGGY 2 cut(s) 47, 266
Csp6I GTAC 1 cut(s) 257
CspAI ACCGGT 1 cut(s) 266
CviAII CATG 2 cut(s) 56, 193
CviJI RGCY 6 cut(s) 88, 101, 122, 158, 230, 298
CviKI_1 RGCY 6 cut(s) 88, 101, 122, 158, 230, 298
CviQI GTAC 1 cut(s) 257
DinI GGCGCC 1 cut(s) 46
DpnI GATC 2 cut(s) 116, 152
DpnII GATC 2 cut(s) 114, 150
Eco24I GRGCYC 1 cut(s) 90
EcoT38I GRGCYC 1 cut(s) 90
EgeI GGCGCC 1 cut(s) 46
EheI GGCGCC 1 cut(s) 46
Esp3I CGTCTC 1 cut(s) 251
FaeI CATG 2 cut(s) 59, 196
FaiI YATR 2 cut(s) 57, 194
FaqI GGGAC 2 cut(s) 44, 263
FatI CATG 2 cut(s) 55, 192
FauI CCCGC 1 cut(s) 283
FbaI TGATCA 1 cut(s) 150
FriOI GRGCYC 1 cut(s) 90
FspBI CTAG 1 cut(s) 216
GlaI GCGC 3 cut(s) 46, 67, 289
GsaI CCCAGC 1 cut(s) 122
GsuI CTGGAG 1 cut(s) 184
HaeII RGCGCY 1 cut(s) 48
HapII CCGG 2 cut(s) 48, 267
HhaI GCGC 3 cut(s) 47, 68, 290
Hin1I GRCGYC 1 cut(s) 45
Hin1II CATG 2 cut(s) 59, 196
Hin6I GCGC 3 cut(s) 45, 66, 288
HinP1I GCGC 3 cut(s) 45, 66, 288
HindIII AAGCTT 2 cut(s) 99, 156
HpaII CCGG 2 cut(s) 48, 267
Hpy188I TCNGA 2 cut(s) 106, 251
Hpy99I CGWCG 1 cut(s) 228
HpyAV CCTTC 1 cut(s) 28
HpyCH4III ACNGT 1 cut(s) 94
HpyCH4V TGCA 2 cut(s) 4, 239
HpyF10VI GCNNNNNNNGC 1 cut(s) 236
Hsp92I GRCGYC 1 cut(s) 45
Hsp92II CATG 2 cut(s) 59, 196
HspAI GCGC 3 cut(s) 45, 66, 288
KasI GGCGCC 1 cut(s) 44
KroI GCCGGC 1 cut(s) 47
KroNI GCCGGC 1 cut(s) 49
Ksp22I TGATCA 1 cut(s) 150
Kzo9I GATC 2 cut(s) 114, 150
LpnPI CCDG 9 cut(s) 27, 61, 132, 214, 244, 249, 280, 284, 295
LweI GCATC 1 cut(s) 248
MaeI CTAG 1 cut(s) 216
MalI GATC 2 cut(s) 116, 152
MboI GATC 2 cut(s) 114, 150
MboII GAAGA 3 cut(s) 19, 64, 200
MhlI GDGCHC 1 cut(s) 90
Mly113I GGCGCC 1 cut(s) 45
MnlI CCTC 2 cut(s) 192, 208
MroNI GCCGGC 1 cut(s) 47
MspI CCGG 2 cut(s) 48, 267
MvnI CGCG 3 cut(s) 66, 223, 290
MwoI GCNNNNNNNGC 1 cut(s) 236
NaeI GCCGGC 1 cut(s) 49
NarI GGCGCC 1 cut(s) 45
NdeII GATC 2 cut(s) 114, 150
NgoMIV GCCGGC 1 cut(s) 47
NlaIII CATG 2 cut(s) 59, 196
NlaIV GGNNCC 1 cut(s) 46
NspI RCATGY 1 cut(s) 59
PdiI GCCGGC 1 cut(s) 49
PinAI ACCGGT 1 cut(s) 266
PluTI GGCGCC 1 cut(s) 48
PspFI CCCAGC 1 cut(s) 118
PspN4I GGNNCC 1 cut(s) 46
RsaI GTAC 1 cut(s) 258
RsaNI GTAC 1 cut(s) 257
Sau3AI GATC 2 cut(s) 114, 150
SduI GDGCHC 1 cut(s) 90
SetI ASST 5 cut(s) 103, 160, 200, 217, 238
SfaNI GCATC 1 cut(s) 248
SfoI GGCGCC 1 cut(s) 46
SgrAI CRCCGGYG 1 cut(s) 266
SsiI CCGC 2 cut(s) 221, 290
SspDI GGCGCC 1 cut(s) 44
SspMI CTAG 1 cut(s) 216
TaaI ACNGT 1 cut(s) 94
TaqI TCGA 4 cut(s) 78, 84, 173, 211
TatI WGTACW 1 cut(s) 256
TscAI CASTG 2 cut(s) 97, 208
TspDTI ATGAA 1 cut(s) 64
TspRI CASTG 2 cut(s) 97, 208
XceI RCATGY 1 cut(s) 59
XspI CTAG 1 cut(s) 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.