AT5G20410

Monogalactosyldiacylglycerol synthase 2

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
6896463 .. 6898783
2321 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G20410.1

Sequence Viewer

Length: 1407 bp
ATGGCGACGACGGTCATGGCCCTTGCAGAGAAAGTACTCGAAAGAGTTTACGGAACTTCCAAATCCGCCGTTTCCGTAACAAGCGGCGACGGCGAAAAGACTCACCGTCATACCCATCATCACATTCACCGTATCAAAAGCTACGACGACATCGACGAGGATGAATCATCATTGGAGCTTATCCAGATCGGTGCTGAGAGGACTAAGAACGTCTTGATCCTCATGAGCGATACTGGTGGCGGTCACCGTGCTTCCGCTGAAGCCATTCGTGACGCTTTCAAGATCGAATTCGGAGACAAATATAGAGTAATTGTGAAGGATGTGTGGAAGGAATACACAGGGTGGCCATTGAATGATATGGAGAGATCATATAAGTTCATGGTGAAGCATGTTCAGCTATGGAAAGTTGCTTTTCACAGCACATCACCCAAATGGATCCACTCTTGTTATCTAGCAGCCATTGCTGCTTATTACGCTAAGGAAGTAGAGGCTGGTTTAATGGAGTATAAGCCGGAGATAATCATTAGTGTTCATCCTTTAATGCAACATATTCCATTGTGGGTTCTTAAATGGCAAGAGCTACAAAAGAGAGTCCTTTTTGTTACTGTCATTACTGATCTCAACACTTGTCATCCTACTTGGTTTCATCCGGGGGTGAATAGGTGCTATTGCCCGTCTCAAGAAGTGGCGAAAAGGGCGTTGTTTGATGGGCTTGATGAGTCTCAAGTCCGTGTCTTTGGTTTACCTGTGAGGCCATCTTTTGCACGAGCGGTTTTGGTGAAGGATGATCTAAGAAAGGAGCTTGAGATGGATCAAGATCTTCGTGCGGTTCTACTGATGGGAGGAGGGGAAGGTATGGGTCCTGTGAAAGAAACAGCTAAAGCTCTTGAGGAATTTTTGTATGATAAAGAGAACAGGAAGCCTATTGGGCAAATGGTTGTTATCTGTGGACGTAACAAGAAATTGGCATCTGCATTAGAAGCCATTGACTGGAAGATTCCTGTTAAGGTTCGAGGATTTGAGACTCAAATGGAGAAATGGATGGGAGCTTGTGACTGCATCATCACAAAAGCTGGACCAGGAACAATCGCTGAATCGCTGATTCGATCACTTCCTATCATCCTCAACGATTACATTCCTGGACAGGAGAAAGGGAATGTGCCGTATGTAGTGGAGAATGGTGCAGGAGTATTCACAAGAAGTCCCAAAGAGACAGCTAGAATCGTTGGGGAATGGTTTAGCACAAAGACAGATGAGTTGGAACAAACTTCAGACAATGCACGTAAACTAGCTCAGCCTGAGGCAGTCTTCGACATTGTCAAAGACATTGATGAGCTCTCAGAGCAACGAGGTCCTCTTGCTAGCGTCTCTTACAATCTTACCTCTTCTTTTGCCAGTTTAGTTTGA

Protein Analysis

468

Amino Acids

52.73

Weight (kDa)

6.3

Isoelectric Point (pI)

34.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MGDG_synth PF06925 82 - 250 7.4e-66 Monogalactosyldiacylglycerol (MGDG) synthase
Glyco_tran_28_C PF04101 277 - 401 1.6e-07 Glycosyltransferase family 28 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 990
AccBSI CCGCTC 1 cut(s) 770
AciI CCGC 6 cut(s) 66, 84, 240, 255, 770, 827
AclWI GGATC 4 cut(s) 211, 430, 443, 819
AcoI YGGCCR 1 cut(s) 344
AcsI RAATTY 2 cut(s) 287, 893
AcuI CTGAAG 2 cut(s) 279, 1254
AdeI CACNNNGTG 1 cut(s) 342
AfaI GTAC 1 cut(s) 36
AfiI CCNNNNNNNGG 1 cut(s) 990
AgsI TTSAA 2 cut(s) 280, 352
AhdI GACNNNNNGTC 1 cut(s) 105
AjnI CCWGG 2 cut(s) 1078, 1138
Alw21I GWGCWC 1 cut(s) 1338
Alw26I GTCTC 6 cut(s) 288, 681, 726, 1016, 1205, 1372
AlwI GGATC 4 cut(s) 211, 430, 443, 819
AoxI GGCC 3 cut(s) 18, 344, 752
ApeKI GCWGC 2 cut(s) 455, 464
ApoI RAATTY 2 cut(s) 287, 893
Asp700I GAANNNNTTC 1 cut(s) 264
AspS9I GGNCC 4 cut(s) 19, 860, 1076, 1352
AsuC2I CCSGG 1 cut(s) 651
AsuHPI GGTGA 7 cut(s) 95, 119, 236, 394, 417, 667, 790
AsuNHI GCTAGC 1 cut(s) 1361
AvaII GGWCC 3 cut(s) 860, 1076, 1352
AxyI CCTNAGG 1 cut(s) 1299
BalI TGGCCA 1 cut(s) 346
BamHI GGATCC 1 cut(s) 435
BanII GRGCYC 1 cut(s) 1338
BauI CACGAG 1 cut(s) 765
BbsI GAAGAC 1 cut(s) 1300
Bbv12I GWGCWC 1 cut(s) 1338
BbvI GCAGC 2 cut(s) 451, 467
BccI CCATC 6 cut(s) 123, 701, 763, 802, 832, 1036
BceAI ACGGC 3 cut(s) 53, 106, 1147
BciT130I CCWGG 2 cut(s) 1080, 1140
BcnI CCSGG 1 cut(s) 651
BcoDI GTCTC 6 cut(s) 288, 681, 726, 1016, 1205, 1372
BfaI CTAG 4 cut(s) 452, 1218, 1289, 1362
BglI GCCNNNNNGGC 1 cut(s) 928
BglII AGATCT 1 cut(s) 817
BisI GCNGC 3 cut(s) 85, 456, 465
BlpI GCTNAGC 1 cut(s) 1293
BlsI GCNGC 3 cut(s) 86, 457, 466
BmcAI AGTACT 1 cut(s) 36
Bme1390I CCNGG 3 cut(s) 651, 1080, 1140
Bme18I GGWCC 3 cut(s) 860, 1076, 1352
BmeRI GACNNNNNGTC 1 cut(s) 105
BmgT120I GGNCC 4 cut(s) 19, 860, 1076, 1352
BmiI GGNNCC 2 cut(s) 437, 861
BmrFI CCNGG 3 cut(s) 651, 1080, 1140
BmsI GCATC 2 cut(s) 977, 1068
BmtI GCTAGC 1 cut(s) 1365
BoxI GACNNNNGTC 1 cut(s) 11
BpiI GAAGAC 1 cut(s) 1300
Bpu10I CCTNAGC 1 cut(s) 477
Bpu1102I GCTNAGC 1 cut(s) 1293
BpuEI CTTGAG 4 cut(s) 663, 708, 824, 908
BpuMI CCSGG 1 cut(s) 651
BsaAI YACGTR 1 cut(s) 1283
BsaBI GATNNNNATC 1 cut(s) 816
BsaJI CCNNGG 1 cut(s) 650
Bsc4I CCNNNNNNNGG 1 cut(s) 990
Bse1I ACTGG 3 cut(s) 238, 995, 1395
Bse21I CCTNAGG 1 cut(s) 1299
Bse3DI GCAATG 1 cut(s) 459
Bse8I GATNNNNATC 1 cut(s) 816
BseBI CCWGG 2 cut(s) 1080, 1140
BseDI CCNNGG 1 cut(s) 650
BseGI GGATG 8 cut(s) 166, 325, 532, 631, 646, 790, 1047, 1119
BseJI GATNNNNATC 1 cut(s) 816
BseLI CCNNNNNNNGG 1 cut(s) 990
BseMI GCAATG 1 cut(s) 459
BseMII CTCAG 4 cut(s) 186, 1290, 1307, 1353
BseNI ACTGG 3 cut(s) 238, 995, 1395
BseRI GAGGAG 1 cut(s) 858
BseXI GCAGC 2 cut(s) 451, 467
BsgI GTGCAG 1 cut(s) 1203
BshFI GGCC 3 cut(s) 20, 346, 754
BsiHKAI GWGCWC 1 cut(s) 1338
BsiSI CCGG 2 cut(s) 512, 650
BslFI GGGAC 1 cut(s) 1188
BslI CCNNNNNNNGG 1 cut(s) 990
BsmAI GTCTC 6 cut(s) 288, 681, 726, 1016, 1205, 1372
BsmBI CGTCTC 2 cut(s) 681, 1372
BsmFI GGGAC 1 cut(s) 1188
BsnI GGCC 3 cut(s) 20, 346, 754
Bsp1286I GDGCHC 1 cut(s) 1338
Bsp1720I GCTNAGC 1 cut(s) 1293
BspACI CCGC 6 cut(s) 66, 84, 240, 255, 770, 827
BspANI GGCC 3 cut(s) 20, 346, 754
BspCNI CTCAG 4 cut(s) 187, 1291, 1306, 1352
BspHI TCATGA 1 cut(s) 222
BspLI GGNNCC 2 cut(s) 437, 861
BspOI GCTAGC 1 cut(s) 1365
BspPI GGATC 4 cut(s) 211, 430, 443, 819
BsrBI CCGCTC 1 cut(s) 770
BsrDI GCAATG 1 cut(s) 459
BsrI ACTGG 3 cut(s) 238, 995, 1395
BssECI CCNNGG 1 cut(s) 650
BssSI CACGAG 1 cut(s) 765
Bst2BI CACGAG 1 cut(s) 765
Bst2UI CCWGG 2 cut(s) 1080, 1140
Bst4CI ACNGT 5 cut(s) 13, 107, 131, 248, 607
Bst6I CTCTTC 1 cut(s) 1390
BstAPI GCANNNNNTGC 1 cut(s) 461
BstBAI YACGTR 1 cut(s) 1283
BstC8I GCNNGC 1 cut(s) 1363
BstDEI CTNAG 7 cut(s) 195, 204, 477, 791, 1293, 1299, 1339
BstEII GGTNACC 1 cut(s) 242
BstF5I GGATG 8 cut(s) 166, 325, 532, 631, 646, 790, 1047, 1119
BstMAI GTCTC 6 cut(s) 288, 681, 726, 1016, 1205, 1372
BstMWI GCNNNNNNNGC 9 cut(s) 90, 394, 461, 464, 473, 695, 928, 980, 1342
BstNI CCWGG 2 cut(s) 1080, 1140
BstNSI RCATGY 1 cut(s) 392
BstPAI GACNNNNGTC 1 cut(s) 11
BstPI GGTNACC 1 cut(s) 242
BstSCI CCNGG 3 cut(s) 649, 1078, 1138
BstV1I GCAGC 2 cut(s) 451, 467
BstV2I GAAGAC 1 cut(s) 1300
BstX2I RGATCY 2 cut(s) 435, 817
BstYI RGATCY 2 cut(s) 435, 817
Bsu36I CCTNAGG 1 cut(s) 1299
BsuRI GGCC 3 cut(s) 20, 346, 754
BtsCI GGATG 8 cut(s) 166, 325, 532, 631, 646, 790, 1047, 1119
Cac8I GCNNGC 1 cut(s) 1363
CciI TCATGA 1 cut(s) 222
Cfr13I GGNCC 4 cut(s) 19, 860, 1076, 1352
CseI GACGC 2 cut(s) 281, 1354
Csp6I GTAC 1 cut(s) 35
CviAII CATG 4 cut(s) 16, 223, 379, 389
CviQI GTAC 1 cut(s) 35
DdeI CTNAG 7 cut(s) 195, 204, 477, 791, 1293, 1299, 1339
DraIII CACNNNGTG 1 cut(s) 342
DriI GACNNNNNGTC 1 cut(s) 105
EaeI YGGCCR 1 cut(s) 344
Eam1104I CTCTTC 1 cut(s) 1390
Eam1105I GACNNNNNGTC 1 cut(s) 105
EarI CTCTTC 1 cut(s) 1390
EciI GGCGGA 1 cut(s) 55
Ecl136II GAGCTC 1 cut(s) 1336
Eco24I GRGCYC 1 cut(s) 1338
Eco47I GGWCC 3 cut(s) 860, 1076, 1352
Eco53kI GAGCTC 1 cut(s) 1336
Eco57I CTGAAG 2 cut(s) 279, 1254
Eco81I CCTNAGG 1 cut(s) 1299
Eco91I GGTNACC 1 cut(s) 242
EcoICRI GAGCTC 1 cut(s) 1336
EcoO109I RGGNCCY 2 cut(s) 860, 1352
EcoO65I GGTNACC 1 cut(s) 242
EcoRI GAATTC 1 cut(s) 287
EcoRII CCWGG 2 cut(s) 1078, 1138
EcoT38I GRGCYC 1 cut(s) 1338
Esp3I CGTCTC 2 cut(s) 681, 1372
FaeI CATG 4 cut(s) 19, 226, 382, 392
FalI AAGNNNNNCTT 2 cut(s) 197, 229
FaqI GGGAC 1 cut(s) 1188
FatI CATG 4 cut(s) 15, 222, 378, 388
Fnu4HI GCNGC 3 cut(s) 85, 456, 465
FokI GGATG 8 cut(s) 173, 332, 519, 618, 633, 797, 1054, 1106
FriOI GRGCYC 1 cut(s) 1338
Fsp4HI GCNGC 3 cut(s) 85, 456, 465
FspBI CTAG 4 cut(s) 452, 1218, 1289, 1362
GluI GCNGC 3 cut(s) 85, 456, 465
HaeIII GGCC 3 cut(s) 20, 346, 754
HapII CCGG 2 cut(s) 512, 650
HgaI GACGC 2 cut(s) 281, 1354
Hin1II CATG 4 cut(s) 19, 226, 382, 392
HinfI GANTC 9 cut(s) 100, 164, 591, 719, 997, 1024, 1094, 1102, 1221
HpaII CCGG 2 cut(s) 512, 650
HphI GGTGA 7 cut(s) 95, 119, 236, 394, 417, 667, 790
Hpy166II GTNNAC 4 cut(s) 49, 743, 950, 1286
Hpy188I TCNGA 3 cut(s) 293, 1273, 1342
Hpy188III TCNNGA 8 cut(s) 184, 214, 223, 269, 280, 680, 815, 887
Hpy8I GTNNAC 4 cut(s) 49, 743, 950, 1286
Hpy99I CGWCG 5 cut(s) 10, 13, 92, 149, 158
HpyAV CCTTC 4 cut(s) 310, 322, 775, 845
HpyCH4III ACNGT 5 cut(s) 13, 107, 131, 248, 607
HpyCH4IV ACGT 3 cut(s) 210, 952, 1282
HpyCH4V TGCA 7 cut(s) 26, 544, 764, 974, 1059, 1184, 1280
HpyF10VI GCNNNNNNNGC 9 cut(s) 90, 394, 461, 464, 473, 695, 928, 980, 1342
HpyF3I CTNAG 7 cut(s) 195, 204, 477, 791, 1293, 1299, 1339
HpySE526I ACGT 3 cut(s) 210, 952, 1282
Hsp92II CATG 4 cut(s) 19, 226, 382, 392
LmnI GCTCC 3 cut(s) 175, 799, 1046
Lsp1109I GCAGC 2 cut(s) 451, 467
LweI GCATC 2 cut(s) 977, 1068
MaeI CTAG 4 cut(s) 452, 1218, 1289, 1362
MaeII ACGT 3 cut(s) 210, 952, 1282
MaeIII GTNAC 6 cut(s) 76, 242, 269, 601, 953, 1052
MbiI CCGCTC 1 cut(s) 770
MboII GAAGA 4 cut(s) 812, 1006, 1300, 1377
MflI RGATCY 2 cut(s) 435, 817
MhlI GDGCHC 1 cut(s) 1338
MlsI TGGCCA 1 cut(s) 346
MluCI AATT 4 cut(s) 287, 309, 893, 962
MluNI TGGCCA 1 cut(s) 346
MlyI GAGTC 4 cut(s) 94, 600, 728, 1018
MmeI TCCRAC 1 cut(s) 1239
Mox20I TGGCCA 1 cut(s) 346
MroXI GAANNNNTTC 1 cut(s) 264
MscI TGGCCA 1 cut(s) 346
MseI TTAA 4 cut(s) 497, 539, 567, 1005
MslI CAYNNNNRTG 1 cut(s) 430
Msp20I TGGCCA 1 cut(s) 346
MspA1I CMGCKG 1 cut(s) 257
MspI CCGG 2 cut(s) 512, 650
MspR9I CCNGG 3 cut(s) 651, 1080, 1140
MvaI CCWGG 2 cut(s) 1080, 1140
MwoI GCNNNNNNNGC 9 cut(s) 90, 394, 461, 464, 473, 695, 928, 980, 1342
NciI CCSGG 1 cut(s) 651
NheI GCTAGC 1 cut(s) 1361
NlaIII CATG 4 cut(s) 19, 226, 382, 392
NlaIV GGNNCC 2 cut(s) 437, 861
NmuCI GTSAC 3 cut(s) 242, 269, 1052
NspI RCATGY 1 cut(s) 392
PagI TCATGA 1 cut(s) 222
PcsI WCGNNNNNNNCGW 2 cut(s) 150, 153
PdmI GAANNNNTTC 1 cut(s) 264
PfeI GAWTC 5 cut(s) 164, 997, 1094, 1102, 1221
PflFI GACNNNGTC 1 cut(s) 1316
PflMI CCANNNNNTGG 1 cut(s) 990
PfoI TCCNGGA 1 cut(s) 1138
PkrI GCNGC 3 cut(s) 86, 457, 466
PleI GAGTC 4 cut(s) 94, 599, 727, 1018
PpsI GAGTC 4 cut(s) 94, 599, 727, 1018
Ppu21I YACGTR 1 cut(s) 1283
PpuMI RGGWCCY 2 cut(s) 860, 1352
PshAI GACNNNNGTC 1 cut(s) 11
Psp124BI GAGCTC 1 cut(s) 1338
Psp5II RGGWCCY 2 cut(s) 860, 1352
Psp6I CCWGG 2 cut(s) 1078, 1138
PspEI GGTNACC 1 cut(s) 242
PspGI CCWGG 2 cut(s) 1078, 1138
PspN4I GGNNCC 2 cut(s) 437, 861
PspPI GGNCC 4 cut(s) 19, 860, 1076, 1352
PspPPI RGGWCCY 2 cut(s) 860, 1352
PsuI RGATCY 2 cut(s) 435, 817
PsyI GACNNNGTC 1 cut(s) 1316
RsaI GTAC 1 cut(s) 36
RsaNI GTAC 1 cut(s) 35
RseI CAYNNNNRTG 1 cut(s) 430
SacI GAGCTC 1 cut(s) 1338
SaqAI TTAA 4 cut(s) 497, 539, 567, 1005
SatI GCNGC 3 cut(s) 85, 456, 465
Sau96I GGNCC 4 cut(s) 19, 860, 1076, 1352
ScaI AGTACT 1 cut(s) 36
SchI GAGTC 4 cut(s) 94, 600, 728, 1018
ScrFI CCNGG 3 cut(s) 651, 1080, 1140
SduI GDGCHC 1 cut(s) 1338
SfaNI GCATC 2 cut(s) 977, 1068
SinI GGWCC 3 cut(s) 860, 1076, 1352
SmiMI CAYNNNNRTG 1 cut(s) 430
SmlI CTYRAG 4 cut(s) 678, 723, 803, 887
SmoI CTYRAG 4 cut(s) 678, 723, 803, 887
Sse9I AATT 4 cut(s) 287, 309, 893, 962
SsiI CCGC 6 cut(s) 66, 84, 240, 255, 770, 827
SspMI CTAG 4 cut(s) 452, 1218, 1289, 1362
SstI GAGCTC 1 cut(s) 1338
StyD4I CCNGG 3 cut(s) 649, 1078, 1138
TaaI ACNGT 5 cut(s) 13, 107, 131, 248, 607
TaiI ACGT 3 cut(s) 213, 955, 1285
TaqI TCGA 6 cut(s) 39, 153, 285, 1012, 1105, 1311
TasI AATT 4 cut(s) 287, 309, 893, 962
TatI WGTACW 1 cut(s) 34
TauI GCSGC 1 cut(s) 87
TfiI GAWTC 5 cut(s) 164, 997, 1094, 1102, 1221
Tru1I TTAA 4 cut(s) 497, 539, 567, 1005
Tru9I TTAA 4 cut(s) 497, 539, 567, 1005
TseFI GTSAC 3 cut(s) 242, 269, 1052
TseI GCWGC 2 cut(s) 455, 464
Tsp45I GTSAC 3 cut(s) 242, 269, 1052
TspDTI ATGAA 4 cut(s) 177, 367, 521, 635
TspGWI ACGGA 3 cut(s) 64, 66, 719
Tth111I GACNNNGTC 1 cut(s) 1316
Van91I CCANNNNNTGG 1 cut(s) 990
VpaK11BI GGWCC 3 cut(s) 860, 1076, 1352
XapI RAATTY 2 cut(s) 287, 893
XceI RCATGY 1 cut(s) 392
XmnI GAANNNNTTC 1 cut(s) 264
XspI CTAG 4 cut(s) 452, 1218, 1289, 1362
ZrmI AGTACT 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.