Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001366

Physical Location & Seq

Genomic Coordinates Reverse (-)

27844632 .. 27845188

Gene Structure 557 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ44665

Sequence Viewer

CDS Protein Promoter (2k)

Length: 222 bp

ATGCGTTTCGGTTGGAGACGAATACAGGCTGACTTTTTGTTCTGTGTATTTGTGAAGCATGTGCGGAAAGAGTACACAGGTTGGCCTTTAAATAATATGGAGAGGTCTTACAAGTTCATGGTGAAACATGTTCAGCTATGGAAGGTTGCACTTCACAGTACTTCTCCTAGATGGATCCACAGTGTCTATCTTGCTGCCATTGCAGCCTACTATGCCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006643 GO:0006664 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008194 GO:0008378 GO:0009267 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009605 GO:0009707 GO:0009941 GO:0009987 GO:0009991 GO:0016020 GO:0016036 GO:0016740 GO:0016757 GO:0016758 GO:0019374 GO:0019752 GO:0019867 GO:0031090 GO:0031667 GO:0031668 GO:0031669 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032787 GO:0033554 GO:0035250 GO:0042170 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0071496 GO:0071704 GO:0098588 GO:0098805 GO:1901135 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00561 ko01100 map00561 map01100

Pfam Domains

Protein Families

Glyco_tran_28_C MGDG_synth

Protein Analysis

73

Amino Acids

8.88

Weight (kDa)

10.24

Isoelectric Point (pI)

40.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MGDG_synth	PF06925	16 - 73	6.8e-10	Monogalactosyldiacylglycerol (MGDG) synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001366)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G11810 AT2G11810 AT2G11810 AT2G11810 AT5G20410
fragaria_vesca	FvH4_1g02220 FvH4_1g02220 FvH4_1g02220 FvH4_1g21680
malus_domestica	MD02G1020400.v1.1 MD15G1163200.v1.1
prunus_persica	Prupe.7G251400_v2.0.a1
pyrus_communis	pycom02g01790 pycom15g14680
rosa_chinensis	RchiOBHm_Chr2g0087331 RchiOBHm_Chr3g0481741 RchiOBHm_Chr4g0421821 RchiOBHm_Chr6g0246901
rosa_laevigata	RLG00000003836 RLG00000015857
rosa_multiflora	Rmu_co8187728.1_g000001 Rmu_co8222200.1_g000001 Rmu_sc0000540.1_g000032 Rmu_sc0003367.1_g000024 Rmu_sc0006064.1_g000001 Rmu_sc0007105.1_g000003 Rmu_sc0016592.1_g000001 Rmu_sc0037595.1_g000001
rosa_roxburghii	Rroxscaffold_1G00028410 Rroxscaffold_2G00111080 Rroxscaffold_2G00153680 Rroxscaffold_3G00242830 Rroxscaffold_4G00276430 Rroxscaffold_4G00300210 Rroxscaffold_7G00214190
rosa_rugosa	Rorug01G0474200
rosa_samantha	Rh1CG122800 Rh2AG027800 Rh2AG631400 Rh2BG027300 Rh2BG300600 Rh2CG028100 Rh2DG027900 Rh4BG234200 Rh5CG220000 Rh6BG190700 Rh6CG106700 Rh6CG108200 Rh6DG097200 Rh6DG098600 Rh7CG224800
rosa_wichuraiana	Rw1G013320 Rw2G002200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	64
AclWI	GGATC	2 cut(s)	169, 182
AfaI	GTAC	2 cut(s)	74, 160
AflIII	ACRYGT	1 cut(s)	127
AluBI	AGCT	1 cut(s)	136
AluI	AGCT	1 cut(s)	136
Alw26I	GTCTC	1 cut(s)	10
AlwI	GGATC	2 cut(s)	169, 182
AoxI	GGCC	1 cut(s)	83
ApeKI	GCWGC	2 cut(s)	194, 203
AsuHPI	GGTGA	1 cut(s)	133
BamHI	GGATCC	1 cut(s)	174
BbvI	GCAGC	2 cut(s)	181, 215
BccI	CCATC	1 cut(s)	165
BcoDI	GTCTC	1 cut(s)	10
BfaI	CTAG	1 cut(s)	168
BisI	GCNGC	2 cut(s)	195, 204
BlsI	GCNGC	2 cut(s)	196, 205
BmcAI	AGTACT	1 cut(s)	160
BmiI	GGNNCC	1 cut(s)	176
Bse3DI	GCAATG	1 cut(s)	198
BseMI	GCAATG	1 cut(s)	198
BseXI	GCAGC	2 cut(s)	181, 215
BshFI	GGCC	1 cut(s)	85
BsmAI	GTCTC	1 cut(s)	10
BsmBI	CGTCTC	1 cut(s)	10
BsnI	GGCC	1 cut(s)	85
Bsp143I	GATC	1 cut(s)	174
BspACI	CCGC	1 cut(s)	64
BspANI	GGCC	1 cut(s)	85
BspLI	GGNNCC	1 cut(s)	176
BspPI	GGATC	2 cut(s)	169, 182
BsrDI	GCAATG	1 cut(s)	198
BssMI	GATC	1 cut(s)	174
Bst4CI	ACNGT	2 cut(s)	158, 182
BstKTI	GATC	1 cut(s)	177
BstMAI	GTCTC	1 cut(s)	10
BstMBI	GATC	1 cut(s)	174
BstMWI	GCNNNNNNNGC	3 cut(s)	200, 203, 212
BstNSI	RCATGY	2 cut(s)	62, 131
BstV1I	GCAGC	2 cut(s)	181, 215
BstX2I	RGATCY	1 cut(s)	174
BstYI	RGATCY	1 cut(s)	174
BsuRI	GGCC	1 cut(s)	85
BtsIMutI	CAGTG	1 cut(s)	187
Csp6I	GTAC	2 cut(s)	73, 159
CviAII	CATG	3 cut(s)	59, 118, 128
CviJI	RGCY	4 cut(s)	29, 85, 136, 206
CviKI_1	RGCY	4 cut(s)	29, 85, 136, 206
CviQI	GTAC	2 cut(s)	73, 159
DpnI	GATC	1 cut(s)	176
DpnII	GATC	1 cut(s)	174
DraI	TTTAAA	1 cut(s)	90
Esp3I	CGTCTC	1 cut(s)	10
FaeI	CATG	3 cut(s)	62, 121, 131
FaiI	YATR	6 cut(s)	60, 98, 119, 129, 139, 213
FatI	CATG	3 cut(s)	58, 117, 127
Fnu4HI	GCNGC	2 cut(s)	195, 204
Fsp4HI	GCNGC	2 cut(s)	195, 204
FspBI	CTAG	1 cut(s)	168
GluI	GCNGC	2 cut(s)	195, 204
HaeIII	GGCC	1 cut(s)	85
Hin1II	CATG	3 cut(s)	62, 121, 131
HphI	GGTGA	1 cut(s)	133
Hpy166II	GTNNAC	1 cut(s)	75
Hpy8I	GTNNAC	1 cut(s)	75
HpyAV	CCTTC	1 cut(s)	136
HpyCH4III	ACNGT	2 cut(s)	158, 182
HpyCH4V	TGCA	2 cut(s)	149, 203
HpyF10VI	GCNNNNNNNGC	3 cut(s)	200, 203, 212
Hsp92II	CATG	3 cut(s)	62, 121, 131
Kzo9I	GATC	1 cut(s)	174
LpnPI	CCDG	2 cut(s)	11, 63
Lsp1109I	GCAGC	2 cut(s)	181, 215
MaeI	CTAG	1 cut(s)	168
MalI	GATC	1 cut(s)	176
MboI	GATC	1 cut(s)	174
MflI	RGATCY	1 cut(s)	174
MnlI	CCTC	1 cut(s)	96
MseI	TTAA	1 cut(s)	89
MwoI	GCNNNNNNNGC	3 cut(s)	200, 203, 212
NdeII	GATC	1 cut(s)	174
NlaIII	CATG	3 cut(s)	62, 121, 131
NlaIV	GGNNCC	1 cut(s)	176
NspI	RCATGY	2 cut(s)	62, 131
PciI	ACATGT	1 cut(s)	127
PkrI	GCNGC	2 cut(s)	196, 205
PscI	ACATGT	1 cut(s)	127
PspN4I	GGNNCC	1 cut(s)	176
PsuI	RGATCY	1 cut(s)	174
RsaI	GTAC	2 cut(s)	74, 160
RsaNI	GTAC	2 cut(s)	73, 159
SaqAI	TTAA	1 cut(s)	89
SatI	GCNGC	2 cut(s)	195, 204
Sau3AI	GATC	1 cut(s)	174
ScaI	AGTACT	1 cut(s)	160
SetI	ASST	4 cut(s)	82, 107, 138, 147
SgeI	CNNG	8 cut(s)	38, 71, 90, 124, 130, 140, 180, 203
SsiI	CCGC	1 cut(s)	64
SspMI	CTAG	1 cut(s)	168
TaaI	ACNGT	2 cut(s)	158, 182
TatI	WGTACW	2 cut(s)	72, 158
Tru1I	TTAA	1 cut(s)	89
Tru9I	TTAA	1 cut(s)	89
TscAI	CASTG	1 cut(s)	187
TseI	GCWGC	2 cut(s)	194, 203
TspDTI	ATGAA	1 cut(s)	106
TspRI	CASTG	1 cut(s)	187
XceI	RCATGY	2 cut(s)	62, 131
XspI	CTAG	1 cut(s)	168
ZrmI	AGTACT	1 cut(s)	160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.