Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001366

Physical Location & Seq

Genomic Coordinates Forward (+)

20391962 .. 20393874

Gene Structure 1913 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00300210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGAAGGAAGAGCAGCATCGGGCGAATTCCAGCTCGAGCTGTGCAGCTTCTCGGCCTCCTAGCGCCTTCCACGTATTTGTGAAGGATGTGTGGAAAGAATACACAGGTTGGCCTTTAAATAATATAGAGAGGTCTTACAAGTTCATGGTGAAACATGTTCAGCTATGGAAGGTTGCATTTCACGAGGAGGTGGAGGCTGGTCTAATGGAGTACAAGCCGGACATCATAATTAGTGTTTATCCTTTGATGCAAATATTCCTCTTTTCTCAAATGGCAAGGACTTCGAAGAAGGTGATTTTTGTGACGGTGATTGCGATCTCAACACTTGCCATCCTACGTGATCAGTTTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006643 GO:0006664 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008194 GO:0008378 GO:0009267 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009605 GO:0009707 GO:0009941 GO:0009987 GO:0009991 GO:0016020 GO:0016036 GO:0016740 GO:0016757 GO:0016758 GO:0019374 GO:0019752 GO:0019867 GO:0031090 GO:0031667 GO:0031668 GO:0031669 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032787 GO:0033554 GO:0035250 GO:0042170 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0071496 GO:0071704 GO:0098588 GO:0098805 GO:1901135 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00561 ko01100 map00561 map01100

Pfam Domains

Protein Families

Glyco_tran_28_C MGDG_synth

Protein Analysis

117

Amino Acids

13.63

Weight (kDa)

8.74

Isoelectric Point (pI)

46.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MGDG_synth	PF06925	22 - 62	1.5e-07	Monogalactosyldiacylglycerol (MGDG) synthase
MGDG_synth	PF06925	61 - 104	5.7e-06	Monogalactosyldiacylglycerol (MGDG) synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0001366)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G11810 AT2G11810 AT2G11810 AT2G11810 AT5G20410
fragaria_vesca	FvH4_1g02220 FvH4_1g02220 FvH4_1g02220 FvH4_1g21680
malus_domestica	MD02G1020400.v1.1 MD15G1163200.v1.1
prunus_persica	Prupe.7G251400_v2.0.a1
pyrus_communis	pycom02g01790 pycom15g14680
rosa_chinensis	RchiOBHm_Chr2g0087331 RchiOBHm_Chr3g0481741 RchiOBHm_Chr4g0421821 RchiOBHm_Chr6g0246901
rosa_laevigata	RLG00000003836 RLG00000015857
rosa_multiflora	Rmu_co8187728.1_g000001 Rmu_co8222200.1_g000001 Rmu_sc0000540.1_g000032 Rmu_sc0003367.1_g000024 Rmu_sc0006064.1_g000001 Rmu_sc0007105.1_g000003 Rmu_sc0016592.1_g000001 Rmu_sc0037595.1_g000001
rosa_roxburghii	Rroxscaffold_1G00028410 Rroxscaffold_2G00111080 Rroxscaffold_2G00153680 Rroxscaffold_3G00242830 Rroxscaffold_4G00276430 Rroxscaffold_4G00300210 Rroxscaffold_7G00214190
rosa_rugosa	Rorug01G0474200
rosa_samantha	Rh1CG122800 Rh2AG027800 Rh2AG631400 Rh2BG027300 Rh2BG300600 Rh2CG028100 Rh2DG027900 Rh4BG234200 Rh5CG220000 Rh6BG190700 Rh6CG106700 Rh6CG108200 Rh6DG097200 Rh6DG098600 Rh7CG224800
rosa_wichuraiana	Rw1G013320 Rw2G002200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	25
AfaI	GTAC	1 cut(s)	212
AflIII	ACRYGT	1 cut(s)	154
AluBI	AGCT	4 cut(s)	33, 39, 47, 163
AluI	AGCT	4 cut(s)	33, 39, 47, 163
Ama87I	CYCGRG	1 cut(s)	34
AoxI	GGCC	2 cut(s)	53, 110
ApeKI	GCWGC	2 cut(s)	13, 44
ApoI	RAATTY	1 cut(s)	25
AspLEI	GCGC	1 cut(s)	65
AsuHPI	GGTGA	3 cut(s)	160, 304, 319
AsuII	TTCGAA	1 cut(s)	284
AvaI	CYCGRG	1 cut(s)	34
BauI	CACGAG	1 cut(s)	182
BbvI	GCAGC	2 cut(s)	25, 56
BccI	CCATC	1 cut(s)	338
BcgI	CGANNNNNNTGC	2 cut(s)	264, 298
BclI	TGATCA	1 cut(s)	340
BfaI	CTAG	1 cut(s)	60
BfoI	RGCGCY	1 cut(s)	66
BisI	GCNGC	2 cut(s)	14, 45
BlsI	GCNGC	2 cut(s)	15, 46
BmeT110I	CYCGRG	1 cut(s)	34
BmsI	GCATC	2 cut(s)	25, 237
Bpu14I	TTCGAA	1 cut(s)	284
BsaAI	YACGTR	2 cut(s)	73, 338
BsaBI	GATNNNNATC	1 cut(s)	314
Bse8I	GATNNNNATC	1 cut(s)	314
BseGI	GGATG	2 cut(s)	91, 330
BseJI	GATNNNNATC	1 cut(s)	314
BseRI	GAGGAG	1 cut(s)	200
BseXI	GCAGC	2 cut(s)	25, 56
BsgI	GTGCAG	1 cut(s)	63
BshFI	GGCC	2 cut(s)	55, 112
BsiHKCI	CYCGRG	1 cut(s)	34
BsiSI	CCGG	1 cut(s)	218
BsnI	GGCC	2 cut(s)	55, 112
BsoBI	CYCGRG	1 cut(s)	34
Bsp119I	TTCGAA	1 cut(s)	284
Bsp143I	GATC	2 cut(s)	315, 340
BspANI	GGCC	2 cut(s)	55, 112
BspQI	GCTCTTC	1 cut(s)	3
BspT104I	TTCGAA	1 cut(s)	284
BssMI	GATC	2 cut(s)	315, 340
BssSI	CACGAG	1 cut(s)	182
Bst2BI	CACGAG	1 cut(s)	182
Bst4CI	ACNGT	1 cut(s)	307
Bst6I	CTCTTC	1 cut(s)	3
BstBAI	YACGTR	2 cut(s)	73, 338
BstBI	TTCGAA	1 cut(s)	284
BstF5I	GGATG	2 cut(s)	91, 330
BstH2I	RGCGCY	1 cut(s)	66
BstHHI	GCGC	1 cut(s)	65
BstKTI	GATC	2 cut(s)	318, 343
BstMBI	GATC	2 cut(s)	315, 340
BstNSI	RCATGY	1 cut(s)	158
BstV1I	GCAGC	2 cut(s)	25, 56
BsuRI	GGCC	2 cut(s)	55, 112
BtsCI	GGATG	2 cut(s)	91, 330
CfoI	GCGC	1 cut(s)	65
Csp6I	GTAC	1 cut(s)	211
CviAII	CATG	2 cut(s)	145, 155
CviJI	RGCY	8 cut(s)	33, 39, 47, 55, 112, 163, 197, 217
CviKI_1	RGCY	8 cut(s)	33, 39, 47, 55, 112, 163, 197, 217
CviQI	GTAC	1 cut(s)	211
DpnI	GATC	2 cut(s)	317, 342
DpnII	GATC	2 cut(s)	315, 340
DraI	TTTAAA	1 cut(s)	117
Eam1104I	CTCTTC	1 cut(s)	3
EarI	CTCTTC	1 cut(s)	3
Eco88I	CYCGRG	1 cut(s)	34
EcoRI	GAATTC	1 cut(s)	25
FaeI	CATG	2 cut(s)	148, 158
FaiI	YATR	5 cut(s)	125, 146, 156, 166, 227
FatI	CATG	2 cut(s)	144, 154
FbaI	TGATCA	1 cut(s)	340
Fnu4HI	GCNGC	2 cut(s)	14, 45
FokI	GGATG	2 cut(s)	98, 317
Fsp4HI	GCNGC	2 cut(s)	14, 45
FspBI	CTAG	1 cut(s)	60
GlaI	GCGC	1 cut(s)	64
GluI	GCNGC	2 cut(s)	14, 45
HaeII	RGCGCY	1 cut(s)	66
HaeIII	GGCC	2 cut(s)	55, 112
HapII	CCGG	1 cut(s)	218
HhaI	GCGC	1 cut(s)	65
Hin1II	CATG	2 cut(s)	148, 158
Hin6I	GCGC	1 cut(s)	63
HinP1I	GCGC	1 cut(s)	63
HpaII	CCGG	1 cut(s)	218
HphI	GGTGA	3 cut(s)	160, 304, 319
Hpy188III	TCNNGA	1 cut(s)	182
HpyAV	CCTTC	4 cut(s)	76, 76, 163, 283
HpyCH4III	ACNGT	1 cut(s)	307
HpyCH4IV	ACGT	2 cut(s)	72, 337
HpyCH4V	TGCA	3 cut(s)	44, 176, 250
HpySE526I	ACGT	2 cut(s)	72, 337
Hsp92II	CATG	2 cut(s)	148, 158
HspAI	GCGC	1 cut(s)	63
Ksp22I	TGATCA	1 cut(s)	340
Kzo9I	GATC	2 cut(s)	315, 340
LguI	GCTCTTC	1 cut(s)	3
LpnPI	CCDG	4 cut(s)	43, 90, 183, 231
Lsp1109I	GCAGC	2 cut(s)	25, 56
LweI	GCATC	2 cut(s)	25, 237
MaeI	CTAG	1 cut(s)	60
MaeII	ACGT	2 cut(s)	72, 337
MaeIII	GTNAC	1 cut(s)	301
MalI	GATC	2 cut(s)	317, 342
MboI	GATC	2 cut(s)	315, 340
MboII	GAAGA	2 cut(s)	20, 298
MluCI	AATT	2 cut(s)	25, 228
MnlI	CCTC	6 cut(s)	66, 123, 178, 181, 187, 269
MseI	TTAA	1 cut(s)	116
MspI	CCGG	1 cut(s)	218
NdeII	GATC	2 cut(s)	315, 340
NlaIII	CATG	2 cut(s)	148, 158
NmeAIII	GCCGAG	1 cut(s)	31
NmuCI	GTSAC	1 cut(s)	301
NspI	RCATGY	1 cut(s)	158
NspV	TTCGAA	1 cut(s)	284
PaeR7I	CTCGAG	1 cut(s)	34
PciI	ACATGT	1 cut(s)	154
PciSI	GCTCTTC	1 cut(s)	3
PcsI	WCGNNNNNNNCGW	1 cut(s)	311
PkrI	GCNGC	2 cut(s)	15, 46
Ppu21I	YACGTR	2 cut(s)	73, 338
PscI	ACATGT	1 cut(s)	154
PspXI	VCTCGAGB	1 cut(s)	34
RsaI	GTAC	1 cut(s)	212
RsaNI	GTAC	1 cut(s)	211
SapI	GCTCTTC	1 cut(s)	3
SaqAI	TTAA	1 cut(s)	116
SatI	GCNGC	2 cut(s)	14, 45
Sau3AI	GATC	2 cut(s)	315, 340
SfaNI	GCATC	2 cut(s)	25, 237
Sfr274I	CTCGAG	1 cut(s)	34
SfuI	TTCGAA	1 cut(s)	284
SlaI	CTCGAG	1 cut(s)	34
SmlI	CTYRAG	1 cut(s)	34
SmoI	CTYRAG	1 cut(s)	34
Sse9I	AATT	2 cut(s)	25, 228
SspI	AATATT	1 cut(s)	255
SspMI	CTAG	1 cut(s)	60
TaaI	ACNGT	1 cut(s)	307
TaiI	ACGT	2 cut(s)	75, 340
TaqI	TCGA	2 cut(s)	35, 284
TasI	AATT	2 cut(s)	25, 228
TatI	WGTACW	1 cut(s)	210
Tru1I	TTAA	1 cut(s)	116
Tru9I	TTAA	1 cut(s)	116
TseFI	GTSAC	1 cut(s)	301
TseI	GCWGC	2 cut(s)	13, 44
Tsp45I	GTSAC	1 cut(s)	301
TspDTI	ATGAA	2 cut(s)	17, 133
XapI	RAATTY	1 cut(s)	25
XceI	RCATGY	1 cut(s)	158
XhoI	CTCGAG	1 cut(s)	34
XspI	CTAG	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.