Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006064.1

Orthogroup ID

OG0001366

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 806

Gene Structure 806 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006064.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 460 bp

tggccgcaataaaaacctggtctccacactggaatctgatgagtggaatatcccagtcaaggttagaggatttgagacacaaatggagaaatggatgggatcttgtgactgcatcataacaaaggctggtccaggcacaatcgcggaggcattgatcagagggcttcctattattctcaatgactacattcctggacaagaaaagggcaatgtgccttatgtggtagacaatggtgctggtgtcttcaccagaagccccaaagaaacagccaggattgtggcagaatggttcagcaccaagccggatgagctcaaaaggatgtctgagaatgcacttaaactagcgcaaccggaggctgttttcgacattgttaaggacattcacgatctcgcctgccaacgtggtcctcttgcaaacatcccttacatgctgacgtcctcatttacaagtataatctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006643 GO:0006664 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008194 GO:0008378 GO:0009267 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009605 GO:0009707 GO:0009941 GO:0009987 GO:0009991 GO:0016020 GO:0016036 GO:0016740 GO:0016757 GO:0016758 GO:0019374 GO:0019752 GO:0019867 GO:0031090 GO:0031667 GO:0031668 GO:0031669 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032787 GO:0033554 GO:0035250 GO:0042170 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0071496 GO:0071704 GO:0098588 GO:0098805 GO:1901135 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00561 ko01100 map00561 map01100

Pfam Domains

Protein Families

Glyco_tran_28_C MGDG_synth

Protein Analysis

152

Amino Acids

16.81

Weight (kDa)

5.48

Isoelectric Point (pI)

40.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001366)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G11810 AT2G11810 AT2G11810 AT2G11810 AT5G20410
fragaria_vesca	FvH4_1g02220 FvH4_1g02220 FvH4_1g02220 FvH4_1g21680
malus_domestica	MD02G1020400.v1.1 MD15G1163200.v1.1
prunus_persica	Prupe.7G251400_v2.0.a1
pyrus_communis	pycom02g01790 pycom15g14680
rosa_chinensis	RchiOBHm_Chr2g0087331 RchiOBHm_Chr3g0481741 RchiOBHm_Chr4g0421821 RchiOBHm_Chr6g0246901
rosa_laevigata	RLG00000003836 RLG00000015857
rosa_multiflora	Rmu_co8187728.1_g000001 Rmu_co8222200.1_g000001 Rmu_sc0000540.1_g000032 Rmu_sc0003367.1_g000024 Rmu_sc0006064.1_g000001 Rmu_sc0007105.1_g000003 Rmu_sc0016592.1_g000001 Rmu_sc0037595.1_g000001
rosa_roxburghii	Rroxscaffold_1G00028410 Rroxscaffold_2G00111080 Rroxscaffold_2G00153680 Rroxscaffold_3G00242830 Rroxscaffold_4G00276430 Rroxscaffold_4G00300210 Rroxscaffold_7G00214190
rosa_rugosa	Rorug01G0474200
rosa_samantha	Rh1CG122800 Rh2AG027800 Rh2AG631400 Rh2BG027300 Rh2BG300600 Rh2CG028100 Rh2DG027900 Rh4BG234200 Rh5CG220000 Rh6BG190700 Rh6CG106700 Rh6CG108200 Rh6DG097200 Rh6DG098600 Rh7CG224800
rosa_wichuraiana	Rw1G013320 Rw2G002200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	438
AccI	GTMKAC	1 cut(s)	226
AccII	CGCG	1 cut(s)	144
AciI	CCGC	2 cut(s)	5, 144
AclWI	GGATC	1 cut(s)	107
AcoI	YGGCCR	1 cut(s)	2
AcyI	GRCGYC	1 cut(s)	435
AfiI	CCNNNNNNNGG	1 cut(s)	59
AjnI	CCWGG	4 cut(s)	16, 131, 191, 270
AluBI	AGCT	1 cut(s)	311
AluI	AGCT	1 cut(s)	311
Alw21I	GWGCWC	1 cut(s)	313
Alw26I	GTCTC	2 cut(s)	26, 69
AlwI	GGATC	1 cut(s)	107
AoxI	GGCC	1 cut(s)	2
AspLEI	GCGC	1 cut(s)	347
AspS9I	GGNCC	2 cut(s)	129, 405
AsuHPI	GGTGA	1 cut(s)	239
AvaII	GGWCC	2 cut(s)	129, 405
BanII	GRGCYC	1 cut(s)	313
BbsI	GAAGAC	1 cut(s)	236
Bbv12I	GWGCWC	1 cut(s)	313
BccI	CCATC	1 cut(s)	89
BciT130I	CCWGG	4 cut(s)	18, 133, 193, 272
BclI	TGATCA	1 cut(s)	154
BcoDI	GTCTC	2 cut(s)	26, 69
BfaI	CTAG	1 cut(s)	342
BisI	GCNGC	1 cut(s)	5
BlsI	GCNGC	1 cut(s)	6
Bme1390I	CCNGG	4 cut(s)	18, 133, 193, 272
Bme18I	GGWCC	2 cut(s)	129, 405
BmgT120I	GGNCC	2 cut(s)	129, 405
BmrFI	CCNGG	4 cut(s)	18, 133, 193, 272
BmrI	ACTGGG	1 cut(s)	48
BmsI	GCATC	1 cut(s)	121
BmuI	ACTGGG	1 cut(s)	48
BpiI	GAAGAC	1 cut(s)	236
BsaHI	GRCGYC	1 cut(s)	435
BsaI	GGTCTC	1 cut(s)	26
BsaWI	WCCGGW	1 cut(s)	350
BsaXI	ACNNNNNCTCC	2 cut(s)	6, 36
Bsc4I	CCNNNNNNNGG	1 cut(s)	59
Bse1I	ACTGG	2 cut(s)	34, 54
Bse3DI	GCAATG	1 cut(s)	215
BseBI	CCWGG	4 cut(s)	18, 133, 193, 272
BseGI	GGATG	4 cut(s)	100, 311, 325, 418
BseLI	CCNNNNNNNGG	1 cut(s)	59
BseMI	GCAATG	1 cut(s)	215
BseMII	CTCAG	1 cut(s)	316
BseNI	ACTGG	2 cut(s)	34, 54
Bsh1236I	CGCG	1 cut(s)	144
BshFI	GGCC	1 cut(s)	4
BsiHKAI	GWGCWC	1 cut(s)	313
BsiSI	CCGG	2 cut(s)	303, 351
BslI	CCNNNNNNNGG	1 cut(s)	59
BsmAI	GTCTC	2 cut(s)	26, 69
BsmI	GAATGC	1 cut(s)	335
BsnI	GGCC	1 cut(s)	4
Bso31I	GGTCTC	1 cut(s)	26
Bsp1286I	GDGCHC	1 cut(s)	313
Bsp143I	GATC	3 cut(s)	99, 154, 386
BspACI	CCGC	2 cut(s)	5, 144
BspANI	GGCC	1 cut(s)	4
BspCNI	CTCAG	1 cut(s)	317
BspFNI	CGCG	1 cut(s)	144
BspPI	GGATC	1 cut(s)	107
BspTNI	GGTCTC	1 cut(s)	26
BsrDI	GCAATG	1 cut(s)	215
BsrI	ACTGG	2 cut(s)	34, 54
BssMI	GATC	3 cut(s)	99, 154, 386
BssNI	GRCGYC	1 cut(s)	435
Bst2UI	CCWGG	4 cut(s)	18, 133, 193, 272
BstACI	GRCGYC	1 cut(s)	435
BstC8I	GCNNGC	1 cut(s)	395
BstDEI	CTNAG	1 cut(s)	325
BstF5I	GGATG	4 cut(s)	100, 311, 325, 418
BstFNI	CGCG	1 cut(s)	144
BstHHI	GCGC	1 cut(s)	347
BstKTI	GATC	3 cut(s)	102, 157, 389
BstMAI	GTCTC	2 cut(s)	26, 69
BstMBI	GATC	3 cut(s)	99, 154, 386
BstMWI	GCNNNNNNNGC	1 cut(s)	308
BstNI	CCWGG	4 cut(s)	18, 133, 193, 272
BstNSI	RCATGY	1 cut(s)	431
BstSCI	CCNGG	4 cut(s)	16, 131, 191, 270
BstUI	CGCG	1 cut(s)	144
BstV2I	GAAGAC	1 cut(s)	236
BstX2I	RGATCY	1 cut(s)	99
BstXI	CCANNNNNNTGG	1 cut(s)	278
BstYI	RGATCY	1 cut(s)	99
BsuRI	GGCC	1 cut(s)	4
BtsCI	GGATG	4 cut(s)	100, 311, 325, 418
BtsIMutI	CAGTG	1 cut(s)	27
Cac8I	GCNNGC	1 cut(s)	395
CfoI	GCGC	1 cut(s)	347
Cfr13I	GGNCC	2 cut(s)	129, 405
CsiI	ACCWGGT	1 cut(s)	16
CviAII	CATG	1 cut(s)	428
CviJI	RGCY	8 cut(s)	4, 126, 164, 256, 270, 302, 311, 357
CviKI_1	RGCY	8 cut(s)	4, 126, 164, 256, 270, 302, 311, 357
DdeI	CTNAG	1 cut(s)	325
DpnI	GATC	3 cut(s)	101, 156, 388
DpnII	GATC	3 cut(s)	99, 154, 386
EaeI	YGGCCR	1 cut(s)	2
Ecl136II	GAGCTC	1 cut(s)	311
Eco24I	GRGCYC	1 cut(s)	313
Eco31I	GGTCTC	1 cut(s)	26
Eco47I	GGWCC	2 cut(s)	129, 405
Eco53kI	GAGCTC	1 cut(s)	311
EcoICRI	GAGCTC	1 cut(s)	311
EcoRII	CCWGG	4 cut(s)	16, 131, 191, 270
EcoT38I	GRGCYC	1 cut(s)	313
FaeI	CATG	1 cut(s)	431
FaiI	YATR	4 cut(s)	117, 220, 429, 453
FatI	CATG	1 cut(s)	427
FbaI	TGATCA	1 cut(s)	154
FblI	GTMKAC	1 cut(s)	226
Fnu4HI	GCNGC	1 cut(s)	5
FokI	GGATG	4 cut(s)	107, 318, 332, 405
FriOI	GRGCYC	1 cut(s)	313
Fsp4HI	GCNGC	1 cut(s)	5
FspBI	CTAG	1 cut(s)	342
GlaI	GCGC	1 cut(s)	346
GluI	GCNGC	1 cut(s)	5
HaeIII	GGCC	1 cut(s)	4
HapII	CCGG	2 cut(s)	303, 351
HhaI	GCGC	1 cut(s)	347
Hin1I	GRCGYC	1 cut(s)	435
Hin1II	CATG	1 cut(s)	431
Hin6I	GCGC	1 cut(s)	345
HinP1I	GCGC	1 cut(s)	345
HinfI	GANTC	1 cut(s)	33
HpaII	CCGG	2 cut(s)	303, 351
HphI	GGTGA	1 cut(s)	239
Hpy166II	GTNNAC	1 cut(s)	227
Hpy188I	TCNGA	3 cut(s)	38, 159, 326
Hpy188III	TCNNGA	1 cut(s)	384
Hpy8I	GTNNAC	1 cut(s)	227
HpyCH4IV	ACGT	2 cut(s)	401, 435
HpyCH4V	TGCA	3 cut(s)	112, 333, 414
HpyF10VI	GCNNNNNNNGC	1 cut(s)	308
HpyF3I	CTNAG	1 cut(s)	325
HpySE526I	ACGT	2 cut(s)	401, 435
Hsp92I	GRCGYC	1 cut(s)	435
Hsp92II	CATG	1 cut(s)	431
HspAI	GCGC	1 cut(s)	345
Ksp22I	TGATCA	1 cut(s)	154
Kzo9I	GATC	3 cut(s)	99, 154, 386
LweI	GCATC	1 cut(s)	121
MabI	ACCWGGT	1 cut(s)	16
MaeI	CTAG	1 cut(s)	342
MaeII	ACGT	2 cut(s)	401, 435
MaeIII	GTNAC	1 cut(s)	105
MalI	GATC	3 cut(s)	101, 156, 388
MboI	GATC	3 cut(s)	99, 154, 386
MboII	GAAGA	1 cut(s)	236
MflI	RGATCY	1 cut(s)	99
MhlI	GDGCHC	1 cut(s)	313
MnlI	CCTC	6 cut(s)	60, 140, 153, 347, 418, 449
MseI	TTAA	2 cut(s)	337, 373
MspI	CCGG	2 cut(s)	303, 351
MspR9I	CCNGG	4 cut(s)	18, 133, 193, 272
Mva1269I	GAATGC	1 cut(s)	335
MvaI	CCWGG	4 cut(s)	18, 133, 193, 272
MvnI	CGCG	1 cut(s)	144
MwoI	GCNNNNNNNGC	1 cut(s)	308
NdeII	GATC	3 cut(s)	99, 154, 386
NlaIII	CATG	1 cut(s)	431
NmuCI	GTSAC	1 cut(s)	105
NspI	RCATGY	1 cut(s)	431
PctI	GAATGC	1 cut(s)	335
PfeI	GAWTC	1 cut(s)	33
PfoI	TCCNGGA	1 cut(s)	191
PkrI	GCNGC	1 cut(s)	6
Psp124BI	GAGCTC	1 cut(s)	313
Psp6I	CCWGG	4 cut(s)	16, 131, 191, 270
PspGI	CCWGG	4 cut(s)	16, 131, 191, 270
PspPI	GGNCC	2 cut(s)	129, 405
PsuI	RGATCY	1 cut(s)	99
SacI	GAGCTC	1 cut(s)	313
SaqAI	TTAA	2 cut(s)	337, 373
SatI	GCNGC	1 cut(s)	5
Sau3AI	GATC	3 cut(s)	99, 154, 386
Sau96I	GGNCC	2 cut(s)	129, 405
ScrFI	CCNGG	4 cut(s)	18, 133, 193, 272
SduI	GDGCHC	1 cut(s)	313
SetI	ASST	5 cut(s)	19, 64, 313, 404, 438
SexAI	ACCWGGT	1 cut(s)	16
SfaNI	GCATC	1 cut(s)	121
SinI	GGWCC	2 cut(s)	129, 405
SsiI	CCGC	2 cut(s)	5, 144
SspMI	CTAG	1 cut(s)	342
SstI	GAGCTC	1 cut(s)	313
StyD4I	CCNGG	4 cut(s)	16, 131, 191, 270
TaiI	ACGT	2 cut(s)	404, 438
TaqI	TCGA	1 cut(s)	364
TauI	GCSGC	1 cut(s)	7
TfiI	GAWTC	1 cut(s)	33
Tru1I	TTAA	2 cut(s)	337, 373
Tru9I	TTAA	2 cut(s)	337, 373
TscAI	CASTG	1 cut(s)	34
TseFI	GTSAC	1 cut(s)	105
Tsp45I	GTSAC	1 cut(s)	105
TspRI	CASTG	1 cut(s)	34
VpaK11BI	GGWCC	2 cut(s)	129, 405
XceI	RCATGY	1 cut(s)	431
XmiI	GTMKAC	1 cut(s)	226
XspI	CTAG	1 cut(s)	342
ZraI	GACGTC	1 cut(s)	436

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.