Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007105.1

Orthogroup ID

OG0001366

Physical Location & Seq

Genomic Coordinates Forward (+)

9861 .. 11205

Gene Structure 1345 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007105.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

atgtacgtccgcacctttgctaaagtgcggactgcaacgctgcagcagcgtttaggctgcaacggcgctgcaggacttgccggaaggaggtcaagggtcgatctcgaccttcttcttgttggtcgagtcgccggatatcagtttgcagtcactacccagaaccttaaagttgcaggtgaggtatttgtgaaggatgtgtggaaagaatacacaggttggcctttaaataatatggagaggtcttacaagttcatggtgaaacatgttcagctatggaaggttgcatttcacagtacttctcctagatggatccacagtgtctatcttgctgccattgcagcctactatgccaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006643 GO:0006664 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008194 GO:0008378 GO:0009267 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009605 GO:0009707 GO:0009941 GO:0009987 GO:0009991 GO:0016020 GO:0016036 GO:0016740 GO:0016757 GO:0016758 GO:0019374 GO:0019752 GO:0019867 GO:0031090 GO:0031667 GO:0031668 GO:0031669 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032787 GO:0033554 GO:0035250 GO:0042170 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0071496 GO:0071704 GO:0098588 GO:0098805 GO:1901135 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00561 ko01100 map00561 map01100

Pfam Domains

Protein Families

Glyco_tran_28_C MGDG_synth

Protein Analysis

118

Amino Acids

13.46

Weight (kDa)

10.17

Isoelectric Point (pI)

33.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001366)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G11810 AT2G11810 AT2G11810 AT2G11810 AT5G20410
fragaria_vesca	FvH4_1g02220 FvH4_1g02220 FvH4_1g02220 FvH4_1g21680
malus_domestica	MD02G1020400.v1.1 MD15G1163200.v1.1
prunus_persica	Prupe.7G251400_v2.0.a1
pyrus_communis	pycom02g01790 pycom15g14680
rosa_chinensis	RchiOBHm_Chr2g0087331 RchiOBHm_Chr3g0481741 RchiOBHm_Chr4g0421821 RchiOBHm_Chr6g0246901
rosa_laevigata	RLG00000003836 RLG00000015857
rosa_multiflora	Rmu_co8187728.1_g000001 Rmu_co8222200.1_g000001 Rmu_sc0000540.1_g000032 Rmu_sc0003367.1_g000024 Rmu_sc0006064.1_g000001 Rmu_sc0007105.1_g000003 Rmu_sc0016592.1_g000001 Rmu_sc0037595.1_g000001
rosa_roxburghii	Rroxscaffold_1G00028410 Rroxscaffold_2G00111080 Rroxscaffold_2G00153680 Rroxscaffold_3G00242830 Rroxscaffold_4G00276430 Rroxscaffold_4G00300210 Rroxscaffold_7G00214190
rosa_rugosa	Rorug01G0474200
rosa_samantha	Rh1CG122800 Rh2AG027800 Rh2AG631400 Rh2BG027300 Rh2BG300600 Rh2CG028100 Rh2DG027900 Rh4BG234200 Rh5CG220000 Rh6BG190700 Rh6CG106700 Rh6CG108200 Rh6DG097200 Rh6DG098600 Rh7CG224800
rosa_wichuraiana	Rw1G013320 Rw2G002200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	164
Acc36I	ACCTGC	1 cut(s)	164
AciI	CCGC	2 cut(s)	10, 28
AclWI	GGATC	2 cut(s)	304, 317
AfaI	GTAC	2 cut(s)	5, 295
AfiI	CCNNNNNNNGG	1 cut(s)	87
AflIII	ACRYGT	1 cut(s)	262
AluBI	AGCT	1 cut(s)	271
AluI	AGCT	1 cut(s)	271
AlwI	GGATC	2 cut(s)	304, 317
AoxI	GGCC	1 cut(s)	218
ApeKI	GCWGC	7 cut(s)	40, 43, 46, 57, 68, 329, 338
AspLEI	GCGC	1 cut(s)	68
AsuHPI	GGTGA	2 cut(s)	188, 268
BamHI	GGATCC	1 cut(s)	309
BbvI	GCAGC	7 cut(s)	27, 44, 55, 55, 58, 316, 350
BccI	CCATC	1 cut(s)	300
BceAI	ACGGC	1 cut(s)	79
BfaI	CTAG	1 cut(s)	303
BfmI	CTRYAG	2 cut(s)	41, 69
BfoI	RGCGCY	1 cut(s)	69
BfuAI	ACCTGC	1 cut(s)	164
BisI	GCNGC	7 cut(s)	41, 44, 47, 58, 69, 330, 339
BlsI	GCNGC	7 cut(s)	42, 45, 48, 59, 70, 331, 340
BmcAI	AGTACT	1 cut(s)	295
BmiI	GGNNCC	1 cut(s)	311
Bsc4I	CCNNNNNNNGG	1 cut(s)	87
Bse3DI	GCAATG	1 cut(s)	333
BseGI	GGATG	1 cut(s)	199
BseLI	CCNNNNNNNGG	1 cut(s)	87
BseMI	GCAATG	1 cut(s)	333
BseXI	GCAGC	7 cut(s)	27, 44, 55, 55, 58, 316, 350
BshFI	GGCC	1 cut(s)	220
BsiSI	CCGG	2 cut(s)	81, 132
BslI	CCNNNNNNNGG	1 cut(s)	87
BsnI	GGCC	1 cut(s)	220
Bsp143I	GATC	2 cut(s)	100, 309
BspACI	CCGC	2 cut(s)	10, 28
BspANI	GGCC	1 cut(s)	220
BspLI	GGNNCC	1 cut(s)	311
BspMAI	CTGCAG	2 cut(s)	45, 73
BspMI	ACCTGC	1 cut(s)	164
BspPI	GGATC	2 cut(s)	304, 317
BsrDI	GCAATG	1 cut(s)	333
BssMI	GATC	2 cut(s)	100, 309
Bst4CI	ACNGT	2 cut(s)	293, 317
BstAPI	GCANNNNNTGC	1 cut(s)	77
BstF5I	GGATG	1 cut(s)	199
BstH2I	RGCGCY	1 cut(s)	69
BstHHI	GCGC	1 cut(s)	68
BstKTI	GATC	2 cut(s)	103, 312
BstMBI	GATC	2 cut(s)	100, 309
BstMWI	GCNNNNNNNGC	6 cut(s)	46, 63, 77, 335, 338, 347
BstNSI	RCATGY	1 cut(s)	266
BstSFI	CTRYAG	2 cut(s)	41, 69
BstV1I	GCAGC	7 cut(s)	27, 44, 55, 55, 58, 316, 350
BstX2I	RGATCY	1 cut(s)	309
BstYI	RGATCY	1 cut(s)	309
BsuRI	GGCC	1 cut(s)	220
BtsCI	GGATG	1 cut(s)	199
BtsIMutI	CAGTG	1 cut(s)	322
BveI	ACCTGC	1 cut(s)	164
CfoI	GCGC	1 cut(s)	68
Csp6I	GTAC	2 cut(s)	4, 294
CviAII	CATG	2 cut(s)	253, 263
CviJI	RGCY	4 cut(s)	57, 220, 271, 341
CviKI_1	RGCY	4 cut(s)	57, 220, 271, 341
CviQI	GTAC	2 cut(s)	4, 294
DpnI	GATC	2 cut(s)	102, 311
DpnII	GATC	2 cut(s)	100, 309
DraI	TTTAAA	1 cut(s)	225
Eco32I	GATATC	1 cut(s)	137
EcoRV	GATATC	1 cut(s)	137
FaeI	CATG	2 cut(s)	256, 266
FaiI	YATR	5 cut(s)	233, 254, 264, 274, 348
FatI	CATG	2 cut(s)	252, 262
Fnu4HI	GCNGC	7 cut(s)	41, 44, 47, 58, 69, 330, 339
FokI	GGATG	1 cut(s)	206
Fsp4HI	GCNGC	7 cut(s)	41, 44, 47, 58, 69, 330, 339
FspBI	CTAG	1 cut(s)	303
GlaI	GCGC	1 cut(s)	67
GluI	GCNGC	7 cut(s)	41, 44, 47, 58, 69, 330, 339
HaeII	RGCGCY	1 cut(s)	69
HaeIII	GGCC	1 cut(s)	220
HapII	CCGG	2 cut(s)	81, 132
HhaI	GCGC	1 cut(s)	68
Hin1II	CATG	2 cut(s)	256, 266
Hin6I	GCGC	1 cut(s)	66
HinP1I	GCGC	1 cut(s)	66
HinfI	GANTC	1 cut(s)	126
HpaII	CCGG	2 cut(s)	81, 132
HphI	GGTGA	2 cut(s)	188, 268
Hpy188III	TCNNGA	1 cut(s)	104
HpyAV	CCTTC	4 cut(s)	78, 119, 184, 271
HpyCH4III	ACNGT	2 cut(s)	293, 317
HpyCH4IV	ACGT	1 cut(s)	6
HpyCH4V	TGCA	8 cut(s)	35, 43, 60, 71, 146, 173, 284, 338
HpyF10VI	GCNNNNNNNGC	6 cut(s)	46, 63, 77, 335, 338, 347
HpySE526I	ACGT	1 cut(s)	6
Hsp92II	CATG	2 cut(s)	256, 266
HspAI	GCGC	1 cut(s)	66
Kzo9I	GATC	2 cut(s)	100, 309
LpnPI	CCDG	6 cut(s)	57, 94, 145, 159, 170, 198
Lsp1109I	GCAGC	7 cut(s)	27, 44, 55, 55, 58, 316, 350
MaeI	CTAG	1 cut(s)	303
MaeII	ACGT	1 cut(s)	6
MaeIII	GTNAC	1 cut(s)	148
MalI	GATC	2 cut(s)	102, 311
MboI	GATC	2 cut(s)	100, 309
MboII	GAAGA	1 cut(s)	104
MflI	RGATCY	1 cut(s)	309
MlyI	GAGTC	1 cut(s)	135
MnlI	CCTC	3 cut(s)	81, 172, 231
MseI	TTAA	2 cut(s)	165, 224
MspI	CCGG	2 cut(s)	81, 132
MwoI	GCNNNNNNNGC	6 cut(s)	46, 63, 77, 335, 338, 347
NdeII	GATC	2 cut(s)	100, 309
NlaIII	CATG	2 cut(s)	256, 266
NlaIV	GGNNCC	1 cut(s)	311
NmuCI	GTSAC	1 cut(s)	148
NspI	RCATGY	1 cut(s)	266
PaqCI	CACCTGC	1 cut(s)	164
PciI	ACATGT	1 cut(s)	262
PkrI	GCNGC	7 cut(s)	42, 45, 48, 59, 70, 331, 340
PleI	GAGTC	1 cut(s)	134
PpsI	GAGTC	1 cut(s)	134
PscI	ACATGT	1 cut(s)	262
PspN4I	GGNNCC	1 cut(s)	311
PstI	CTGCAG	2 cut(s)	45, 73
PsuI	RGATCY	1 cut(s)	309
RsaI	GTAC	2 cut(s)	5, 295
RsaNI	GTAC	2 cut(s)	4, 294
SaqAI	TTAA	2 cut(s)	165, 224
SatI	GCNGC	7 cut(s)	41, 44, 47, 58, 69, 330, 339
Sau3AI	GATC	2 cut(s)	100, 309
ScaI	AGTACT	1 cut(s)	295
SchI	GAGTC	1 cut(s)	135
SfcI	CTRYAG	2 cut(s)	41, 69
SsiI	CCGC	2 cut(s)	10, 28
SspMI	CTAG	1 cut(s)	303
TaaI	ACNGT	2 cut(s)	293, 317
TaiI	ACGT	1 cut(s)	9
TaqI	TCGA	3 cut(s)	99, 105, 124
TatI	WGTACW	1 cut(s)	293
Tru1I	TTAA	2 cut(s)	165, 224
Tru9I	TTAA	2 cut(s)	165, 224
TscAI	CASTG	1 cut(s)	322
TseFI	GTSAC	1 cut(s)	148
TseI	GCWGC	7 cut(s)	40, 43, 46, 57, 68, 329, 338
Tsp45I	GTSAC	1 cut(s)	148
TspDTI	ATGAA	1 cut(s)	241
TspRI	CASTG	1 cut(s)	322
XceI	RCATGY	1 cut(s)	266
XspI	CTAG	1 cut(s)	303
ZrmI	AGTACT	1 cut(s)	295

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.