Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000540.1

Orthogroup ID

OG0001366

Physical Location & Seq

Genomic Coordinates Reverse (-)

148259 .. 149858

Gene Structure 1600 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000540.1_g000032.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

atgatgatgtccgttgcgtcgtcgccgagaaagtccataacggagaaagtgtttgagagggtcggaggggtttcttacctaagcagttatctcaagaacaacaactgtcataaccaccaccatcacagaaaagttgagagtgacgacgatgaggggactatggagcttgtgcagattggtgctgagaggaccaagaacgttttgattctaataagtgataccggcagtggacatagagcttccggggaggcgatcagcgatgcgtttcgtttggagacaagtaccagggaggtggaggctggtctaatggagtacaagccagacatcataattagtgttcatcctttgatgcaacatattcctctttgggttctcaaatggcaaggacttcagaagaaagtgatttttgtgacagtgattactgatctcaacacttgccatcctacatggtgttactacccatcggaggaggtagctaaaagggctctagtagatggccttgaagagtcccaaatacgtgtttttggcttgcccatcaggccctcttttgcccgagcggttatctctaaggtactttgctgctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006643 GO:0006664 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008194 GO:0008378 GO:0009267 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009605 GO:0009707 GO:0009941 GO:0009987 GO:0009991 GO:0016020 GO:0016036 GO:0016740 GO:0016757 GO:0016758 GO:0019374 GO:0019752 GO:0019867 GO:0031090 GO:0031667 GO:0031668 GO:0031669 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032787 GO:0033554 GO:0035250 GO:0042170 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0071496 GO:0071704 GO:0098588 GO:0098805 GO:1901135 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00561 ko01100 map00561 map01100

Pfam Domains

Protein Families

Glyco_tran_28_C MGDG_synth

Protein Analysis

194

Amino Acids

21.85

Weight (kDa)

6.75

Isoelectric Point (pI)

32.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001366)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G11810 AT2G11810 AT2G11810 AT2G11810 AT5G20410
fragaria_vesca	FvH4_1g02220 FvH4_1g02220 FvH4_1g02220 FvH4_1g21680
malus_domestica	MD02G1020400.v1.1 MD15G1163200.v1.1
prunus_persica	Prupe.7G251400_v2.0.a1
pyrus_communis	pycom02g01790 pycom15g14680
rosa_chinensis	RchiOBHm_Chr2g0087331 RchiOBHm_Chr3g0481741 RchiOBHm_Chr4g0421821 RchiOBHm_Chr6g0246901
rosa_laevigata	RLG00000003836 RLG00000015857
rosa_multiflora	Rmu_co8187728.1_g000001 Rmu_co8222200.1_g000001 Rmu_sc0000540.1_g000032 Rmu_sc0003367.1_g000024 Rmu_sc0006064.1_g000001 Rmu_sc0007105.1_g000003 Rmu_sc0016592.1_g000001 Rmu_sc0037595.1_g000001
rosa_roxburghii	Rroxscaffold_1G00028410 Rroxscaffold_2G00111080 Rroxscaffold_2G00153680 Rroxscaffold_3G00242830 Rroxscaffold_4G00276430 Rroxscaffold_4G00300210 Rroxscaffold_7G00214190
rosa_rugosa	Rorug01G0474200
rosa_samantha	Rh1CG122800 Rh2AG027800 Rh2AG631400 Rh2BG027300 Rh2BG300600 Rh2CG028100 Rh2DG027900 Rh4BG234200 Rh5CG220000 Rh6BG190700 Rh6CG106700 Rh6CG108200 Rh6DG097200 Rh6DG098600 Rh7CG224800
rosa_wichuraiana	Rw1G013320 Rw2G002200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	557
AciI	CCGC	1 cut(s)	557
AclI	AACGTT	1 cut(s)	198
AcuI	CTGAAG	1 cut(s)	374
AfaI	GTAC	3 cut(s)	283, 314, 573
AfiI	CCNNNNNNNGG	1 cut(s)	466
AflIII	ACRYGT	1 cut(s)	517
AgsI	TTSAA	1 cut(s)	503
AjnI	CCWGG	1 cut(s)	284
AluBI	AGCT	3 cut(s)	166, 239, 476
AluI	AGCT	3 cut(s)	166, 239, 476
Alw26I	GTCTC	1 cut(s)	269
Ama87I	CYCGRG	1 cut(s)	552
AoxI	GGCC	2 cut(s)	496, 539
ApeKI	GCWGC	1 cut(s)	579
AspS9I	GGNCC	2 cut(s)	189, 540
AsuC2I	CCSGG	1 cut(s)	244
AvaI	CYCGRG	1 cut(s)	552
AvaII	GGWCC	1 cut(s)	189
BanII	GRGCYC	1 cut(s)	487
BbvI	GCAGC	1 cut(s)	566
BccI	CCATC	5 cut(s)	129, 447, 469, 488, 542
BciT130I	CCWGG	1 cut(s)	286
BcnI	CCSGG	1 cut(s)	244
BcoDI	GTCTC	1 cut(s)	269
BfaI	CTAG	1 cut(s)	488
BglI	GCCNNNNNGGC	1 cut(s)	538
BisI	GCNGC	1 cut(s)	580
BlsI	GCNGC	1 cut(s)	581
Bme1390I	CCNGG	2 cut(s)	244, 286
Bme18I	GGWCC	1 cut(s)	189
BmeT110I	CYCGRG	1 cut(s)	552
BmgT120I	GGNCC	2 cut(s)	189, 540
BmrFI	CCNGG	2 cut(s)	244, 286
BmsI	GCATC	2 cut(s)	250, 339
Bpu10I	CCTNAGC	1 cut(s)	80
BpuEI	CTTGAG	1 cut(s)	77
BpuMI	CCSGG	1 cut(s)	244
BsaAI	YACGTR	1 cut(s)	518
BsaJI	CCNNGG	2 cut(s)	243, 285
BsaXI	ACNNNNNCTCC	2 cut(s)	35, 65
Bsc4I	CCNNNNNNNGG	1 cut(s)	466
Bse118I	RCCGGY	1 cut(s)	221
BseBI	CCWGG	1 cut(s)	286
BseDI	CCNNGG	2 cut(s)	243, 285
BseGI	GGATG	2 cut(s)	340, 439
BseLI	CCNNNNNNNGG	1 cut(s)	466
BseMII	CTCAG	1 cut(s)	174
BseRI	GAGGAG	1 cut(s)	482
BseXI	GCAGC	1 cut(s)	566
BsgI	GTGCAG	1 cut(s)	191
BshFI	GGCC	2 cut(s)	498, 541
BsiHKCI	CYCGRG	1 cut(s)	552
BsiSI	CCGG	2 cut(s)	222, 243
BslFI	GGGAC	2 cut(s)	169, 493
BslI	CCNNNNNNNGG	1 cut(s)	466
BsmAI	GTCTC	1 cut(s)	269
BsmFI	GGGAC	2 cut(s)	169, 493
BsnI	GGCC	2 cut(s)	498, 541
BsoBI	CYCGRG	1 cut(s)	552
Bsp1286I	GDGCHC	1 cut(s)	487
Bsp143I	GATC	2 cut(s)	252, 424
BspACI	CCGC	1 cut(s)	557
BspANI	GGCC	2 cut(s)	498, 541
BspCNI	CTCAG	1 cut(s)	175
BsrBI	CCGCTC	1 cut(s)	557
BsrFI	RCCGGY	1 cut(s)	221
BssAI	RCCGGY	1 cut(s)	221
BssECI	CCNNGG	2 cut(s)	243, 285
BssMI	GATC	2 cut(s)	252, 424
Bst2UI	CCWGG	1 cut(s)	286
Bst4CI	ACNGT	2 cut(s)	107, 415
Bst6I	CTCTTC	1 cut(s)	498
BstBAI	YACGTR	1 cut(s)	518
BstC8I	GCNNGC	1 cut(s)	530
BstDEI	CTNAG	3 cut(s)	80, 183, 567
BstF5I	GGATG	2 cut(s)	340, 439
BstKTI	GATC	2 cut(s)	255, 427
BstMAI	GTCTC	1 cut(s)	269
BstMBI	GATC	2 cut(s)	252, 424
BstMWI	GCNNNNNNNGC	2 cut(s)	482, 538
BstNI	CCWGG	1 cut(s)	286
BstSCI	CCNGG	2 cut(s)	242, 284
BstV1I	GCAGC	1 cut(s)	566
BstXI	CCANNNNNNTGG	1 cut(s)	292
BsuRI	GGCC	2 cut(s)	498, 541
BtgZI	GCGATG	1 cut(s)	273
BtsCI	GGATG	2 cut(s)	340, 439
BtsI	GCAGTG	1 cut(s)	232
BtsIMutI	CAGTG	2 cut(s)	232, 420
Cac8I	GCNNGC	1 cut(s)	530
Cfr10I	RCCGGY	1 cut(s)	221
Cfr13I	GGNCC	2 cut(s)	189, 540
CseI	GACGC	1 cut(s)	6
Csp6I	GTAC	3 cut(s)	282, 313, 572
CviAII	CATG	1 cut(s)	447
CviJI	RGCY	9 cut(s)	166, 239, 299, 319, 476, 485, 498, 528, 541
CviKI_1	RGCY	9 cut(s)	166, 239, 299, 319, 476, 485, 498, 528, 541
CviQI	GTAC	3 cut(s)	282, 313, 572
DdeI	CTNAG	3 cut(s)	80, 183, 567
DpnI	GATC	2 cut(s)	254, 426
DpnII	GATC	2 cut(s)	252, 424
Eam1104I	CTCTTC	1 cut(s)	498
EarI	CTCTTC	1 cut(s)	498
Eco24I	GRGCYC	1 cut(s)	487
Eco47I	GGWCC	1 cut(s)	189
Eco57I	CTGAAG	1 cut(s)	374
Eco88I	CYCGRG	1 cut(s)	552
EcoO109I	RGGNCCY	1 cut(s)	540
EcoRII	CCWGG	1 cut(s)	284
EcoT38I	GRGCYC	1 cut(s)	487
FaeI	CATG	1 cut(s)	450
FaiI	YATR	7 cut(s)	38, 111, 161, 234, 329, 357, 448
FaqI	GGGAC	2 cut(s)	169, 493
FatI	CATG	1 cut(s)	446
Fnu4HI	GCNGC	1 cut(s)	580
FokI	GGATG	2 cut(s)	327, 426
FriOI	GRGCYC	1 cut(s)	487
Fsp4HI	GCNGC	1 cut(s)	580
FspBI	CTAG	1 cut(s)	488
GluI	GCNGC	1 cut(s)	580
HaeIII	GGCC	2 cut(s)	498, 541
HapII	CCGG	2 cut(s)	222, 243
HgaI	GACGC	1 cut(s)	6
Hin1II	CATG	1 cut(s)	450
HinfI	GANTC	2 cut(s)	205, 506
HpaII	CCGG	2 cut(s)	222, 243
Hpy166II	GTNNAC	1 cut(s)	230
Hpy188I	TCNGA	3 cut(s)	65, 393, 466
Hpy188III	TCNNGA	1 cut(s)	94
Hpy8I	GTNNAC	1 cut(s)	230
Hpy99I	CGWCG	3 cut(s)	22, 25, 149
HpyCH4III	ACNGT	2 cut(s)	107, 415
HpyCH4IV	ACGT	2 cut(s)	198, 517
HpyCH4V	TGCA	2 cut(s)	172, 352
HpyF10VI	GCNNNNNNNGC	2 cut(s)	482, 538
HpyF3I	CTNAG	3 cut(s)	80, 183, 567
HpySE526I	ACGT	2 cut(s)	198, 517
Hsp92II	CATG	1 cut(s)	450
Kzo9I	GATC	2 cut(s)	252, 424
LmnI	GCTCC	1 cut(s)	163
LpnPI	CCDG	7 cut(s)	235, 256, 271, 285, 298, 333, 523
Lsp1109I	GCAGC	1 cut(s)	566
LweI	GCATC	2 cut(s)	250, 339
MaeI	CTAG	1 cut(s)	488
MaeII	ACGT	2 cut(s)	198, 517
MaeIII	GTNAC	3 cut(s)	140, 409, 452
MalI	GATC	2 cut(s)	254, 426
MbiI	CCGCTC	1 cut(s)	557
MboI	GATC	2 cut(s)	252, 424
MboII	GAAGA	2 cut(s)	406, 515
MhlI	GDGCHC	1 cut(s)	487
MluCI	AATT	1 cut(s)	330
MlyI	GAGTC	1 cut(s)	515
MmeI	TCCRAC	1 cut(s)	43
MspI	CCGG	2 cut(s)	222, 243
MspR9I	CCNGG	2 cut(s)	244, 286
MvaI	CCWGG	1 cut(s)	286
MwoI	GCNNNNNNNGC	2 cut(s)	482, 538
NciI	CCSGG	1 cut(s)	244
NdeII	GATC	2 cut(s)	252, 424
NlaIII	CATG	1 cut(s)	450
NmeAIII	GCCGAG	1 cut(s)	51
NmuCI	GTSAC	2 cut(s)	140, 409
PfeI	GAWTC	1 cut(s)	205
PkrI	GCNGC	1 cut(s)	581
PleI	GAGTC	1 cut(s)	514
PpsI	GAGTC	1 cut(s)	514
Ppu21I	YACGTR	1 cut(s)	518
Psp1406I	AACGTT	1 cut(s)	198
Psp6I	CCWGG	1 cut(s)	284
PspGI	CCWGG	1 cut(s)	284
PspPI	GGNCC	2 cut(s)	189, 540
RsaI	GTAC	3 cut(s)	283, 314, 573
RsaNI	GTAC	3 cut(s)	282, 313, 572
SatI	GCNGC	1 cut(s)	580
Sau3AI	GATC	2 cut(s)	252, 424
Sau96I	GGNCC	2 cut(s)	189, 540
SchI	GAGTC	1 cut(s)	515
ScrFI	CCNGG	2 cut(s)	244, 286
SduI	GDGCHC	1 cut(s)	487
SetI	ASST	9 cut(s)	81, 168, 201, 241, 294, 474, 478, 520, 573
SfaNI	GCATC	2 cut(s)	250, 339
SinI	GGWCC	1 cut(s)	189
SmlI	CTYRAG	1 cut(s)	92
SmoI	CTYRAG	1 cut(s)	92
Sse9I	AATT	1 cut(s)	330
SsiI	CCGC	1 cut(s)	557
SspMI	CTAG	1 cut(s)	488
StyD4I	CCNGG	2 cut(s)	242, 284
TaaI	ACNGT	2 cut(s)	107, 415
TaiI	ACGT	2 cut(s)	201, 520
TasI	AATT	1 cut(s)	330
TatI	WGTACW	1 cut(s)	312
TfiI	GAWTC	1 cut(s)	205
TscAI	CASTG	2 cut(s)	232, 420
TseFI	GTSAC	2 cut(s)	140, 409
TseI	GCWGC	1 cut(s)	579
Tsp45I	GTSAC	2 cut(s)	140, 409
TspDTI	ATGAA	1 cut(s)	329
TspGWI	ACGGA	1 cut(s)	56
TspRI	CASTG	2 cut(s)	232, 420
VpaK11BI	GGWCC	1 cut(s)	189
XspI	CTAG	1 cut(s)	488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.