Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001366

Physical Location & Seq

Genomic Coordinates Reverse (-)

64747657 .. 64761164

Gene Structure 13508 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00214190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGATCGGCTCGGTATCAATGCGCCGTCTTTGGGTCGACTACGCCCGGTGCTACGTGACCTGTTCGCTTTGCGCTGGATTGGTGGTAGCTCCCGCAAAGGGTGTCAATAGTAGATGTTGCGGCAACTCGAGCTTGTCTACCTTGGATCAAAGAAGAAGCTTGACCGACCCAAGTTGGGTGTTGGGATTGAGGATTGTGAATGTGTTTCCTCGTGATTCCCGTGAGTGGAATGACGATGTGTGGAAAGAATACACAGGTTGGCCTTTAAATAATATGGAGAGGTCTTACAAGTTCATGGTGAAACATGTTCAGCTATGGAAGGTTGCATTTCACATTACTTCTCCTAGATGGATCCACAGTGTCTATCTTGCTGCCATTGCAGCCTACCATGCCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006643 GO:0006664 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008194 GO:0008378 GO:0009267 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009605 GO:0009707 GO:0009941 GO:0009987 GO:0009991 GO:0016020 GO:0016036 GO:0016740 GO:0016757 GO:0016758 GO:0019374 GO:0019752 GO:0019867 GO:0031090 GO:0031667 GO:0031668 GO:0031669 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032787 GO:0033554 GO:0035250 GO:0042170 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0071496 GO:0071704 GO:0098588 GO:0098805 GO:1901135 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00561 ko01100 map00561 map01100

Pfam Domains

Protein Families

Glyco_tran_28_C MGDG_synth

Protein Analysis

132

Amino Acids

15.21

Weight (kDa)

9.54

Isoelectric Point (pI)

47.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MGDG_synth	PF06925	73 - 131	2.6e-10	Monogalactosyldiacylglycerol (MGDG) synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001366)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G11810 AT2G11810 AT2G11810 AT2G11810 AT5G20410
fragaria_vesca	FvH4_1g02220 FvH4_1g02220 FvH4_1g02220 FvH4_1g21680
malus_domestica	MD02G1020400.v1.1 MD15G1163200.v1.1
prunus_persica	Prupe.7G251400_v2.0.a1
pyrus_communis	pycom02g01790 pycom15g14680
rosa_chinensis	RchiOBHm_Chr2g0087331 RchiOBHm_Chr3g0481741 RchiOBHm_Chr4g0421821 RchiOBHm_Chr6g0246901
rosa_laevigata	RLG00000003836 RLG00000015857
rosa_multiflora	Rmu_co8187728.1_g000001 Rmu_co8222200.1_g000001 Rmu_sc0000540.1_g000032 Rmu_sc0003367.1_g000024 Rmu_sc0006064.1_g000001 Rmu_sc0007105.1_g000003 Rmu_sc0016592.1_g000001 Rmu_sc0037595.1_g000001
rosa_roxburghii	Rroxscaffold_1G00028410 Rroxscaffold_2G00111080 Rroxscaffold_2G00153680 Rroxscaffold_3G00242830 Rroxscaffold_4G00276430 Rroxscaffold_4G00300210 Rroxscaffold_7G00214190
rosa_rugosa	Rorug01G0474200
rosa_samantha	Rh1CG122800 Rh2AG027800 Rh2AG631400 Rh2BG027300 Rh2BG300600 Rh2CG028100 Rh2DG027900 Rh4BG234200 Rh5CG220000 Rh6BG190700 Rh6CG106700 Rh6CG108200 Rh6DG097200 Rh6DG098600 Rh7CG224800
rosa_wichuraiana	Rw1G013320 Rw2G002200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	36, 137
AciI	CCGC	2 cut(s)	93, 120
AclWI	GGATC	3 cut(s)	153, 346, 359
AfiI	CCNNNNNNNGG	4 cut(s)	31, 98, 175, 225
AflIII	ACRYGT	1 cut(s)	304
AluBI	AGCT	4 cut(s)	89, 132, 159, 313
AluI	AGCT	4 cut(s)	89, 132, 159, 313
AlwI	GGATC	3 cut(s)	153, 346, 359
Ama87I	CYCGRG	1 cut(s)	127
AoxI	GGCC	1 cut(s)	260
ApeKI	GCWGC	2 cut(s)	371, 380
AspLEI	GCGC	2 cut(s)	24, 74
AsuC2I	CCSGG	1 cut(s)	46
AsuHPI	GGTGA	1 cut(s)	310
AvaI	CYCGRG	1 cut(s)	127
BamHI	GGATCC	1 cut(s)	351
BauI	CACGAG	1 cut(s)	210
BbvI	GCAGC	2 cut(s)	358, 392
BccI	CCATC	1 cut(s)	342
BceAI	ACGGC	1 cut(s)	9
BcnI	CCSGG	1 cut(s)	46
BfaI	CTAG	1 cut(s)	345
BisI	GCNGC	3 cut(s)	121, 372, 381
BlsI	GCNGC	3 cut(s)	122, 373, 382
Bme1390I	CCNGG	1 cut(s)	46
BmeT110I	CYCGRG	1 cut(s)	127
BmiI	GGNNCC	1 cut(s)	353
BmrFI	CCNGG	1 cut(s)	46
BpuMI	CCSGG	1 cut(s)	46
BsaAI	YACGTR	1 cut(s)	55
BsaJI	CCNNGG	1 cut(s)	141
Bsc4I	CCNNNNNNNGG	4 cut(s)	31, 98, 175, 225
Bse3DI	GCAATG	1 cut(s)	375
BseDI	CCNNGG	1 cut(s)	141
BseLI	CCNNNNNNNGG	4 cut(s)	31, 98, 175, 225
BseMI	GCAATG	1 cut(s)	375
BseXI	GCAGC	2 cut(s)	358, 392
BshFI	GGCC	1 cut(s)	262
BsiHKCI	CYCGRG	1 cut(s)	127
BsiSI	CCGG	1 cut(s)	46
BslI	CCNNNNNNNGG	4 cut(s)	31, 98, 175, 225
BsnI	GGCC	1 cut(s)	262
BsoBI	CYCGRG	1 cut(s)	127
Bsp143I	GATC	3 cut(s)	3, 145, 351
BspACI	CCGC	2 cut(s)	93, 120
BspANI	GGCC	1 cut(s)	262
BspLI	GGNNCC	1 cut(s)	353
BspPI	GGATC	3 cut(s)	153, 346, 359
BsrDI	GCAATG	1 cut(s)	375
BssECI	CCNNGG	1 cut(s)	141
BssMI	GATC	3 cut(s)	3, 145, 351
BssSI	CACGAG	1 cut(s)	210
BssT1I	CCWWGG	1 cut(s)	141
Bst2BI	CACGAG	1 cut(s)	210
Bst4CI	ACNGT	1 cut(s)	359
BstBAI	YACGTR	1 cut(s)	55
BstHHI	GCGC	2 cut(s)	24, 74
BstKTI	GATC	3 cut(s)	6, 148, 354
BstMBI	GATC	3 cut(s)	3, 145, 351
BstMWI	GCNNNNNNNGC	4 cut(s)	129, 377, 380, 389
BstNSI	RCATGY	1 cut(s)	308
BstSCI	CCNGG	1 cut(s)	44
BstV1I	GCAGC	2 cut(s)	358, 392
BstX2I	RGATCY	1 cut(s)	351
BstYI	RGATCY	1 cut(s)	351
BsuRI	GGCC	1 cut(s)	262
BtsIMutI	CAGTG	1 cut(s)	364
CfoI	GCGC	2 cut(s)	24, 74
CviAII	CATG	3 cut(s)	295, 305, 389
CviJI	RGCY	7 cut(s)	9, 89, 132, 159, 262, 313, 383
CviKI_1	RGCY	7 cut(s)	9, 89, 132, 159, 262, 313, 383
DpnI	GATC	3 cut(s)	5, 147, 353
DpnII	GATC	3 cut(s)	3, 145, 351
DraI	TTTAAA	1 cut(s)	267
Eco130I	CCWWGG	1 cut(s)	141
Eco88I	CYCGRG	1 cut(s)	127
EcoT14I	CCWWGG	1 cut(s)	141
ErhI	CCWWGG	1 cut(s)	141
FaeI	CATG	3 cut(s)	298, 308, 392
FaiI	YATR	5 cut(s)	275, 296, 306, 316, 390
FatI	CATG	3 cut(s)	294, 304, 388
FauI	CCCGC	1 cut(s)	100
FblI	GTMKAC	2 cut(s)	36, 137
Fnu4HI	GCNGC	3 cut(s)	121, 372, 381
Fsp4HI	GCNGC	3 cut(s)	121, 372, 381
FspBI	CTAG	1 cut(s)	345
GlaI	GCGC	2 cut(s)	23, 73
GluI	GCNGC	3 cut(s)	121, 372, 381
HaeIII	GGCC	1 cut(s)	262
HapII	CCGG	1 cut(s)	46
HhaI	GCGC	2 cut(s)	24, 74
Hin1II	CATG	3 cut(s)	298, 308, 392
Hin6I	GCGC	2 cut(s)	22, 72
HinP1I	GCGC	2 cut(s)	22, 72
HincII	GTYRAC	1 cut(s)	37
HindII	GTYRAC	1 cut(s)	37
HindIII	AAGCTT	1 cut(s)	157
HinfI	GANTC	1 cut(s)	215
HpaII	CCGG	1 cut(s)	46
HphI	GGTGA	1 cut(s)	310
Hpy166II	GTNNAC	2 cut(s)	37, 138
Hpy188III	TCNNGA	1 cut(s)	212
Hpy8I	GTNNAC	2 cut(s)	37, 138
HpyAV	CCTTC	1 cut(s)	313
HpyCH4III	ACNGT	1 cut(s)	359
HpyCH4IV	ACGT	1 cut(s)	54
HpyCH4V	TGCA	2 cut(s)	326, 380
HpyF10VI	GCNNNNNNNGC	4 cut(s)	129, 377, 380, 389
HpySE526I	ACGT	1 cut(s)	54
Hsp92II	CATG	3 cut(s)	298, 308, 392
HspAI	GCGC	2 cut(s)	22, 72
Kzo9I	GATC	3 cut(s)	3, 145, 351
LmnI	GCTCC	1 cut(s)	94
LpnPI	CCDG	4 cut(s)	59, 60, 73, 240
Lsp1109I	GCAGC	2 cut(s)	358, 392
MaeI	CTAG	1 cut(s)	345
MaeII	ACGT	1 cut(s)	54
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	3 cut(s)	5, 147, 353
MboI	GATC	3 cut(s)	3, 145, 351
MboII	GAAGA	1 cut(s)	165
MflI	RGATCY	1 cut(s)	351
MnlI	CCTC	3 cut(s)	183, 219, 273
MseI	TTAA	1 cut(s)	266
MspI	CCGG	1 cut(s)	46
MspR9I	CCNGG	1 cut(s)	46
MwoI	GCNNNNNNNGC	4 cut(s)	129, 377, 380, 389
NciI	CCSGG	1 cut(s)	46
NdeII	GATC	3 cut(s)	3, 145, 351
NlaIII	CATG	3 cut(s)	298, 308, 392
NlaIV	GGNNCC	1 cut(s)	353
NmuCI	GTSAC	1 cut(s)	55
NspI	RCATGY	1 cut(s)	308
PaeR7I	CTCGAG	1 cut(s)	127
PciI	ACATGT	1 cut(s)	304
PcsI	WCGNNNNNNNCGW	1 cut(s)	217
PfeI	GAWTC	1 cut(s)	215
PkrI	GCNGC	3 cut(s)	122, 373, 382
Ppu21I	YACGTR	1 cut(s)	55
PscI	ACATGT	1 cut(s)	304
PspN4I	GGNNCC	1 cut(s)	353
PspXI	VCTCGAGB	1 cut(s)	127
PsuI	RGATCY	1 cut(s)	351
SalI	GTCGAC	1 cut(s)	35
SaqAI	TTAA	1 cut(s)	266
SatI	GCNGC	3 cut(s)	121, 372, 381
Sau3AI	GATC	3 cut(s)	3, 145, 351
ScrFI	CCNGG	1 cut(s)	46
Sfr274I	CTCGAG	1 cut(s)	127
SlaI	CTCGAG	1 cut(s)	127
SmlI	CTYRAG	1 cut(s)	127
SmoI	CTYRAG	1 cut(s)	127
SsiI	CCGC	2 cut(s)	93, 120
SspMI	CTAG	1 cut(s)	345
StyD4I	CCNGG	1 cut(s)	44
StyI	CCWWGG	1 cut(s)	141
TaaI	ACNGT	1 cut(s)	359
TaiI	ACGT	1 cut(s)	57
TaqI	TCGA	2 cut(s)	36, 128
TaqII	GACCGA	1 cut(s)	179
TauI	GCSGC	1 cut(s)	123
TfiI	GAWTC	1 cut(s)	215
Tru1I	TTAA	1 cut(s)	266
Tru9I	TTAA	1 cut(s)	266
TscAI	CASTG	1 cut(s)	364
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	2 cut(s)	371, 380
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	1 cut(s)	283
TspRI	CASTG	1 cut(s)	364
XceI	RCATGY	1 cut(s)	308
XhoI	CTCGAG	1 cut(s)	127
XmiI	GTMKAC	2 cut(s)	36, 137
XspI	CTAG	1 cut(s)	345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.