Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0001366

Physical Location & Seq

Genomic Coordinates Reverse (-)

12320122 .. 12327558

Gene Structure 7437 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG098600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGACAGGCCTTACAAGTTCATGGTGAAACATGTTCAGCTATGGAAGGTTGCATTTCACAGTACTTCTCCTAGATGGATCCACAGTGTCTATCTTGCTGCCATTGCAGCCTACTATGCCAAGGAGGTGGAGGCTGGTCTAATGGAGTACAAGCCAGACATCATAATTAGTGTTCATCCTTTGATGCAACATATTCCTCTTTTCTCAAATGGCAAGGACTTCAGAAGAAAGTTTCATCTGGGGGTCAATAGGTGTTACCGCCCATCGGAGGAGGTAGCTAAAAGAGCTCTAGTATATGGCCTTGAAGAGTCTCAAAAACGTGTTTTTGGCTTGCCCATCAGGCCCTCTTTGGCCCGAGCGGTTATCTCCAAGGATCAACTCATTATTTGTGGCCGCAATAAAAACCTTGTCTCCACGCTTGAATCTGATGAGTGGAACATCCCAGTCAAGCACATGTTGCATACGGCAAGGCTCACTCAGGGATTGCTTGAAGAGGAGAGTCGGGGTTGGTGCGTTGTAACAGGGCAGTGGGGAATTTCTTTACAGCTAGTCCTTTGTGCAATTCTTGGTTCCAGCCAGATTGCAGGATTAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006643 GO:0006664 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008194 GO:0008378 GO:0009267 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009605 GO:0009707 GO:0009941 GO:0009987 GO:0009991 GO:0016020 GO:0016036 GO:0016740 GO:0016757 GO:0016758 GO:0019374 GO:0019752 GO:0019867 GO:0031090 GO:0031667 GO:0031668 GO:0031669 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032787 GO:0033554 GO:0035250 GO:0042170 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0071496 GO:0071704 GO:0098588 GO:0098805 GO:1901135 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00561 ko01100 map00561 map01100

Pfam Domains

Protein Families

Glyco_tran_28_C MGDG_synth

Protein Analysis

198

Amino Acids

22.57

Weight (kDa)

9.32

Isoelectric Point (pI)

45.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MGDG_synth	PF06925	3 - 67	6.1e-18	Monogalactosyldiacylglycerol (MGDG) synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001366)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G11810 AT2G11810 AT2G11810 AT2G11810 AT5G20410
fragaria_vesca	FvH4_1g02220 FvH4_1g02220 FvH4_1g02220 FvH4_1g21680
malus_domestica	MD02G1020400.v1.1 MD15G1163200.v1.1
prunus_persica	Prupe.7G251400_v2.0.a1
pyrus_communis	pycom02g01790 pycom15g14680
rosa_chinensis	RchiOBHm_Chr2g0087331 RchiOBHm_Chr3g0481741 RchiOBHm_Chr4g0421821 RchiOBHm_Chr6g0246901
rosa_laevigata	RLG00000003836 RLG00000015857
rosa_multiflora	Rmu_co8187728.1_g000001 Rmu_co8222200.1_g000001 Rmu_sc0000540.1_g000032 Rmu_sc0003367.1_g000024 Rmu_sc0006064.1_g000001 Rmu_sc0007105.1_g000003 Rmu_sc0016592.1_g000001 Rmu_sc0037595.1_g000001
rosa_roxburghii	Rroxscaffold_1G00028410 Rroxscaffold_2G00111080 Rroxscaffold_2G00153680 Rroxscaffold_3G00242830 Rroxscaffold_4G00276430 Rroxscaffold_4G00300210 Rroxscaffold_7G00214190
rosa_rugosa	Rorug01G0474200
rosa_samantha	Rh1CG122800 Rh2AG027800 Rh2AG631400 Rh2BG027300 Rh2BG300600 Rh2CG028100 Rh2DG027900 Rh4BG234200 Rh5CG220000 Rh6BG190700 Rh6CG106700 Rh6CG108200 Rh6DG097200 Rh6DG098600 Rh7CG224800
rosa_wichuraiana	Rw1G013320 Rw2G002200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	359
AciI	CCGC	3 cut(s)	259, 359, 394
AclWI	GGATC	3 cut(s)	73, 86, 381
AcoI	YGGCCR	1 cut(s)	391
AcsI	RAATTY	1 cut(s)	534
AcuI	CTGAAG	1 cut(s)	205
AfaI	GTAC	2 cut(s)	64, 149
AfiI	CCNNNNNNNGG	2 cut(s)	265, 268
AflIII	ACRYGT	3 cut(s)	31, 319, 453
AgsI	TTSAA	3 cut(s)	305, 422, 491
AluBI	AGCT	4 cut(s)	40, 278, 287, 547
AluI	AGCT	4 cut(s)	40, 278, 287, 547
Alw21I	GWGCWC	1 cut(s)	289
Alw26I	GTCTC	2 cut(s)	315, 415
AlwI	GGATC	3 cut(s)	73, 86, 381
Ama87I	CYCGRG	1 cut(s)	354
AoxI	GGCC	5 cut(s)	8, 298, 341, 351, 391
ApeKI	GCWGC	2 cut(s)	98, 107
ApoI	RAATTY	1 cut(s)	534
AspS9I	GGNCC	2 cut(s)	342, 352
AsuHPI	GGTGA	1 cut(s)	37
AvaI	CYCGRG	1 cut(s)	354
BamHI	GGATCC	1 cut(s)	78
BanII	GRGCYC	1 cut(s)	289
Bbv12I	GWGCWC	1 cut(s)	289
BbvI	GCAGC	2 cut(s)	85, 119
BccI	CCATC	3 cut(s)	69, 271, 344
BceAI	ACGGC	1 cut(s)	480
BcoDI	GTCTC	2 cut(s)	315, 415
BfaI	CTAG	3 cut(s)	72, 290, 548
BglI	GCCNNNNNGGC	1 cut(s)	340
BisI	GCNGC	3 cut(s)	99, 108, 394
BlsI	GCNGC	3 cut(s)	100, 109, 395
BmcAI	AGTACT	1 cut(s)	64
BmeT110I	CYCGRG	1 cut(s)	354
BmgT120I	GGNCC	2 cut(s)	342, 352
BmiI	GGNNCC	2 cut(s)	80, 571
BmrI	ACTGGG	1 cut(s)	437
BmsI	GCATC	1 cut(s)	174
BmuI	ACTGGG	1 cut(s)	437
BsaJI	CCNNGG	2 cut(s)	120, 369
BsaXI	ACNNNNNCTCC	2 cut(s)	395, 425
Bsc4I	CCNNNNNNNGG	2 cut(s)	265, 268
Bse1I	ACTGG	1 cut(s)	443
Bse3DI	GCAATG	1 cut(s)	102
BseDI	CCNNGG	2 cut(s)	120, 369
BseGI	GGATG	2 cut(s)	175, 438
BseLI	CCNNNNNNNGG	2 cut(s)	265, 268
BseMI	GCAATG	1 cut(s)	102
BseMII	CTCAG	1 cut(s)	491
BseNI	ACTGG	1 cut(s)	443
BseRI	GAGGAG	2 cut(s)	284, 509
BseXI	GCAGC	2 cut(s)	85, 119
BshFI	GGCC	5 cut(s)	10, 300, 343, 353, 393
BsiHKAI	GWGCWC	1 cut(s)	289
BsiHKCI	CYCGRG	1 cut(s)	354
BslI	CCNNNNNNNGG	2 cut(s)	265, 268
BsmAI	GTCTC	2 cut(s)	315, 415
BsnI	GGCC	5 cut(s)	10, 300, 343, 353, 393
BsoBI	CYCGRG	1 cut(s)	354
Bsp1286I	GDGCHC	1 cut(s)	289
Bsp143I	GATC	2 cut(s)	78, 373
BspACI	CCGC	3 cut(s)	259, 359, 394
BspANI	GGCC	5 cut(s)	10, 300, 343, 353, 393
BspCNI	CTCAG	1 cut(s)	490
BspLI	GGNNCC	2 cut(s)	80, 571
BspPI	GGATC	3 cut(s)	73, 86, 381
BsrBI	CCGCTC	1 cut(s)	359
BsrDI	GCAATG	1 cut(s)	102
BsrI	ACTGG	1 cut(s)	443
BssECI	CCNNGG	2 cut(s)	120, 369
BssMI	GATC	2 cut(s)	78, 373
BssT1I	CCWWGG	2 cut(s)	120, 369
Bst4CI	ACNGT	2 cut(s)	62, 86
Bst6I	CTCTTC	2 cut(s)	300, 486
BstAPI	GCANNNNNTGC	1 cut(s)	457
BstC8I	GCNNGC	1 cut(s)	332
BstDEI	CTNAG	1 cut(s)	477
BstF5I	GGATG	2 cut(s)	175, 438
BstKTI	GATC	2 cut(s)	81, 376
BstMAI	GTCTC	2 cut(s)	315, 415
BstMBI	GATC	2 cut(s)	78, 373
BstMWI	GCNNNNNNNGC	6 cut(s)	104, 107, 116, 284, 340, 457
BstNSI	RCATGY	2 cut(s)	35, 457
BstV1I	GCAGC	2 cut(s)	85, 119
BstX2I	RGATCY	1 cut(s)	78
BstXI	CCANNNNNNTGG	1 cut(s)	127
BstYI	RGATCY	1 cut(s)	78
BsuRI	GGCC	5 cut(s)	10, 300, 343, 353, 393
BtsCI	GGATG	2 cut(s)	175, 438
BtsI	GCAGTG	1 cut(s)	533
BtsIMutI	CAGTG	2 cut(s)	91, 533
Cac8I	GCNNGC	1 cut(s)	332
Cfr13I	GGNCC	2 cut(s)	342, 352
Csp6I	GTAC	2 cut(s)	63, 148
CviAII	CATG	3 cut(s)	22, 32, 454
CviQI	GTAC	2 cut(s)	63, 148
DdeI	CTNAG	1 cut(s)	477
DpnI	GATC	2 cut(s)	80, 375
DpnII	GATC	2 cut(s)	78, 373
EaeI	YGGCCR	1 cut(s)	391
Eam1104I	CTCTTC	2 cut(s)	300, 486
EarI	CTCTTC	2 cut(s)	300, 486
Ecl136II	GAGCTC	1 cut(s)	287
Eco130I	CCWWGG	2 cut(s)	120, 369
Eco147I	AGGCCT	1 cut(s)	10
Eco24I	GRGCYC	1 cut(s)	289
Eco53kI	GAGCTC	1 cut(s)	287
Eco57I	CTGAAG	1 cut(s)	205
Eco88I	CYCGRG	1 cut(s)	354
EcoICRI	GAGCTC	1 cut(s)	287
EcoO109I	RGGNCCY	1 cut(s)	342
EcoT14I	CCWWGG	2 cut(s)	120, 369
EcoT38I	GRGCYC	1 cut(s)	289
ErhI	CCWWGG	2 cut(s)	120, 369
FaeI	CATG	3 cut(s)	25, 35, 457
FatI	CATG	3 cut(s)	21, 31, 453
Fnu4HI	GCNGC	3 cut(s)	99, 108, 394
FokI	GGATG	2 cut(s)	162, 425
FriOI	GRGCYC	1 cut(s)	289
Fsp4HI	GCNGC	3 cut(s)	99, 108, 394
FspBI	CTAG	3 cut(s)	72, 290, 548
GluI	GCNGC	3 cut(s)	99, 108, 394
HaeIII	GGCC	5 cut(s)	10, 300, 343, 353, 393
Hin1II	CATG	3 cut(s)	25, 35, 457
HinfI	GANTC	3 cut(s)	308, 422, 499
HphI	GGTGA	1 cut(s)	37
Hpy188I	TCNGA	3 cut(s)	224, 268, 427
HpyAV	CCTTC	1 cut(s)	40
HpyCH4III	ACNGT	2 cut(s)	62, 86
HpyCH4IV	ACGT	1 cut(s)	319
HpyCH4V	TGCA	6 cut(s)	53, 107, 187, 460, 560, 584
HpyF10VI	GCNNNNNNNGC	6 cut(s)	104, 107, 116, 284, 340, 457
HpyF3I	CTNAG	1 cut(s)	477
HpySE526I	ACGT	1 cut(s)	319
Hsp92II	CATG	3 cut(s)	25, 35, 457
Kzo9I	GATC	2 cut(s)	78, 373
Lsp1109I	GCAGC	2 cut(s)	85, 119
LweI	GCATC	1 cut(s)	174
MaeI	CTAG	3 cut(s)	72, 290, 548
MaeII	ACGT	1 cut(s)	319
MaeIII	GTNAC	2 cut(s)	254, 517
MalI	GATC	2 cut(s)	80, 375
MbiI	CCGCTC	1 cut(s)	359
MboI	GATC	2 cut(s)	78, 373
MboII	GAAGA	3 cut(s)	237, 317, 503
MflI	RGATCY	1 cut(s)	78
MhlI	GDGCHC	1 cut(s)	289
MluCI	AATT	3 cut(s)	165, 534, 561
MlyI	GAGTC	2 cut(s)	317, 508
MnlI	CCTC	7 cut(s)	118, 124, 207, 262, 265, 355, 487
MwoI	GCNNNNNNNGC	6 cut(s)	104, 107, 116, 284, 340, 457
NdeII	GATC	2 cut(s)	78, 373
NlaIII	CATG	3 cut(s)	25, 35, 457
NlaIV	GGNNCC	2 cut(s)	80, 571
NspI	RCATGY	2 cut(s)	35, 457
PceI	AGGCCT	1 cut(s)	10
PciI	ACATGT	2 cut(s)	31, 453
PfeI	GAWTC	1 cut(s)	422
PkrI	GCNGC	3 cut(s)	100, 109, 395
PleI	GAGTC	2 cut(s)	316, 507
PpsI	GAGTC	2 cut(s)	316, 507
PscI	ACATGT	2 cut(s)	31, 453
Psp124BI	GAGCTC	1 cut(s)	289
PspN4I	GGNNCC	2 cut(s)	80, 571
PspPI	GGNCC	2 cut(s)	342, 352
PsuI	RGATCY	1 cut(s)	78
RsaI	GTAC	2 cut(s)	64, 149
RsaNI	GTAC	2 cut(s)	63, 148
SacI	GAGCTC	1 cut(s)	289
SatI	GCNGC	3 cut(s)	99, 108, 394
Sau3AI	GATC	2 cut(s)	78, 373
Sau96I	GGNCC	2 cut(s)	342, 352
ScaI	AGTACT	1 cut(s)	64
SchI	GAGTC	2 cut(s)	317, 508
SduI	GDGCHC	1 cut(s)	289
SfaNI	GCATC	1 cut(s)	174
Sse9I	AATT	3 cut(s)	165, 534, 561
SseBI	AGGCCT	1 cut(s)	10
SsiI	CCGC	3 cut(s)	259, 359, 394
SspMI	CTAG	3 cut(s)	72, 290, 548
SstI	GAGCTC	1 cut(s)	289
StuI	AGGCCT	1 cut(s)	10
StyI	CCWWGG	2 cut(s)	120, 369
TaaI	ACNGT	2 cut(s)	62, 86
TaiI	ACGT	1 cut(s)	322
TasI	AATT	3 cut(s)	165, 534, 561
TatI	WGTACW	2 cut(s)	62, 147
TauI	GCSGC	1 cut(s)	396
TfiI	GAWTC	1 cut(s)	422
TscAI	CASTG	2 cut(s)	91, 533
TseI	GCWGC	2 cut(s)	98, 107
TspDTI	ATGAA	3 cut(s)	10, 164, 224
TspRI	CASTG	2 cut(s)	91, 533
XapI	RAATTY	1 cut(s)	534
XceI	RCATGY	2 cut(s)	35, 457
XspI	CTAG	3 cut(s)	72, 290, 548
ZrmI	AGTACT	1 cut(s)	64

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.