Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0001366

Physical Location & Seq

Genomic Coordinates Forward (+)

13644685 .. 13645634

Gene Structure 950 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g21680.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGACCCTGAGTTGCCTGCAGTATTGCTGATGGGCGGTGGTGAAGGAATGGGGCCTGTAAAGGAAACTGCAAGAGTTCTGGGAGAATCCCTCTTTGATAAAGAACTGGGAAAACCAATTGGACAGCTGATCGTTATATGCGGCCGCAATAAAAACCTTGTCGCCACGCTTGAATCTGATGAGTGGAACATCCCAGTCAAGATTAGAGGATTTGAGACACAGATGGAGAAATGGATGGGATCTTGTGACTGCATCATAACAAAGGCTGGTCCAGGCACAATTGCGGAGGCATTGATCAGAGGGCTTCCTATTATTCTCAATGACTACATTCCTGGACAAGAAAAGGGCAACGTGCCTTGTGTGGTAGACAATGGTGCTGGTGTCTTCACCAGAAGTCTCAAGGAAACAGCCAGGATTGTGGCAGAATGGTTCAGCACTAAGCCGGATGAACTCAAAAGAATGTCCGAGAATGCGCTTAAACTAGCACAACCGGAGGCTGTTTTCGACATTGTCAAAGACATTCACGACCTCGCCTGCCAACGTGGTCCTCTCGCAAACATCCCTTACATCCTGACATCCTCATTTACAAGTATAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006643 GO:0006664 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008194 GO:0008378 GO:0009267 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009605 GO:0009707 GO:0009941 GO:0009987 GO:0009991 GO:0016020 GO:0016036 GO:0016740 GO:0016757 GO:0016758 GO:0019374 GO:0019752 GO:0019867 GO:0031090 GO:0031667 GO:0031668 GO:0031669 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032787 GO:0033554 GO:0035250 GO:0042170 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0071496 GO:0071704 GO:0098588 GO:0098805 GO:1901135 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00561 ko01100 map00561 map01100

Pfam Domains

Protein Families

Glyco_tran_28_C MGDG_synth

Protein Analysis

200

Amino Acids

21.64

Weight (kDa)

5.05

Isoelectric Point (pI)

32.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_tran_28_C	PF04101	11 - 106	2.4e-09	Glycosyltransferase family 28 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001366)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G11810 AT2G11810 AT2G11810 AT2G11810 AT5G20410
fragaria_vesca	FvH4_1g02220 FvH4_1g02220 FvH4_1g02220 FvH4_1g21680
malus_domestica	MD02G1020400.v1.1 MD15G1163200.v1.1
prunus_persica	Prupe.7G251400_v2.0.a1
pyrus_communis	pycom02g01790 pycom15g14680
rosa_chinensis	RchiOBHm_Chr2g0087331 RchiOBHm_Chr3g0481741 RchiOBHm_Chr4g0421821 RchiOBHm_Chr6g0246901
rosa_laevigata	RLG00000003836 RLG00000015857
rosa_multiflora	Rmu_co8187728.1_g000001 Rmu_co8222200.1_g000001 Rmu_sc0000540.1_g000032 Rmu_sc0003367.1_g000024 Rmu_sc0006064.1_g000001 Rmu_sc0007105.1_g000003 Rmu_sc0016592.1_g000001 Rmu_sc0037595.1_g000001
rosa_roxburghii	Rroxscaffold_1G00028410 Rroxscaffold_2G00111080 Rroxscaffold_2G00153680 Rroxscaffold_3G00242830 Rroxscaffold_4G00276430 Rroxscaffold_4G00300210 Rroxscaffold_7G00214190
rosa_rugosa	Rorug01G0474200
rosa_samantha	Rh1CG122800 Rh2AG027800 Rh2AG631400 Rh2BG027300 Rh2BG300600 Rh2CG028100 Rh2DG027900 Rh4BG234200 Rh5CG220000 Rh6BG190700 Rh6CG106700 Rh6CG108200 Rh6DG097200 Rh6DG098600 Rh7CG224800
rosa_wichuraiana	Rw1G013320 Rw2G002200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	366
AciI	CCGC	4 cut(s)	36, 141, 145, 284
AclWI	GGATC	1 cut(s)	247
AcoI	YGGCCR	1 cut(s)	142
AgsI	TTSAA	1 cut(s)	173
AjnI	CCWGG	3 cut(s)	271, 331, 410
AluBI	AGCT	1 cut(s)	127
AluI	AGCT	1 cut(s)	127
Alw26I	GTCTC	2 cut(s)	209, 401
AlwI	GGATC	1 cut(s)	247
AoxI	GGCC	2 cut(s)	53, 142
AspLEI	GCGC	1 cut(s)	475
AspS9I	GGNCC	4 cut(s)	4, 53, 269, 545
AsuHPI	GGTGA	2 cut(s)	53, 379
AvaII	GGWCC	3 cut(s)	4, 269, 545
BbsI	GAAGAC	1 cut(s)	376
BccI	CCATC	3 cut(s)	25, 217, 229
BciT130I	CCWGG	3 cut(s)	273, 333, 412
BclI	TGATCA	1 cut(s)	294
BcoDI	GTCTC	2 cut(s)	209, 401
BfaI	CTAG	1 cut(s)	482
BfmI	CTRYAG	1 cut(s)	18
BisI	GCNGC	2 cut(s)	142, 145
BlsI	GCNGC	2 cut(s)	143, 146
Bme1390I	CCNGG	3 cut(s)	273, 333, 412
Bme18I	GGWCC	3 cut(s)	4, 269, 545
BmgT120I	GGNCC	4 cut(s)	4, 53, 269, 545
BmiI	GGNNCC	2 cut(s)	6, 54
BmrFI	CCNGG	3 cut(s)	273, 333, 412
BmrI	ACTGGG	2 cut(s)	116, 188
BmsI	GCATC	1 cut(s)	261
BmuI	ACTGGG	2 cut(s)	116, 188
BpiI	GAAGAC	1 cut(s)	376
BplI	GAGNNNNNCTC	2 cut(s)	75, 107
BpuEI	CTTGAG	1 cut(s)	383
BsaWI	WCCGGW	1 cut(s)	490
Bse1I	ACTGG	2 cut(s)	111, 194
BseBI	CCWGG	3 cut(s)	273, 333, 412
BseGI	GGATG	6 cut(s)	189, 240, 451, 558, 567, 575
BseNI	ACTGG	2 cut(s)	111, 194
BseX3I	CGGCCG	1 cut(s)	142
Bsh1285I	CGRYCG	1 cut(s)	145
BshFI	GGCC	2 cut(s)	55, 144
BsiEI	CGRYCG	1 cut(s)	145
BsiSI	CCGG	2 cut(s)	443, 491
BsmAI	GTCTC	2 cut(s)	209, 401
BsmI	GAATGC	1 cut(s)	475
BsnI	GGCC	2 cut(s)	55, 144
Bsp143I	GATC	3 cut(s)	129, 239, 294
BspACI	CCGC	4 cut(s)	36, 141, 145, 284
BspANI	GGCC	2 cut(s)	55, 144
BspLI	GGNNCC	2 cut(s)	6, 54
BspMAI	CTGCAG	1 cut(s)	22
BspPI	GGATC	1 cut(s)	247
BsrI	ACTGG	2 cut(s)	111, 194
BssMI	GATC	3 cut(s)	129, 239, 294
Bst2UI	CCWGG	3 cut(s)	273, 333, 412
BstC8I	GCNNGC	2 cut(s)	18, 535
BstDEI	CTNAG	2 cut(s)	9, 438
BstF5I	GGATG	6 cut(s)	189, 240, 451, 558, 567, 575
BstHHI	GCGC	1 cut(s)	475
BstKTI	GATC	3 cut(s)	132, 242, 297
BstMAI	GTCTC	2 cut(s)	209, 401
BstMBI	GATC	3 cut(s)	129, 239, 294
BstMCI	CGRYCG	1 cut(s)	145
BstNI	CCWGG	3 cut(s)	273, 333, 412
BstSCI	CCNGG	3 cut(s)	271, 331, 410
BstSFI	CTRYAG	1 cut(s)	18
BstV2I	GAAGAC	1 cut(s)	376
BstX2I	RGATCY	1 cut(s)	239
BstXI	CCANNNNNNTGG	1 cut(s)	418
BstYI	RGATCY	1 cut(s)	239
BstZI	CGGCCG	1 cut(s)	142
BsuRI	GGCC	2 cut(s)	55, 144
BtsCI	GGATG	6 cut(s)	189, 240, 451, 558, 567, 575
Cac8I	GCNNGC	2 cut(s)	18, 535
CciNI	GCGGCCGC	1 cut(s)	142
CfoI	GCGC	1 cut(s)	475
Cfr13I	GGNCC	4 cut(s)	4, 53, 269, 545
CviJI	RGCY	8 cut(s)	55, 127, 144, 266, 304, 410, 442, 497
CviKI_1	RGCY	8 cut(s)	55, 127, 144, 266, 304, 410, 442, 497
DdeI	CTNAG	2 cut(s)	9, 438
DpnI	GATC	3 cut(s)	131, 241, 296
DpnII	GATC	3 cut(s)	129, 239, 294
EaeI	YGGCCR	1 cut(s)	142
EagI	CGGCCG	1 cut(s)	142
EclXI	CGGCCG	1 cut(s)	142
Eco47I	GGWCC	3 cut(s)	4, 269, 545
Eco52I	CGGCCG	1 cut(s)	142
EcoO109I	RGGNCCY	1 cut(s)	53
EcoRII	CCWGG	3 cut(s)	271, 331, 410
FaiI	YATR	4 cut(s)	137, 139, 257, 593
FbaI	TGATCA	1 cut(s)	294
FblI	GTMKAC	1 cut(s)	366
Fnu4HI	GCNGC	2 cut(s)	142, 145
FokI	GGATG	6 cut(s)	176, 247, 458, 545, 554, 562
Fsp4HI	GCNGC	2 cut(s)	142, 145
FspBI	CTAG	1 cut(s)	482
GlaI	GCGC	1 cut(s)	474
GluI	GCNGC	2 cut(s)	142, 145
HaeIII	GGCC	2 cut(s)	55, 144
HapII	CCGG	2 cut(s)	443, 491
HhaI	GCGC	1 cut(s)	475
Hin6I	GCGC	1 cut(s)	473
HinP1I	GCGC	1 cut(s)	473
HinfI	GANTC	2 cut(s)	86, 173
HpaII	CCGG	2 cut(s)	443, 491
HphI	GGTGA	2 cut(s)	53, 379
Hpy166II	GTNNAC	1 cut(s)	367
Hpy188I	TCNGA	3 cut(s)	178, 299, 466
Hpy188III	TCNNGA	3 cut(s)	199, 524, 571
Hpy8I	GTNNAC	1 cut(s)	367
HpyAV	CCTTC	1 cut(s)	38
HpyCH4IV	ACGT	2 cut(s)	351, 541
HpyCH4V	TGCA	3 cut(s)	20, 71, 252
HpyF3I	CTNAG	2 cut(s)	9, 438
HpySE526I	ACGT	2 cut(s)	351, 541
HspAI	GCGC	1 cut(s)	473
Ksp22I	TGATCA	1 cut(s)	294
Kzo9I	GATC	3 cut(s)	129, 239, 294
LweI	GCATC	1 cut(s)	261
MaeI	CTAG	1 cut(s)	482
MaeII	ACGT	2 cut(s)	351, 541
MaeIII	GTNAC	1 cut(s)	245
MalI	GATC	3 cut(s)	131, 241, 296
MboI	GATC	3 cut(s)	129, 239, 294
MboII	GAAGA	1 cut(s)	376
MfeI	CAATTG	2 cut(s)	117, 279
MflI	RGATCY	1 cut(s)	239
MluCI	AATT	2 cut(s)	117, 279
MnlI	CCTC	8 cut(s)	101, 200, 280, 293, 487, 539, 558, 589
MseI	TTAA	1 cut(s)	477
MspA1I	CMGCKG	1 cut(s)	127
MspI	CCGG	2 cut(s)	443, 491
MspR9I	CCNGG	3 cut(s)	273, 333, 412
MunI	CAATTG	2 cut(s)	117, 279
Mva1269I	GAATGC	1 cut(s)	475
MvaI	CCWGG	3 cut(s)	273, 333, 412
NdeII	GATC	3 cut(s)	129, 239, 294
NlaIV	GGNNCC	2 cut(s)	6, 54
NmuCI	GTSAC	1 cut(s)	245
NotI	GCGGCCGC	1 cut(s)	142
PctI	GAATGC	1 cut(s)	475
PfeI	GAWTC	2 cut(s)	86, 173
PflFI	GACNNNGTC	1 cut(s)	509
PfoI	TCCNGGA	1 cut(s)	331
PkrI	GCNGC	2 cut(s)	143, 146
Psp6I	CCWGG	3 cut(s)	271, 331, 410
PspGI	CCWGG	3 cut(s)	271, 331, 410
PspN4I	GGNNCC	2 cut(s)	6, 54
PspPI	GGNCC	4 cut(s)	4, 53, 269, 545
PstI	CTGCAG	1 cut(s)	22
PsuI	RGATCY	1 cut(s)	239
PsyI	GACNNNGTC	1 cut(s)	509
PvuII	CAGCTG	1 cut(s)	127
SaqAI	TTAA	1 cut(s)	477
SatI	GCNGC	2 cut(s)	142, 145
Sau3AI	GATC	3 cut(s)	129, 239, 294
Sau96I	GGNCC	4 cut(s)	4, 53, 269, 545
ScrFI	CCNGG	3 cut(s)	273, 333, 412
SetI	ASST	5 cut(s)	129, 159, 354, 531, 544
SfaNI	GCATC	1 cut(s)	261
SfcI	CTRYAG	1 cut(s)	18
SinI	GGWCC	3 cut(s)	4, 269, 545
SmlI	CTYRAG	1 cut(s)	398
SmoI	CTYRAG	1 cut(s)	398
Sse9I	AATT	2 cut(s)	117, 279
SsiI	CCGC	4 cut(s)	36, 141, 145, 284
SspMI	CTAG	1 cut(s)	482
StyD4I	CCNGG	3 cut(s)	271, 331, 410
TaiI	ACGT	2 cut(s)	354, 544
TaqI	TCGA	1 cut(s)	504
TasI	AATT	2 cut(s)	117, 279
TauI	GCSGC	2 cut(s)	144, 147
TfiI	GAWTC	2 cut(s)	86, 173
Tru1I	TTAA	1 cut(s)	477
Tru9I	TTAA	1 cut(s)	477
TseFI	GTSAC	1 cut(s)	245
Tsp45I	GTSAC	1 cut(s)	245
TspDTI	ATGAA	1 cut(s)	462
Tth111I	GACNNNGTC	1 cut(s)	509
VpaK11BI	GGWCC	3 cut(s)	4, 269, 545
XmiI	GTMKAC	1 cut(s)	366
XspI	CTAG	1 cut(s)	482

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.