Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001366

Physical Location & Seq

Genomic Coordinates Forward (+)

1694682 .. 1698523

Gene Structure 3842 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG027900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGGAGTACAAGCCAGACATCATAATTAGTGTTCATCCTTTGATGCAACATATTCCTCTTTGGGTTCTCAAATGGCAAGGACTTCAGAAGAAAGTGATTTTTGTGACGGTGATCACTGATCTCAACACTTGCCATCCTACATGGTTTCATCCAGGGGTCAATAGGTGTTACTGCCCATCACAGGAGGTAGCTAAAAGGGCTCTAGTAGATGGCCTTGAAGAGTCCCAAATACGCGTTTTTGGCTTGCCCATCCGGCCCTCTTTTGCCCGAGCGGTTATCTCCAAGGATCAACTCAGAAAAGAACTCGAAATGGACCCTGAATTGCCTGCAGTATTGCTGATGGGAGGTGGTGAAGGAATGGGGCCTGTAAAGGAAACTGCGAGAGCTCTGGGAGAATCCCTCTTTGATAAAGGACTGGGAAAACCAATTGGGCAGCTGATCGTTATATGTGGCCGCAATAAAAACCTTGTCTCCACACTGGAATCTGATGAGTGGAATATCCCAGTCAAGGTTAGAGGATTTGAGACACAAATGGAGAAATGGATGGGATCTTGTGACTGCATCATAACAAAGGCTGGTCCAGGCACAATCGCGGAGGCATTGATCAGAGGGCTTCCTATTATTCTCAATGACTACATTCCTGGACAAGAAAAGGGCAATGTGCCTTATGTGGTAGACAATGGTGCTGGTGTCTTCACGAGAAGCCCCAAAGAAACAGCCAGGATTGTGGCAGAATGGTTCAGCACCAAGCCGGATGTGCTCAAAAGGATGTCTGAGAATGCACTTAAACTAGCGCAACCGGAGGCTGTTTTCGACATTGTTAAGGACATTCACGACCTCGCCTGCCAACGTGGTCCTCTTGCAAACATCCCTTACATGCTGACGTCCTCATTTACAAGTATAATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006643 GO:0006664 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008194 GO:0008378 GO:0009267 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009605 GO:0009707 GO:0009941 GO:0009987 GO:0009991 GO:0016020 GO:0016036 GO:0016740 GO:0016757 GO:0016758 GO:0019374 GO:0019752 GO:0019867 GO:0031090 GO:0031667 GO:0031668 GO:0031669 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032787 GO:0033554 GO:0035250 GO:0042170 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0071496 GO:0071704 GO:0098588 GO:0098805 GO:1901135 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00561 ko01100 map00561 map01100

Pfam Domains

Protein Families

Glyco_tran_28_C MGDG_synth

Protein Analysis

302

Amino Acids

33.5

Weight (kDa)

6.95

Isoelectric Point (pI)

37.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MGDG_synth	PF06925	1 - 84	2.3e-34	Monogalactosyldiacylglycerol (MGDG) synthase
Glyco_tran_28_C	PF04101	111 - 235	2.9e-09	Glycosyltransferase family 28 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001366)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G11810 AT2G11810 AT2G11810 AT2G11810 AT5G20410
fragaria_vesca	FvH4_1g02220 FvH4_1g02220 FvH4_1g02220 FvH4_1g21680
malus_domestica	MD02G1020400.v1.1 MD15G1163200.v1.1
prunus_persica	Prupe.7G251400_v2.0.a1
pyrus_communis	pycom02g01790 pycom15g14680
rosa_chinensis	RchiOBHm_Chr2g0087331 RchiOBHm_Chr3g0481741 RchiOBHm_Chr4g0421821 RchiOBHm_Chr6g0246901
rosa_laevigata	RLG00000003836 RLG00000015857
rosa_multiflora	Rmu_co8187728.1_g000001 Rmu_co8222200.1_g000001 Rmu_sc0000540.1_g000032 Rmu_sc0003367.1_g000024 Rmu_sc0006064.1_g000001 Rmu_sc0007105.1_g000003 Rmu_sc0016592.1_g000001 Rmu_sc0037595.1_g000001
rosa_roxburghii	Rroxscaffold_1G00028410 Rroxscaffold_2G00111080 Rroxscaffold_2G00153680 Rroxscaffold_3G00242830 Rroxscaffold_4G00276430 Rroxscaffold_4G00300210 Rroxscaffold_7G00214190
rosa_rugosa	Rorug01G0474200
rosa_samantha	Rh1CG122800 Rh2AG027800 Rh2AG631400 Rh2BG027300 Rh2BG300600 Rh2CG028100 Rh2DG027900 Rh4BG234200 Rh5CG220000 Rh6BG190700 Rh6CG106700 Rh6CG108200 Rh6DG097200 Rh6DG098600 Rh7CG224800
rosa_wichuraiana	Rw1G013320 Rw2G002200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	887
AccBSI	CCGCTC	1 cut(s)	272
AccI	GTMKAC	1 cut(s)	675
AccII	CGCG	2 cut(s)	234, 593
AciI	CCGC	3 cut(s)	272, 454, 593
AclWI	GGATC	2 cut(s)	294, 556
AcoI	YGGCCR	1 cut(s)	451
AcuI	CTGAAG	1 cut(s)	68
AcyI	GRCGYC	1 cut(s)	884
AfaI	GTAC	1 cut(s)	8
AfiI	CCNNNNNNNGG	2 cut(s)	181, 508
AflIII	ACRYGT	1 cut(s)	232
AgsI	TTSAA	1 cut(s)	218
AjnI	CCWGG	4 cut(s)	151, 580, 640, 719
AluBI	AGCT	3 cut(s)	191, 386, 436
AluI	AGCT	3 cut(s)	191, 386, 436
Alw21I	GWGCWC	2 cut(s)	388, 762
Alw26I	GTCTC	2 cut(s)	475, 518
AlwI	GGATC	2 cut(s)	294, 556
Ama87I	CYCGRG	1 cut(s)	267
AoxI	GGCC	4 cut(s)	211, 254, 362, 451
ApeKI	GCWGC	1 cut(s)	433
AspLEI	GCGC	1 cut(s)	796
AspS9I	GGNCC	5 cut(s)	255, 313, 362, 578, 854
AsuHPI	GGTGA	2 cut(s)	121, 362
AvaI	CYCGRG	1 cut(s)	267
AvaII	GGWCC	3 cut(s)	313, 578, 854
BanII	GRGCYC	2 cut(s)	202, 388
BauI	CACGAG	1 cut(s)	697
BbsI	GAAGAC	1 cut(s)	685
Bbv12I	GWGCWC	2 cut(s)	388, 762
BbvI	GCAGC	1 cut(s)	445
BccI	CCATC	6 cut(s)	141, 184, 203, 257, 334, 538
BciT130I	CCWGG	4 cut(s)	153, 582, 642, 721
BclI	TGATCA	2 cut(s)	111, 603
BcoDI	GTCTC	2 cut(s)	475, 518
BfaI	CTAG	2 cut(s)	203, 791
BfmI	CTRYAG	1 cut(s)	327
BglI	GCCNNNNNGGC	1 cut(s)	253
BisI	GCNGC	2 cut(s)	434, 454
BlsI	GCNGC	2 cut(s)	435, 455
Bme1390I	CCNGG	4 cut(s)	153, 582, 642, 721
Bme18I	GGWCC	3 cut(s)	313, 578, 854
BmeT110I	CYCGRG	1 cut(s)	267
BmgT120I	GGNCC	5 cut(s)	255, 313, 362, 578, 854
BmiI	GGNNCC	2 cut(s)	315, 363
BmrFI	CCNGG	4 cut(s)	153, 582, 642, 721
BmrI	ACTGGG	2 cut(s)	425, 497
BmsI	GCATC	2 cut(s)	33, 570
BmuI	ACTGGG	2 cut(s)	425, 497
BpiI	GAAGAC	1 cut(s)	685
BplI	GAGNNNNNCTC	2 cut(s)	384, 416
BsaHI	GRCGYC	1 cut(s)	884
BsaJI	CCNNGG	2 cut(s)	152, 282
BsaWI	WCCGGW	1 cut(s)	799
BsaXI	ACNNNNNCTCC	2 cut(s)	455, 485
Bsc4I	CCNNNNNNNGG	2 cut(s)	181, 508
Bse1I	ACTGG	3 cut(s)	420, 483, 503
Bse3DI	GCAATG	1 cut(s)	664
BseBI	CCWGG	4 cut(s)	153, 582, 642, 721
BseDI	CCNNGG	2 cut(s)	152, 282
BseGI	GGATG	8 cut(s)	34, 133, 148, 249, 549, 760, 774, 867
BseLI	CCNNNNNNNGG	2 cut(s)	181, 508
BseMI	GCAATG	1 cut(s)	664
BseMII	CTCAG	2 cut(s)	307, 765
BseNI	ACTGG	3 cut(s)	420, 483, 503
BseXI	GCAGC	1 cut(s)	445
Bsh1236I	CGCG	2 cut(s)	234, 593
BshFI	GGCC	4 cut(s)	213, 256, 364, 453
BsiHKAI	GWGCWC	2 cut(s)	388, 762
BsiHKCI	CYCGRG	1 cut(s)	267
BsiSI	CCGG	3 cut(s)	253, 752, 800
BslFI	GGGAC	1 cut(s)	208
BslI	CCNNNNNNNGG	2 cut(s)	181, 508
BsmAI	GTCTC	2 cut(s)	475, 518
BsmFI	GGGAC	1 cut(s)	208
BsmI	GAATGC	1 cut(s)	784
BsnI	GGCC	4 cut(s)	213, 256, 364, 453
BsoBI	CYCGRG	1 cut(s)	267
Bsp1286I	GDGCHC	3 cut(s)	202, 388, 762
Bsp143I	GATC	6 cut(s)	111, 118, 286, 438, 548, 603
BspACI	CCGC	3 cut(s)	272, 454, 593
BspANI	GGCC	4 cut(s)	213, 256, 364, 453
BspCNI	CTCAG	2 cut(s)	306, 766
BspFNI	CGCG	2 cut(s)	234, 593
BspLI	GGNNCC	2 cut(s)	315, 363
BspMAI	CTGCAG	1 cut(s)	331
BspPI	GGATC	2 cut(s)	294, 556
BsrBI	CCGCTC	1 cut(s)	272
BsrDI	GCAATG	1 cut(s)	664
BsrI	ACTGG	3 cut(s)	420, 483, 503
BssECI	CCNNGG	2 cut(s)	152, 282
BssMI	GATC	6 cut(s)	111, 118, 286, 438, 548, 603
BssNI	GRCGYC	1 cut(s)	884
BssSI	CACGAG	1 cut(s)	697
BssT1I	CCWWGG	1 cut(s)	282
Bst2BI	CACGAG	1 cut(s)	697
Bst2UI	CCWGG	4 cut(s)	153, 582, 642, 721
Bst4CI	ACNGT	1 cut(s)	109
Bst6I	CTCTTC	1 cut(s)	213
BstACI	GRCGYC	1 cut(s)	884
BstC8I	GCNNGC	3 cut(s)	245, 327, 844
BstDEI	CTNAG	2 cut(s)	293, 774
BstF5I	GGATG	8 cut(s)	34, 133, 148, 249, 549, 760, 774, 867
BstFNI	CGCG	2 cut(s)	234, 593
BstHHI	GCGC	1 cut(s)	796
BstKTI	GATC	6 cut(s)	114, 121, 289, 441, 551, 606
BstMAI	GTCTC	2 cut(s)	475, 518
BstMBI	GATC	6 cut(s)	111, 118, 286, 438, 548, 603
BstMWI	GCNNNNNNNGC	4 cut(s)	197, 240, 253, 757
BstNI	CCWGG	4 cut(s)	153, 582, 642, 721
BstNSI	RCATGY	1 cut(s)	880
BstSCI	CCNGG	4 cut(s)	151, 580, 640, 719
BstSFI	CTRYAG	1 cut(s)	327
BstUI	CGCG	2 cut(s)	234, 593
BstV1I	GCAGC	1 cut(s)	445
BstV2I	GAAGAC	1 cut(s)	685
BstX2I	RGATCY	1 cut(s)	548
BstXI	CCANNNNNNTGG	1 cut(s)	727
BstYI	RGATCY	1 cut(s)	548
BsuRI	GGCC	4 cut(s)	213, 256, 364, 453
BtsCI	GGATG	8 cut(s)	34, 133, 148, 249, 549, 760, 774, 867
BtsIMutI	CAGTG	2 cut(s)	114, 476
Cac8I	GCNNGC	3 cut(s)	245, 327, 844
CfoI	GCGC	1 cut(s)	796
Cfr13I	GGNCC	5 cut(s)	255, 313, 362, 578, 854
Csp6I	GTAC	1 cut(s)	7
CviAII	CATG	2 cut(s)	141, 877
CviQI	GTAC	1 cut(s)	7
DdeI	CTNAG	2 cut(s)	293, 774
DpnI	GATC	6 cut(s)	113, 120, 288, 440, 550, 605
DpnII	GATC	6 cut(s)	111, 118, 286, 438, 548, 603
EaeI	YGGCCR	1 cut(s)	451
Eam1104I	CTCTTC	1 cut(s)	213
EarI	CTCTTC	1 cut(s)	213
Ecl136II	GAGCTC	1 cut(s)	386
Eco130I	CCWWGG	1 cut(s)	282
Eco24I	GRGCYC	2 cut(s)	202, 388
Eco47I	GGWCC	3 cut(s)	313, 578, 854
Eco53kI	GAGCTC	1 cut(s)	386
Eco57I	CTGAAG	1 cut(s)	68
Eco88I	CYCGRG	1 cut(s)	267
EcoICRI	GAGCTC	1 cut(s)	386
EcoO109I	RGGNCCY	1 cut(s)	362
EcoRII	CCWGG	4 cut(s)	151, 580, 640, 719
EcoT14I	CCWWGG	1 cut(s)	282
EcoT38I	GRGCYC	2 cut(s)	202, 388
ErhI	CCWWGG	1 cut(s)	282
FaeI	CATG	2 cut(s)	144, 880
FaiI	YATR	9 cut(s)	23, 51, 142, 446, 448, 566, 669, 878, 902
FaqI	GGGAC	1 cut(s)	208
FatI	CATG	2 cut(s)	140, 876
FbaI	TGATCA	2 cut(s)	111, 603
FblI	GTMKAC	1 cut(s)	675
Fnu4HI	GCNGC	2 cut(s)	434, 454
FokI	GGATG	8 cut(s)	21, 120, 135, 236, 556, 767, 781, 854
FriOI	GRGCYC	2 cut(s)	202, 388
Fsp4HI	GCNGC	2 cut(s)	434, 454
FspBI	CTAG	2 cut(s)	203, 791
GlaI	GCGC	1 cut(s)	795
GluI	GCNGC	2 cut(s)	434, 454
HaeIII	GGCC	4 cut(s)	213, 256, 364, 453
HapII	CCGG	3 cut(s)	253, 752, 800
HhaI	GCGC	1 cut(s)	796
Hin1I	GRCGYC	1 cut(s)	884
Hin1II	CATG	2 cut(s)	144, 880
Hin6I	GCGC	1 cut(s)	794
HinP1I	GCGC	1 cut(s)	794
HinfI	GANTC	3 cut(s)	221, 395, 482
HpaII	CCGG	3 cut(s)	253, 752, 800
HphI	GGTGA	2 cut(s)	121, 362
Hpy166II	GTNNAC	1 cut(s)	676
Hpy188I	TCNGA	5 cut(s)	87, 296, 487, 608, 775
Hpy188III	TCNNGA	2 cut(s)	697, 833
Hpy8I	GTNNAC	1 cut(s)	676
HpyAV	CCTTC	1 cut(s)	347
HpyCH4III	ACNGT	1 cut(s)	109
HpyCH4IV	ACGT	2 cut(s)	850, 884
HpyCH4V	TGCA	5 cut(s)	46, 329, 561, 782, 863
HpyF10VI	GCNNNNNNNGC	4 cut(s)	197, 240, 253, 757
HpyF3I	CTNAG	2 cut(s)	293, 774
HpySE526I	ACGT	2 cut(s)	850, 884
Hsp92I	GRCGYC	1 cut(s)	884
Hsp92II	CATG	2 cut(s)	144, 880
HspAI	GCGC	1 cut(s)	794
Ksp22I	TGATCA	2 cut(s)	111, 603
Kzo9I	GATC	6 cut(s)	111, 118, 286, 438, 548, 603
Lsp1109I	GCAGC	1 cut(s)	445
LweI	GCATC	2 cut(s)	33, 570
MaeI	CTAG	2 cut(s)	203, 791
MaeII	ACGT	2 cut(s)	850, 884
MaeIII	GTNAC	3 cut(s)	103, 167, 554
MalI	GATC	6 cut(s)	113, 120, 288, 440, 550, 605
MbiI	CCGCTC	1 cut(s)	272
MboI	GATC	6 cut(s)	111, 118, 286, 438, 548, 603
MboII	GAAGA	3 cut(s)	100, 230, 685
MfeI	CAATTG	1 cut(s)	426
MflI	RGATCY	1 cut(s)	548
MhlI	GDGCHC	3 cut(s)	202, 388, 762
MluCI	AATT	3 cut(s)	24, 320, 426
MluI	ACGCGT	1 cut(s)	232
MlyI	GAGTC	1 cut(s)	230
MseI	TTAA	2 cut(s)	786, 822
MspA1I	CMGCKG	1 cut(s)	436
MspI	CCGG	3 cut(s)	253, 752, 800
MspR9I	CCNGG	4 cut(s)	153, 582, 642, 721
MunI	CAATTG	1 cut(s)	426
Mva1269I	GAATGC	1 cut(s)	784
MvaI	CCWGG	4 cut(s)	153, 582, 642, 721
MvnI	CGCG	2 cut(s)	234, 593
MwoI	GCNNNNNNNGC	4 cut(s)	197, 240, 253, 757
NdeII	GATC	6 cut(s)	111, 118, 286, 438, 548, 603
NlaIII	CATG	2 cut(s)	144, 880
NlaIV	GGNNCC	2 cut(s)	315, 363
NmuCI	GTSAC	2 cut(s)	103, 554
NspI	RCATGY	1 cut(s)	880
PctI	GAATGC	1 cut(s)	784
PfeI	GAWTC	2 cut(s)	395, 482
PfoI	TCCNGGA	1 cut(s)	640
PkrI	GCNGC	2 cut(s)	435, 455
PleI	GAGTC	1 cut(s)	229
PpsI	GAGTC	1 cut(s)	229
Psp124BI	GAGCTC	1 cut(s)	388
Psp6I	CCWGG	4 cut(s)	151, 580, 640, 719
PspGI	CCWGG	4 cut(s)	151, 580, 640, 719
PspN4I	GGNNCC	2 cut(s)	315, 363
PspPI	GGNCC	5 cut(s)	255, 313, 362, 578, 854
PstI	CTGCAG	1 cut(s)	331
PsuI	RGATCY	1 cut(s)	548
PvuII	CAGCTG	1 cut(s)	436
RsaI	GTAC	1 cut(s)	8
RsaNI	GTAC	1 cut(s)	7
SacI	GAGCTC	1 cut(s)	388
SaqAI	TTAA	2 cut(s)	786, 822
SatI	GCNGC	2 cut(s)	434, 454
Sau3AI	GATC	6 cut(s)	111, 118, 286, 438, 548, 603
Sau96I	GGNCC	5 cut(s)	255, 313, 362, 578, 854
SchI	GAGTC	1 cut(s)	230
ScrFI	CCNGG	4 cut(s)	153, 582, 642, 721
SduI	GDGCHC	3 cut(s)	202, 388, 762
SfaNI	GCATC	2 cut(s)	33, 570
SfcI	CTRYAG	1 cut(s)	327
SinI	GGWCC	3 cut(s)	313, 578, 854
Sse9I	AATT	3 cut(s)	24, 320, 426
SsiI	CCGC	3 cut(s)	272, 454, 593
SspMI	CTAG	2 cut(s)	203, 791
SstI	GAGCTC	1 cut(s)	388
StyD4I	CCNGG	4 cut(s)	151, 580, 640, 719
StyI	CCWWGG	1 cut(s)	282
TaaI	ACNGT	1 cut(s)	109
TaiI	ACGT	2 cut(s)	853, 887
TaqI	TCGA	2 cut(s)	306, 813
TasI	AATT	3 cut(s)	24, 320, 426
TatI	WGTACW	1 cut(s)	6
TauI	GCSGC	1 cut(s)	456
TfiI	GAWTC	2 cut(s)	395, 482
Tru1I	TTAA	2 cut(s)	786, 822
Tru9I	TTAA	2 cut(s)	786, 822
TscAI	CASTG	2 cut(s)	121, 483
TseFI	GTSAC	2 cut(s)	103, 554
TseI	GCWGC	1 cut(s)	433
Tsp45I	GTSAC	2 cut(s)	103, 554
TspDTI	ATGAA	2 cut(s)	23, 137
TspRI	CASTG	2 cut(s)	121, 483
VpaK11BI	GGWCC	3 cut(s)	313, 578, 854
XceI	RCATGY	1 cut(s)	880
XmiI	GTMKAC	1 cut(s)	675
XspI	CTAG	2 cut(s)	203, 791
ZraI	GACGTC	1 cut(s)	885

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.