Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0001366

Physical Location & Seq

Genomic Coordinates Reverse (-)

29738406 .. 29740760

Gene Structure 2355 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G013320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGAGTACAAGCCAGACATCATAATTAGTGTTCATCCTTTGATGCAACATATTCCTCTTTTCTCAAATGGCAAGGACTTCAGAAGAAAGTTTCATCCGGGGGTCAATAGGCGTTACTGCCCATCGGAAGAGGTAGCTAAAAGAGCTCTAGTATATGGCCTTGAAGAGTCCCAAATACGTGTTTTTGGCTTGTCCATCAGGCCCTCTTTTTCCCTAGCAGTTATCTCCAAGGATCAACTCATTATTTGTGGCCGCAATAAAAACCTTGTCTCCACGCTTGAATCTGATGAGTGGAACATCCCAATCAAGGTTAGAGGATTTGAGACACAAATGGAGAAATGGATGGGATCTTGTGACTGCATCATAACAAAACCTCCGGTACCCAATGTGGCAGAGAGAGGGCTTGGGTCCGATACCCGATGGGGTAGAAAATTTGAGCCTCCGGTACCCAATGGGGTAGAAAATTTGAGCCTCCGATACCTAATGGGGCAAAGAGAGGGCTTGGCTCTGATACCCGATGGGGTAGAAGATTTGAGCCTCCGGTACCCAATGGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006643 GO:0006664 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008194 GO:0008378 GO:0009267 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009605 GO:0009707 GO:0009941 GO:0009987 GO:0009991 GO:0016020 GO:0016036 GO:0016740 GO:0016757 GO:0016758 GO:0019374 GO:0019752 GO:0019867 GO:0031090 GO:0031667 GO:0031668 GO:0031669 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032787 GO:0033554 GO:0035250 GO:0042170 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0071496 GO:0071704 GO:0098588 GO:0098805 GO:1901135 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00561 ko01100 map00561 map01100

Pfam Domains

Protein Families

Glyco_tran_28_C MGDG_synth

Protein Analysis

185

Amino Acids

21.03

Weight (kDa)

8.69

Isoelectric Point (pI)

43.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001366)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G11810 AT2G11810 AT2G11810 AT2G11810 AT5G20410
fragaria_vesca	FvH4_1g02220 FvH4_1g02220 FvH4_1g02220 FvH4_1g21680
malus_domestica	MD02G1020400.v1.1 MD15G1163200.v1.1
prunus_persica	Prupe.7G251400_v2.0.a1
pyrus_communis	pycom02g01790 pycom15g14680
rosa_chinensis	RchiOBHm_Chr2g0087331 RchiOBHm_Chr3g0481741 RchiOBHm_Chr4g0421821 RchiOBHm_Chr6g0246901
rosa_laevigata	RLG00000003836 RLG00000015857
rosa_multiflora	Rmu_co8187728.1_g000001 Rmu_co8222200.1_g000001 Rmu_sc0000540.1_g000032 Rmu_sc0003367.1_g000024 Rmu_sc0006064.1_g000001 Rmu_sc0007105.1_g000003 Rmu_sc0016592.1_g000001 Rmu_sc0037595.1_g000001
rosa_roxburghii	Rroxscaffold_1G00028410 Rroxscaffold_2G00111080 Rroxscaffold_2G00153680 Rroxscaffold_3G00242830 Rroxscaffold_4G00276430 Rroxscaffold_4G00300210 Rroxscaffold_7G00214190
rosa_rugosa	Rorug01G0474200
rosa_samantha	Rh1CG122800 Rh2AG027800 Rh2AG631400 Rh2BG027300 Rh2BG300600 Rh2CG028100 Rh2DG027900 Rh4BG234200 Rh5CG220000 Rh6BG190700 Rh6CG106700 Rh6CG108200 Rh6DG097200 Rh6DG098600 Rh7CG224800
rosa_wichuraiana	Rw1G013320 Rw2G002200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	3 cut(s)	379, 445, 543
AccB1I	GGYRCC	3 cut(s)	379, 445, 543
AciI	CCGC	1 cut(s)	253
AclWI	GGATC	2 cut(s)	240, 355
AcoI	YGGCCR	1 cut(s)	250
AcsI	RAATTY	2 cut(s)	431, 463
AcuI	CTGAAG	1 cut(s)	64
AfaI	GTAC	4 cut(s)	8, 381, 447, 545
AfiI	CCNNNNNNNGG	1 cut(s)	307
AflIII	ACRYGT	1 cut(s)	178
AgsI	TTSAA	2 cut(s)	164, 281
AluBI	AGCT	2 cut(s)	137, 146
AluI	AGCT	2 cut(s)	137, 146
Alw21I	GWGCWC	1 cut(s)	148
Alw26I	GTCTC	2 cut(s)	274, 317
AlwI	GGATC	2 cut(s)	240, 355
AoxI	GGCC	3 cut(s)	157, 200, 250
ApoI	RAATTY	2 cut(s)	431, 463
Asp718I	GGTACC	3 cut(s)	379, 445, 543
AspS9I	GGNCC	2 cut(s)	201, 408
AsuC2I	CCSGG	1 cut(s)	99
AvaII	GGWCC	1 cut(s)	408
BanI	GGYRCC	3 cut(s)	379, 445, 543
BanII	GRGCYC	1 cut(s)	148
Bbv12I	GWGCWC	1 cut(s)	148
BccI	CCATC	5 cut(s)	130, 203, 337, 414, 512
BcnI	CCSGG	1 cut(s)	99
BcoDI	GTCTC	2 cut(s)	274, 317
BfaI	CTAG	2 cut(s)	149, 215
BisI	GCNGC	1 cut(s)	253
BlsI	GCNGC	1 cut(s)	254
Bme1390I	CCNGG	1 cut(s)	99
Bme18I	GGWCC	1 cut(s)	408
BmgT120I	GGNCC	2 cut(s)	201, 408
BmiI	GGNNCC	4 cut(s)	381, 409, 447, 545
BmrFI	CCNGG	1 cut(s)	99
BmsI	GCATC	2 cut(s)	33, 369
BpuMI	CCSGG	1 cut(s)	99
BsaAI	YACGTR	1 cut(s)	179
BsaJI	CCNNGG	2 cut(s)	98, 228
BsaWI	WCCGGW	3 cut(s)	376, 442, 540
BsaXI	ACNNNNNCTCC	4 cut(s)	254, 284, 358, 388
Bsc4I	CCNNNNNNNGG	1 cut(s)	307
BseDI	CCNNGG	2 cut(s)	98, 228
BseGI	GGATG	4 cut(s)	34, 94, 297, 348
BseLI	CCNNNNNNNGG	1 cut(s)	307
BshFI	GGCC	3 cut(s)	159, 202, 252
BshNI	GGYRCC	3 cut(s)	379, 445, 543
BsiHKAI	GWGCWC	1 cut(s)	148
BsiSI	CCGG	4 cut(s)	98, 377, 443, 541
BslFI	GGGAC	1 cut(s)	154
BslI	CCNNNNNNNGG	1 cut(s)	307
BsmAI	GTCTC	2 cut(s)	274, 317
BsmFI	GGGAC	1 cut(s)	154
BsnI	GGCC	3 cut(s)	159, 202, 252
Bsp1286I	GDGCHC	1 cut(s)	148
Bsp143I	GATC	2 cut(s)	232, 347
BspACI	CCGC	1 cut(s)	253
BspANI	GGCC	3 cut(s)	159, 202, 252
BspLI	GGNNCC	4 cut(s)	381, 409, 447, 545
BspPI	GGATC	2 cut(s)	240, 355
BspT107I	GGYRCC	3 cut(s)	379, 445, 543
BssECI	CCNNGG	2 cut(s)	98, 228
BssMI	GATC	2 cut(s)	232, 347
BssT1I	CCWWGG	1 cut(s)	228
Bst6I	CTCTTC	2 cut(s)	123, 159
BstBAI	YACGTR	1 cut(s)	179
BstF5I	GGATG	4 cut(s)	34, 94, 297, 348
BstKTI	GATC	2 cut(s)	235, 350
BstMAI	GTCTC	2 cut(s)	274, 317
BstMBI	GATC	2 cut(s)	232, 347
BstMWI	GCNNNNNNNGC	1 cut(s)	143
BstSCI	CCNGG	1 cut(s)	97
BstX2I	RGATCY	1 cut(s)	347
BstYI	RGATCY	1 cut(s)	347
BsuRI	GGCC	3 cut(s)	159, 202, 252
BtsCI	GGATG	4 cut(s)	34, 94, 297, 348
Cfr13I	GGNCC	2 cut(s)	201, 408
Csp6I	GTAC	4 cut(s)	7, 380, 446, 544
CviQI	GTAC	4 cut(s)	7, 380, 446, 544
DpnI	GATC	2 cut(s)	234, 349
DpnII	GATC	2 cut(s)	232, 347
EaeI	YGGCCR	1 cut(s)	250
Eam1104I	CTCTTC	2 cut(s)	123, 159
EarI	CTCTTC	2 cut(s)	123, 159
Ecl136II	GAGCTC	1 cut(s)	146
Eco130I	CCWWGG	1 cut(s)	228
Eco24I	GRGCYC	1 cut(s)	148
Eco47I	GGWCC	1 cut(s)	408
Eco53kI	GAGCTC	1 cut(s)	146
Eco57I	CTGAAG	1 cut(s)	64
EcoICRI	GAGCTC	1 cut(s)	146
EcoO109I	RGGNCCY	1 cut(s)	201
EcoT14I	CCWWGG	1 cut(s)	228
EcoT38I	GRGCYC	1 cut(s)	148
ErhI	CCWWGG	1 cut(s)	228
FaiI	YATR	5 cut(s)	23, 51, 154, 156, 365
FaqI	GGGAC	1 cut(s)	154
Fnu4HI	GCNGC	1 cut(s)	253
FokI	GGATG	4 cut(s)	21, 81, 284, 355
FriOI	GRGCYC	1 cut(s)	148
Fsp4HI	GCNGC	1 cut(s)	253
FspBI	CTAG	2 cut(s)	149, 215
GluI	GCNGC	1 cut(s)	253
HaeIII	GGCC	3 cut(s)	159, 202, 252
HapII	CCGG	4 cut(s)	98, 377, 443, 541
HinfI	GANTC	2 cut(s)	167, 281
HpaII	CCGG	4 cut(s)	98, 377, 443, 541
Hpy188I	TCNGA	6 cut(s)	83, 127, 286, 412, 476, 510
HpyCH4IV	ACGT	1 cut(s)	178
HpyCH4V	TGCA	2 cut(s)	46, 360
HpyF10VI	GCNNNNNNNGC	1 cut(s)	143
HpySE526I	ACGT	1 cut(s)	178
KpnI	GGTACC	3 cut(s)	383, 449, 547
Kzo9I	GATC	2 cut(s)	232, 347
LpnPI	CCDG	6 cut(s)	27, 111, 184, 390, 456, 554
LweI	GCATC	2 cut(s)	33, 369
MaeI	CTAG	2 cut(s)	149, 215
MaeII	ACGT	1 cut(s)	178
MaeIII	GTNAC	2 cut(s)	113, 353
MalI	GATC	2 cut(s)	234, 349
MboI	GATC	2 cut(s)	232, 347
MboII	GAAGA	4 cut(s)	96, 140, 176, 539
MflI	RGATCY	1 cut(s)	347
MhlI	GDGCHC	1 cut(s)	148
MluCI	AATT	3 cut(s)	24, 431, 463
MlyI	GAGTC	1 cut(s)	176
MspI	CCGG	4 cut(s)	98, 377, 443, 541
MspR9I	CCNGG	1 cut(s)	99
MwoI	GCNNNNNNNGC	1 cut(s)	143
NciI	CCSGG	1 cut(s)	99
NdeII	GATC	2 cut(s)	232, 347
NlaIV	GGNNCC	4 cut(s)	381, 409, 447, 545
NmuCI	GTSAC	1 cut(s)	353
PfeI	GAWTC	1 cut(s)	281
PkrI	GCNGC	1 cut(s)	254
PleI	GAGTC	1 cut(s)	175
PpsI	GAGTC	1 cut(s)	175
Ppu21I	YACGTR	1 cut(s)	179
Psp124BI	GAGCTC	1 cut(s)	148
PspN4I	GGNNCC	4 cut(s)	381, 409, 447, 545
PspPI	GGNCC	2 cut(s)	201, 408
PsuI	RGATCY	1 cut(s)	347
RsaI	GTAC	4 cut(s)	8, 381, 447, 545
RsaNI	GTAC	4 cut(s)	7, 380, 446, 544
SacI	GAGCTC	1 cut(s)	148
SatI	GCNGC	1 cut(s)	253
Sau3AI	GATC	2 cut(s)	232, 347
Sau96I	GGNCC	2 cut(s)	201, 408
SchI	GAGTC	1 cut(s)	176
ScrFI	CCNGG	1 cut(s)	99
SduI	GDGCHC	1 cut(s)	148
SetI	ASST	8 cut(s)	135, 139, 148, 181, 267, 312, 376, 483
SfaNI	GCATC	2 cut(s)	33, 369
SinI	GGWCC	1 cut(s)	408
Sse9I	AATT	3 cut(s)	24, 431, 463
SsiI	CCGC	1 cut(s)	253
SspMI	CTAG	2 cut(s)	149, 215
SstI	GAGCTC	1 cut(s)	148
StyD4I	CCNGG	1 cut(s)	97
StyI	CCWWGG	1 cut(s)	228
TaiI	ACGT	1 cut(s)	181
TasI	AATT	3 cut(s)	24, 431, 463
TatI	WGTACW	1 cut(s)	6
TauI	GCSGC	1 cut(s)	255
TfiI	GAWTC	1 cut(s)	281
TseFI	GTSAC	1 cut(s)	353
Tsp45I	GTSAC	1 cut(s)	353
TspDTI	ATGAA	2 cut(s)	23, 83
VpaK11BI	GGWCC	1 cut(s)	408
XapI	RAATTY	2 cut(s)	431, 463
XspI	CTAG	2 cut(s)	149, 215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.