Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001366

Physical Location & Seq

Genomic Coordinates Forward (+)

1947797 .. 1949717

Gene Structure 1921 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG027800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGGAGAGGTCTTACAAGTTCATGGTGAAACATGTTCAGCTATGGAAGGTTGCATTTCACAGTACTTCTCCTAGATGGATCCACAGTGTCTATCTTGCTGCCATTGCAGCCTACTATGCCAAGGAGGTTGAGGCTGGACTAATGGAGTACAAGCCAGACATCATAATTAGTGTTCATCCTTTGATGCAACATATTCCTCTTTGGGTTCTCAAATGGCAAGGACTTCAGAAGAAAGTGATTTTTGTGACGGTGATCACTGATCTTAACACTTGCCATCCTACATGGTTTCATCCAGGGGTCAATAGGTGTTACTGCCCATCACAGGAGGTAGCTAAAAGGGCTCTAGTAGATGGCCTTGAAGAGTCCCAAATACGCGTTTTTGGCTTGCCCATCAGGCCCTCTTTTGCCCGAGCGGTTATCTCCAAGGATCAACTCAGAAAAGAACTCGAAATGGACCCTGAATTGCCTGCAGTATTGCTGATGGGAGGCGGTGAAGGAATGGGGCCTGTAAAGGAAACTGCGAGAGCTCTGGGAGAATCCCTCTTTGATAAAGAATTGGGAAAACCAATTGGGCAGCTGATCGTTATATGTGGCCGCAATAAAAACCTTGTCTCCACACTGGAATCTGATGAGTGGAATATCCCAGTCAAGGTTAGAGGATTTGAGACACAAATGGAGAAATGGATGGGATCTTGTGACTGCATCATAACAAAGGCTGGACCAGGCACAATCGCGGAGGCATTGATCAGAGGGCTTCCTATTATTCTCAATGACTACATTCCTGGACAAGAAAAGGGCAATGTGCCTTATGTGGTAGACAATGGTGCTGGTGTCTTCACGAGAAGCCCCAAAGAAACAGCCAGGATTGTGGCAGAATGGTTCAGCACCAAGCCGGATGAGCTCAAAAGGATGTCTGAGAATGCACTTAAACTAGCGCAACCGGAGGCTGTTTTCGACATTGTTAAGGACATTCACGACCTCGCCTGCCAACGTGGTCCTCTTGCAAACATCCCTTACATGCTGACGTCCTCATTTACAAGTATAATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006643 GO:0006664 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008194 GO:0008378 GO:0009267 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009605 GO:0009707 GO:0009941 GO:0009987 GO:0009991 GO:0016020 GO:0016036 GO:0016740 GO:0016757 GO:0016758 GO:0019374 GO:0019752 GO:0019867 GO:0031090 GO:0031667 GO:0031668 GO:0031669 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032787 GO:0033554 GO:0035250 GO:0042170 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0071496 GO:0071704 GO:0098588 GO:0098805 GO:1901135 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00561 ko01100 map00561 map01100

Pfam Domains

Protein Families

Glyco_tran_28_C MGDG_synth

Protein Analysis

349

Amino Acids

39.1

Weight (kDa)

7.61

Isoelectric Point (pI)

39.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MGDG_synth	PF06925	1 - 131	1.9e-49	Monogalactosyldiacylglycerol (MGDG) synthase
Glyco_tran_28_C	PF04101	158 - 285	2.2e-09	Glycosyltransferase family 28 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001366)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G11810 AT2G11810 AT2G11810 AT2G11810 AT5G20410
fragaria_vesca	FvH4_1g02220 FvH4_1g02220 FvH4_1g02220 FvH4_1g21680
malus_domestica	MD02G1020400.v1.1 MD15G1163200.v1.1
prunus_persica	Prupe.7G251400_v2.0.a1
pyrus_communis	pycom02g01790 pycom15g14680
rosa_chinensis	RchiOBHm_Chr2g0087331 RchiOBHm_Chr3g0481741 RchiOBHm_Chr4g0421821 RchiOBHm_Chr6g0246901
rosa_laevigata	RLG00000003836 RLG00000015857
rosa_multiflora	Rmu_co8187728.1_g000001 Rmu_co8222200.1_g000001 Rmu_sc0000540.1_g000032 Rmu_sc0003367.1_g000024 Rmu_sc0006064.1_g000001 Rmu_sc0007105.1_g000003 Rmu_sc0016592.1_g000001 Rmu_sc0037595.1_g000001
rosa_roxburghii	Rroxscaffold_1G00028410 Rroxscaffold_2G00111080 Rroxscaffold_2G00153680 Rroxscaffold_3G00242830 Rroxscaffold_4G00276430 Rroxscaffold_4G00300210 Rroxscaffold_7G00214190
rosa_rugosa	Rorug01G0474200
rosa_samantha	Rh1CG122800 Rh2AG027800 Rh2AG631400 Rh2BG027300 Rh2BG300600 Rh2CG028100 Rh2DG027900 Rh4BG234200 Rh5CG220000 Rh6BG190700 Rh6CG106700 Rh6CG108200 Rh6DG097200 Rh6DG098600 Rh7CG224800
rosa_wichuraiana	Rw1G013320 Rw2G002200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1028
AccBSI	CCGCTC	1 cut(s)	413
AccI	GTMKAC	1 cut(s)	816
AccII	CGCG	2 cut(s)	375, 734
AciI	CCGC	4 cut(s)	413, 489, 595, 734
AclWI	GGATC	4 cut(s)	73, 86, 435, 697
AcoI	YGGCCR	1 cut(s)	592
AcuI	CTGAAG	1 cut(s)	209
AcyI	GRCGYC	1 cut(s)	1025
AfaI	GTAC	2 cut(s)	64, 149
AfiI	CCNNNNNNNGG	2 cut(s)	322, 649
AflIII	ACRYGT	2 cut(s)	31, 373
AgsI	TTSAA	1 cut(s)	359
AjnI	CCWGG	4 cut(s)	292, 721, 781, 860
AluBI	AGCT	5 cut(s)	40, 332, 527, 577, 901
AluI	AGCT	5 cut(s)	40, 332, 527, 577, 901
Alw21I	GWGCWC	2 cut(s)	529, 903
Alw26I	GTCTC	2 cut(s)	616, 659
AlwI	GGATC	4 cut(s)	73, 86, 435, 697
Ama87I	CYCGRG	1 cut(s)	408
AoxI	GGCC	4 cut(s)	352, 395, 503, 592
ApeKI	GCWGC	3 cut(s)	98, 107, 574
AspLEI	GCGC	1 cut(s)	937
AspS9I	GGNCC	5 cut(s)	396, 454, 503, 719, 995
AsuHPI	GGTGA	3 cut(s)	37, 262, 503
AvaI	CYCGRG	1 cut(s)	408
AvaII	GGWCC	3 cut(s)	454, 719, 995
BamHI	GGATCC	1 cut(s)	78
BanII	GRGCYC	3 cut(s)	343, 529, 903
BauI	CACGAG	1 cut(s)	838
BbsI	GAAGAC	1 cut(s)	826
Bbv12I	GWGCWC	2 cut(s)	529, 903
BbvI	GCAGC	3 cut(s)	85, 119, 586
BccI	CCATC	7 cut(s)	69, 282, 325, 344, 398, 475, 679
BciT130I	CCWGG	4 cut(s)	294, 723, 783, 862
BclI	TGATCA	2 cut(s)	252, 744
BcoDI	GTCTC	2 cut(s)	616, 659
BfaI	CTAG	3 cut(s)	72, 344, 932
BfmI	CTRYAG	1 cut(s)	468
BglI	GCCNNNNNGGC	1 cut(s)	394
BisI	GCNGC	4 cut(s)	99, 108, 575, 595
BlsI	GCNGC	4 cut(s)	100, 109, 576, 596
BmcAI	AGTACT	1 cut(s)	64
Bme1390I	CCNGG	4 cut(s)	294, 723, 783, 862
Bme18I	GGWCC	3 cut(s)	454, 719, 995
BmeT110I	CYCGRG	1 cut(s)	408
BmgT120I	GGNCC	5 cut(s)	396, 454, 503, 719, 995
BmiI	GGNNCC	3 cut(s)	80, 456, 504
BmrFI	CCNGG	4 cut(s)	294, 723, 783, 862
BmrI	ACTGGG	1 cut(s)	638
BmsI	GCATC	2 cut(s)	174, 711
BmuI	ACTGGG	1 cut(s)	638
BpiI	GAAGAC	1 cut(s)	826
BplI	GAGNNNNNCTC	2 cut(s)	525, 557
BsaHI	GRCGYC	1 cut(s)	1025
BsaJI	CCNNGG	3 cut(s)	120, 293, 423
BsaWI	WCCGGW	1 cut(s)	940
BsaXI	ACNNNNNCTCC	2 cut(s)	596, 626
Bsc4I	CCNNNNNNNGG	2 cut(s)	322, 649
Bse1I	ACTGG	2 cut(s)	624, 644
Bse3DI	GCAATG	2 cut(s)	102, 805
BseBI	CCWGG	4 cut(s)	294, 723, 783, 862
BseDI	CCNNGG	3 cut(s)	120, 293, 423
BseGI	GGATG	7 cut(s)	175, 274, 289, 690, 901, 915, 1008
BseLI	CCNNNNNNNGG	2 cut(s)	322, 649
BseMI	GCAATG	2 cut(s)	102, 805
BseMII	CTCAG	2 cut(s)	448, 906
BseNI	ACTGG	2 cut(s)	624, 644
BseXI	GCAGC	3 cut(s)	85, 119, 586
Bsh1236I	CGCG	2 cut(s)	375, 734
BshFI	GGCC	4 cut(s)	354, 397, 505, 594
BsiHKAI	GWGCWC	2 cut(s)	529, 903
BsiHKCI	CYCGRG	1 cut(s)	408
BsiSI	CCGG	2 cut(s)	893, 941
BslFI	GGGAC	1 cut(s)	349
BslI	CCNNNNNNNGG	2 cut(s)	322, 649
BsmAI	GTCTC	2 cut(s)	616, 659
BsmFI	GGGAC	1 cut(s)	349
BsmI	GAATGC	1 cut(s)	925
BsnI	GGCC	4 cut(s)	354, 397, 505, 594
BsoBI	CYCGRG	1 cut(s)	408
Bsp1286I	GDGCHC	3 cut(s)	343, 529, 903
Bsp143I	GATC	7 cut(s)	78, 252, 259, 427, 579, 689, 744
BspACI	CCGC	4 cut(s)	413, 489, 595, 734
BspANI	GGCC	4 cut(s)	354, 397, 505, 594
BspCNI	CTCAG	2 cut(s)	447, 907
BspFNI	CGCG	2 cut(s)	375, 734
BspLI	GGNNCC	3 cut(s)	80, 456, 504
BspMAI	CTGCAG	1 cut(s)	472
BspPI	GGATC	4 cut(s)	73, 86, 435, 697
BsrBI	CCGCTC	1 cut(s)	413
BsrDI	GCAATG	2 cut(s)	102, 805
BsrI	ACTGG	2 cut(s)	624, 644
BssECI	CCNNGG	3 cut(s)	120, 293, 423
BssMI	GATC	7 cut(s)	78, 252, 259, 427, 579, 689, 744
BssNI	GRCGYC	1 cut(s)	1025
BssSI	CACGAG	1 cut(s)	838
BssT1I	CCWWGG	2 cut(s)	120, 423
Bst2BI	CACGAG	1 cut(s)	838
Bst2UI	CCWGG	4 cut(s)	294, 723, 783, 862
Bst4CI	ACNGT	3 cut(s)	62, 86, 250
Bst6I	CTCTTC	1 cut(s)	354
BstACI	GRCGYC	1 cut(s)	1025
BstC8I	GCNNGC	3 cut(s)	386, 468, 985
BstDEI	CTNAG	2 cut(s)	434, 915
BstF5I	GGATG	7 cut(s)	175, 274, 289, 690, 901, 915, 1008
BstFNI	CGCG	2 cut(s)	375, 734
BstHHI	GCGC	1 cut(s)	937
BstKTI	GATC	7 cut(s)	81, 255, 262, 430, 582, 692, 747
BstMAI	GTCTC	2 cut(s)	616, 659
BstMBI	GATC	7 cut(s)	78, 252, 259, 427, 579, 689, 744
BstMWI	GCNNNNNNNGC	7 cut(s)	104, 107, 116, 338, 381, 394, 898
BstNI	CCWGG	4 cut(s)	294, 723, 783, 862
BstNSI	RCATGY	2 cut(s)	35, 1021
BstSCI	CCNGG	4 cut(s)	292, 721, 781, 860
BstSFI	CTRYAG	1 cut(s)	468
BstUI	CGCG	2 cut(s)	375, 734
BstV1I	GCAGC	3 cut(s)	85, 119, 586
BstV2I	GAAGAC	1 cut(s)	826
BstX2I	RGATCY	2 cut(s)	78, 689
BstXI	CCANNNNNNTGG	1 cut(s)	868
BstYI	RGATCY	2 cut(s)	78, 689
BsuRI	GGCC	4 cut(s)	354, 397, 505, 594
BtsCI	GGATG	7 cut(s)	175, 274, 289, 690, 901, 915, 1008
BtsIMutI	CAGTG	3 cut(s)	91, 255, 617
Cac8I	GCNNGC	3 cut(s)	386, 468, 985
CfoI	GCGC	1 cut(s)	937
Cfr13I	GGNCC	5 cut(s)	396, 454, 503, 719, 995
Csp6I	GTAC	2 cut(s)	63, 148
CviAII	CATG	4 cut(s)	22, 32, 282, 1018
CviQI	GTAC	2 cut(s)	63, 148
DdeI	CTNAG	2 cut(s)	434, 915
DpnI	GATC	7 cut(s)	80, 254, 261, 429, 581, 691, 746
DpnII	GATC	7 cut(s)	78, 252, 259, 427, 579, 689, 744
EaeI	YGGCCR	1 cut(s)	592
Eam1104I	CTCTTC	1 cut(s)	354
EarI	CTCTTC	1 cut(s)	354
Ecl136II	GAGCTC	2 cut(s)	527, 901
Eco130I	CCWWGG	2 cut(s)	120, 423
Eco24I	GRGCYC	3 cut(s)	343, 529, 903
Eco47I	GGWCC	3 cut(s)	454, 719, 995
Eco53kI	GAGCTC	2 cut(s)	527, 901
Eco57I	CTGAAG	1 cut(s)	209
Eco88I	CYCGRG	1 cut(s)	408
EcoICRI	GAGCTC	2 cut(s)	527, 901
EcoO109I	RGGNCCY	2 cut(s)	396, 503
EcoRII	CCWGG	4 cut(s)	292, 721, 781, 860
EcoT14I	CCWWGG	2 cut(s)	120, 423
EcoT38I	GRGCYC	3 cut(s)	343, 529, 903
ErhI	CCWWGG	2 cut(s)	120, 423
FaeI	CATG	4 cut(s)	25, 35, 285, 1021
FaqI	GGGAC	1 cut(s)	349
FatI	CATG	4 cut(s)	21, 31, 281, 1017
FbaI	TGATCA	2 cut(s)	252, 744
FblI	GTMKAC	1 cut(s)	816
Fnu4HI	GCNGC	4 cut(s)	99, 108, 575, 595
FokI	GGATG	7 cut(s)	162, 261, 276, 697, 908, 922, 995
FriOI	GRGCYC	3 cut(s)	343, 529, 903
Fsp4HI	GCNGC	4 cut(s)	99, 108, 575, 595
FspBI	CTAG	3 cut(s)	72, 344, 932
GlaI	GCGC	1 cut(s)	936
GluI	GCNGC	4 cut(s)	99, 108, 575, 595
HaeIII	GGCC	4 cut(s)	354, 397, 505, 594
HapII	CCGG	2 cut(s)	893, 941
HhaI	GCGC	1 cut(s)	937
Hin1I	GRCGYC	1 cut(s)	1025
Hin1II	CATG	4 cut(s)	25, 35, 285, 1021
Hin6I	GCGC	1 cut(s)	935
HinP1I	GCGC	1 cut(s)	935
HinfI	GANTC	3 cut(s)	362, 536, 623
HpaII	CCGG	2 cut(s)	893, 941
HphI	GGTGA	3 cut(s)	37, 262, 503
Hpy166II	GTNNAC	1 cut(s)	817
Hpy188I	TCNGA	5 cut(s)	228, 437, 628, 749, 916
Hpy188III	TCNNGA	2 cut(s)	838, 974
Hpy8I	GTNNAC	1 cut(s)	817
HpyAV	CCTTC	2 cut(s)	40, 488
HpyCH4III	ACNGT	3 cut(s)	62, 86, 250
HpyCH4IV	ACGT	2 cut(s)	991, 1025
HpyCH4V	TGCA	7 cut(s)	53, 107, 187, 470, 702, 923, 1004
HpyF10VI	GCNNNNNNNGC	7 cut(s)	104, 107, 116, 338, 381, 394, 898
HpyF3I	CTNAG	2 cut(s)	434, 915
HpySE526I	ACGT	2 cut(s)	991, 1025
Hsp92I	GRCGYC	1 cut(s)	1025
Hsp92II	CATG	4 cut(s)	25, 35, 285, 1021
HspAI	GCGC	1 cut(s)	935
Ksp22I	TGATCA	2 cut(s)	252, 744
Kzo9I	GATC	7 cut(s)	78, 252, 259, 427, 579, 689, 744
Lsp1109I	GCAGC	3 cut(s)	85, 119, 586
LweI	GCATC	2 cut(s)	174, 711
MaeI	CTAG	3 cut(s)	72, 344, 932
MaeII	ACGT	2 cut(s)	991, 1025
MaeIII	GTNAC	3 cut(s)	244, 308, 695
MalI	GATC	7 cut(s)	80, 254, 261, 429, 581, 691, 746
MbiI	CCGCTC	1 cut(s)	413
MboI	GATC	7 cut(s)	78, 252, 259, 427, 579, 689, 744
MboII	GAAGA	3 cut(s)	241, 371, 826
MfeI	CAATTG	1 cut(s)	567
MflI	RGATCY	2 cut(s)	78, 689
MhlI	GDGCHC	3 cut(s)	343, 529, 903
MluCI	AATT	4 cut(s)	165, 461, 554, 567
MluI	ACGCGT	1 cut(s)	373
MlyI	GAGTC	1 cut(s)	371
MseI	TTAA	3 cut(s)	264, 927, 963
MspA1I	CMGCKG	1 cut(s)	577
MspI	CCGG	2 cut(s)	893, 941
MspR9I	CCNGG	4 cut(s)	294, 723, 783, 862
MunI	CAATTG	1 cut(s)	567
Mva1269I	GAATGC	1 cut(s)	925
MvaI	CCWGG	4 cut(s)	294, 723, 783, 862
MvnI	CGCG	2 cut(s)	375, 734
MwoI	GCNNNNNNNGC	7 cut(s)	104, 107, 116, 338, 381, 394, 898
NdeII	GATC	7 cut(s)	78, 252, 259, 427, 579, 689, 744
NlaIII	CATG	4 cut(s)	25, 35, 285, 1021
NlaIV	GGNNCC	3 cut(s)	80, 456, 504
NmuCI	GTSAC	2 cut(s)	244, 695
NspI	RCATGY	2 cut(s)	35, 1021
PciI	ACATGT	1 cut(s)	31
PctI	GAATGC	1 cut(s)	925
PfeI	GAWTC	2 cut(s)	536, 623
PfoI	TCCNGGA	1 cut(s)	781
PkrI	GCNGC	4 cut(s)	100, 109, 576, 596
PleI	GAGTC	1 cut(s)	370
PpsI	GAGTC	1 cut(s)	370
PscI	ACATGT	1 cut(s)	31
Psp124BI	GAGCTC	2 cut(s)	529, 903
Psp6I	CCWGG	4 cut(s)	292, 721, 781, 860
PspGI	CCWGG	4 cut(s)	292, 721, 781, 860
PspN4I	GGNNCC	3 cut(s)	80, 456, 504
PspPI	GGNCC	5 cut(s)	396, 454, 503, 719, 995
PstI	CTGCAG	1 cut(s)	472
PsuI	RGATCY	2 cut(s)	78, 689
PvuII	CAGCTG	1 cut(s)	577
RsaI	GTAC	2 cut(s)	64, 149
RsaNI	GTAC	2 cut(s)	63, 148
SacI	GAGCTC	2 cut(s)	529, 903
SaqAI	TTAA	3 cut(s)	264, 927, 963
SatI	GCNGC	4 cut(s)	99, 108, 575, 595
Sau3AI	GATC	7 cut(s)	78, 252, 259, 427, 579, 689, 744
Sau96I	GGNCC	5 cut(s)	396, 454, 503, 719, 995
ScaI	AGTACT	1 cut(s)	64
SchI	GAGTC	1 cut(s)	371
ScrFI	CCNGG	4 cut(s)	294, 723, 783, 862
SduI	GDGCHC	3 cut(s)	343, 529, 903
SfaNI	GCATC	2 cut(s)	174, 711
SfcI	CTRYAG	1 cut(s)	468
SinI	GGWCC	3 cut(s)	454, 719, 995
Sse9I	AATT	4 cut(s)	165, 461, 554, 567
SsiI	CCGC	4 cut(s)	413, 489, 595, 734
SspMI	CTAG	3 cut(s)	72, 344, 932
SstI	GAGCTC	2 cut(s)	529, 903
StyD4I	CCNGG	4 cut(s)	292, 721, 781, 860
StyI	CCWWGG	2 cut(s)	120, 423
TaaI	ACNGT	3 cut(s)	62, 86, 250
TaiI	ACGT	2 cut(s)	994, 1028
TaqI	TCGA	2 cut(s)	447, 954
TasI	AATT	4 cut(s)	165, 461, 554, 567
TatI	WGTACW	2 cut(s)	62, 147
TauI	GCSGC	1 cut(s)	597
TfiI	GAWTC	2 cut(s)	536, 623
Tru1I	TTAA	3 cut(s)	264, 927, 963
Tru9I	TTAA	3 cut(s)	264, 927, 963
TscAI	CASTG	3 cut(s)	91, 262, 624
TseFI	GTSAC	2 cut(s)	244, 695
TseI	GCWGC	3 cut(s)	98, 107, 574
Tsp45I	GTSAC	2 cut(s)	244, 695
TspDTI	ATGAA	3 cut(s)	10, 164, 278
TspRI	CASTG	3 cut(s)	91, 262, 624
VpaK11BI	GGWCC	3 cut(s)	454, 719, 995
XceI	RCATGY	2 cut(s)	35, 1021
XmiI	GTMKAC	1 cut(s)	816
XspI	CTAG	3 cut(s)	72, 344, 932
ZraI	GACGTC	1 cut(s)	1026
ZrmI	AGTACT	1 cut(s)	64

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.