Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0001366

Physical Location & Seq

Genomic Coordinates Reverse (-)

12401323 .. 12408759

Gene Structure 7437 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG108200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGGACAGGCCTTACAAGTTCATGGTGAAACATGTTCAGCTATGGAAGGTTGCATTTCACAGTACTTCTCCTAGATGGATCCACAGTGTCTATCTTGCTGCCATTGCAGCCTACTATGCCAAGGAGGTGGAGGCTGGTCTAATGGAGTACAAGCCAGACATCATAATTATGATTACTGATCTCAACACTTGCCATCCTACATGGTTTCATCTGGGGGTCAATAGGTGTTACCGCCCATCGGAGGAGGTAGCTAAAAGAGCTCTAGTATATGGCCTTGAAGAGTCTCAAAAACGTGTTTTTGGCTTGCCCATCAGGCCCTCTTTGGCCCGAGCGGTTATCTCCAAGGATCAACTCATTATTTGTGGCCGCAATAAAAACCTTGTCTCCACGCTTGAATCTGATGAGTGGAACATCCCAGTCAAGCACATGTTGCATACGGCAAGGCTCACTCAGGGATTGCTTGAAGAGGAGAGTCGGGGTTGGTGCGTTGTAACAGGGCAGTGGGGAATTTCTTTACAGCTAGTCCTTTGTGCAATTCTTGGTTCCAGCCAGATTGCAGGATTAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006643 GO:0006664 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008194 GO:0008378 GO:0009267 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009605 GO:0009707 GO:0009941 GO:0009987 GO:0009991 GO:0016020 GO:0016036 GO:0016740 GO:0016757 GO:0016758 GO:0019374 GO:0019752 GO:0019867 GO:0031090 GO:0031667 GO:0031668 GO:0031669 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032787 GO:0033554 GO:0035250 GO:0042170 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0071496 GO:0071704 GO:0098588 GO:0098805 GO:1901135 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00561 ko01100 map00561 map01100

Pfam Domains

Protein Families

Glyco_tran_28_C MGDG_synth

Protein Analysis

189

Amino Acids

21.49

Weight (kDa)

8.59

Isoelectric Point (pI)

44.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MGDG_synth	PF06925	3 - 57	5.9e-12	Monogalactosyldiacylglycerol (MGDG) synthase
MGDG_synth	PF06925	57 - 104	1.4e-11	Monogalactosyldiacylglycerol (MGDG) synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001366)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G11810 AT2G11810 AT2G11810 AT2G11810 AT5G20410
fragaria_vesca	FvH4_1g02220 FvH4_1g02220 FvH4_1g02220 FvH4_1g21680
malus_domestica	MD02G1020400.v1.1 MD15G1163200.v1.1
prunus_persica	Prupe.7G251400_v2.0.a1
pyrus_communis	pycom02g01790 pycom15g14680
rosa_chinensis	RchiOBHm_Chr2g0087331 RchiOBHm_Chr3g0481741 RchiOBHm_Chr4g0421821 RchiOBHm_Chr6g0246901
rosa_laevigata	RLG00000003836 RLG00000015857
rosa_multiflora	Rmu_co8187728.1_g000001 Rmu_co8222200.1_g000001 Rmu_sc0000540.1_g000032 Rmu_sc0003367.1_g000024 Rmu_sc0006064.1_g000001 Rmu_sc0007105.1_g000003 Rmu_sc0016592.1_g000001 Rmu_sc0037595.1_g000001
rosa_roxburghii	Rroxscaffold_1G00028410 Rroxscaffold_2G00111080 Rroxscaffold_2G00153680 Rroxscaffold_3G00242830 Rroxscaffold_4G00276430 Rroxscaffold_4G00300210 Rroxscaffold_7G00214190
rosa_rugosa	Rorug01G0474200
rosa_samantha	Rh1CG122800 Rh2AG027800 Rh2AG631400 Rh2BG027300 Rh2BG300600 Rh2CG028100 Rh2DG027900 Rh4BG234200 Rh5CG220000 Rh6BG190700 Rh6CG106700 Rh6CG108200 Rh6DG097200 Rh6DG098600 Rh7CG224800
rosa_wichuraiana	Rw1G013320 Rw2G002200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	332
AciI	CCGC	3 cut(s)	232, 332, 367
AclWI	GGATC	3 cut(s)	73, 86, 354
AcoI	YGGCCR	1 cut(s)	364
AcsI	RAATTY	1 cut(s)	507
AfaI	GTAC	2 cut(s)	64, 149
AfiI	CCNNNNNNNGG	2 cut(s)	238, 241
AflIII	ACRYGT	3 cut(s)	31, 292, 426
AgsI	TTSAA	3 cut(s)	278, 395, 464
AluBI	AGCT	4 cut(s)	40, 251, 260, 520
AluI	AGCT	4 cut(s)	40, 251, 260, 520
Alw21I	GWGCWC	1 cut(s)	262
Alw26I	GTCTC	2 cut(s)	288, 388
AlwI	GGATC	3 cut(s)	73, 86, 354
Ama87I	CYCGRG	1 cut(s)	327
AoxI	GGCC	5 cut(s)	8, 271, 314, 324, 364
ApeKI	GCWGC	2 cut(s)	98, 107
ApoI	RAATTY	1 cut(s)	507
AspS9I	GGNCC	2 cut(s)	315, 325
AsuHPI	GGTGA	1 cut(s)	37
AvaI	CYCGRG	1 cut(s)	327
BamHI	GGATCC	1 cut(s)	78
BanII	GRGCYC	1 cut(s)	262
Bbv12I	GWGCWC	1 cut(s)	262
BbvI	GCAGC	2 cut(s)	85, 119
BccI	CCATC	4 cut(s)	69, 201, 244, 317
BceAI	ACGGC	1 cut(s)	453
BcoDI	GTCTC	2 cut(s)	288, 388
BfaI	CTAG	3 cut(s)	72, 263, 521
BglI	GCCNNNNNGGC	1 cut(s)	313
BisI	GCNGC	3 cut(s)	99, 108, 367
BlsI	GCNGC	3 cut(s)	100, 109, 368
BmcAI	AGTACT	1 cut(s)	64
BmeT110I	CYCGRG	1 cut(s)	327
BmgT120I	GGNCC	2 cut(s)	315, 325
BmiI	GGNNCC	2 cut(s)	80, 544
BmrI	ACTGGG	1 cut(s)	410
BmuI	ACTGGG	1 cut(s)	410
BsaJI	CCNNGG	2 cut(s)	120, 342
BsaXI	ACNNNNNCTCC	2 cut(s)	368, 398
Bsc4I	CCNNNNNNNGG	2 cut(s)	238, 241
Bse1I	ACTGG	1 cut(s)	416
Bse3DI	GCAATG	1 cut(s)	102
BseDI	CCNNGG	2 cut(s)	120, 342
BseGI	GGATG	2 cut(s)	193, 411
BseLI	CCNNNNNNNGG	2 cut(s)	238, 241
BseMI	GCAATG	1 cut(s)	102
BseMII	CTCAG	1 cut(s)	464
BseNI	ACTGG	1 cut(s)	416
BseRI	GAGGAG	2 cut(s)	257, 482
BseXI	GCAGC	2 cut(s)	85, 119
BshFI	GGCC	5 cut(s)	10, 273, 316, 326, 366
BsiHKAI	GWGCWC	1 cut(s)	262
BsiHKCI	CYCGRG	1 cut(s)	327
BslI	CCNNNNNNNGG	2 cut(s)	238, 241
BsmAI	GTCTC	2 cut(s)	288, 388
BsnI	GGCC	5 cut(s)	10, 273, 316, 326, 366
BsoBI	CYCGRG	1 cut(s)	327
Bsp1286I	GDGCHC	1 cut(s)	262
Bsp143I	GATC	3 cut(s)	78, 178, 346
BspACI	CCGC	3 cut(s)	232, 332, 367
BspANI	GGCC	5 cut(s)	10, 273, 316, 326, 366
BspCNI	CTCAG	1 cut(s)	463
BspLI	GGNNCC	2 cut(s)	80, 544
BspPI	GGATC	3 cut(s)	73, 86, 354
BsrBI	CCGCTC	1 cut(s)	332
BsrDI	GCAATG	1 cut(s)	102
BsrI	ACTGG	1 cut(s)	416
BssECI	CCNNGG	2 cut(s)	120, 342
BssMI	GATC	3 cut(s)	78, 178, 346
BssT1I	CCWWGG	2 cut(s)	120, 342
Bst4CI	ACNGT	2 cut(s)	62, 86
Bst6I	CTCTTC	2 cut(s)	273, 459
BstAPI	GCANNNNNTGC	1 cut(s)	430
BstC8I	GCNNGC	1 cut(s)	305
BstDEI	CTNAG	1 cut(s)	450
BstF5I	GGATG	2 cut(s)	193, 411
BstKTI	GATC	3 cut(s)	81, 181, 349
BstMAI	GTCTC	2 cut(s)	288, 388
BstMBI	GATC	3 cut(s)	78, 178, 346
BstMWI	GCNNNNNNNGC	6 cut(s)	104, 107, 116, 257, 313, 430
BstNSI	RCATGY	2 cut(s)	35, 430
BstV1I	GCAGC	2 cut(s)	85, 119
BstX2I	RGATCY	1 cut(s)	78
BstXI	CCANNNNNNTGG	1 cut(s)	127
BstYI	RGATCY	1 cut(s)	78
BsuRI	GGCC	5 cut(s)	10, 273, 316, 326, 366
BtsCI	GGATG	2 cut(s)	193, 411
BtsI	GCAGTG	1 cut(s)	506
BtsIMutI	CAGTG	2 cut(s)	91, 506
Cac8I	GCNNGC	1 cut(s)	305
Cfr13I	GGNCC	2 cut(s)	315, 325
Csp6I	GTAC	2 cut(s)	63, 148
CviAII	CATG	4 cut(s)	22, 32, 201, 427
CviQI	GTAC	2 cut(s)	63, 148
DdeI	CTNAG	1 cut(s)	450
DpnI	GATC	3 cut(s)	80, 180, 348
DpnII	GATC	3 cut(s)	78, 178, 346
EaeI	YGGCCR	1 cut(s)	364
Eam1104I	CTCTTC	2 cut(s)	273, 459
EarI	CTCTTC	2 cut(s)	273, 459
Ecl136II	GAGCTC	1 cut(s)	260
Eco130I	CCWWGG	2 cut(s)	120, 342
Eco147I	AGGCCT	1 cut(s)	10
Eco24I	GRGCYC	1 cut(s)	262
Eco53kI	GAGCTC	1 cut(s)	260
Eco88I	CYCGRG	1 cut(s)	327
EcoICRI	GAGCTC	1 cut(s)	260
EcoO109I	RGGNCCY	1 cut(s)	315
EcoT14I	CCWWGG	2 cut(s)	120, 342
EcoT38I	GRGCYC	1 cut(s)	262
ErhI	CCWWGG	2 cut(s)	120, 342
FaeI	CATG	4 cut(s)	25, 35, 204, 430
FatI	CATG	4 cut(s)	21, 31, 200, 426
Fnu4HI	GCNGC	3 cut(s)	99, 108, 367
FokI	GGATG	2 cut(s)	180, 398
FriOI	GRGCYC	1 cut(s)	262
Fsp4HI	GCNGC	3 cut(s)	99, 108, 367
FspBI	CTAG	3 cut(s)	72, 263, 521
GluI	GCNGC	3 cut(s)	99, 108, 367
HaeIII	GGCC	5 cut(s)	10, 273, 316, 326, 366
Hin1II	CATG	4 cut(s)	25, 35, 204, 430
HinfI	GANTC	3 cut(s)	281, 395, 472
HphI	GGTGA	1 cut(s)	37
Hpy188I	TCNGA	2 cut(s)	241, 400
HpyAV	CCTTC	1 cut(s)	40
HpyCH4III	ACNGT	2 cut(s)	62, 86
HpyCH4IV	ACGT	1 cut(s)	292
HpyCH4V	TGCA	5 cut(s)	53, 107, 433, 533, 557
HpyF10VI	GCNNNNNNNGC	6 cut(s)	104, 107, 116, 257, 313, 430
HpyF3I	CTNAG	1 cut(s)	450
HpySE526I	ACGT	1 cut(s)	292
Hsp92II	CATG	4 cut(s)	25, 35, 204, 430
Kzo9I	GATC	3 cut(s)	78, 178, 346
Lsp1109I	GCAGC	2 cut(s)	85, 119
MaeI	CTAG	3 cut(s)	72, 263, 521
MaeII	ACGT	1 cut(s)	292
MaeIII	GTNAC	2 cut(s)	227, 490
MalI	GATC	3 cut(s)	80, 180, 348
MbiI	CCGCTC	1 cut(s)	332
MboI	GATC	3 cut(s)	78, 178, 346
MboII	GAAGA	2 cut(s)	290, 476
MflI	RGATCY	1 cut(s)	78
MhlI	GDGCHC	1 cut(s)	262
MluCI	AATT	3 cut(s)	165, 507, 534
MlyI	GAGTC	2 cut(s)	290, 481
MnlI	CCTC	6 cut(s)	118, 124, 235, 238, 328, 460
MslI	CAYNNNNRTG	1 cut(s)	167
MwoI	GCNNNNNNNGC	6 cut(s)	104, 107, 116, 257, 313, 430
NdeII	GATC	3 cut(s)	78, 178, 346
NlaIII	CATG	4 cut(s)	25, 35, 204, 430
NlaIV	GGNNCC	2 cut(s)	80, 544
NspI	RCATGY	2 cut(s)	35, 430
PceI	AGGCCT	1 cut(s)	10
PciI	ACATGT	2 cut(s)	31, 426
PfeI	GAWTC	1 cut(s)	395
PkrI	GCNGC	3 cut(s)	100, 109, 368
PleI	GAGTC	2 cut(s)	289, 480
PpsI	GAGTC	2 cut(s)	289, 480
PscI	ACATGT	2 cut(s)	31, 426
Psp124BI	GAGCTC	1 cut(s)	262
PspN4I	GGNNCC	2 cut(s)	80, 544
PspPI	GGNCC	2 cut(s)	315, 325
PsuI	RGATCY	1 cut(s)	78
RsaI	GTAC	2 cut(s)	64, 149
RsaNI	GTAC	2 cut(s)	63, 148
RseI	CAYNNNNRTG	1 cut(s)	167
SacI	GAGCTC	1 cut(s)	262
SatI	GCNGC	3 cut(s)	99, 108, 367
Sau3AI	GATC	3 cut(s)	78, 178, 346
Sau96I	GGNCC	2 cut(s)	315, 325
ScaI	AGTACT	1 cut(s)	64
SchI	GAGTC	2 cut(s)	290, 481
SduI	GDGCHC	1 cut(s)	262
SmiMI	CAYNNNNRTG	1 cut(s)	167
Sse9I	AATT	3 cut(s)	165, 507, 534
SseBI	AGGCCT	1 cut(s)	10
SsiI	CCGC	3 cut(s)	232, 332, 367
SspMI	CTAG	3 cut(s)	72, 263, 521
SstI	GAGCTC	1 cut(s)	262
StuI	AGGCCT	1 cut(s)	10
StyI	CCWWGG	2 cut(s)	120, 342
TaaI	ACNGT	2 cut(s)	62, 86
TaiI	ACGT	1 cut(s)	295
TasI	AATT	3 cut(s)	165, 507, 534
TatI	WGTACW	2 cut(s)	62, 147
TauI	GCSGC	1 cut(s)	369
TfiI	GAWTC	1 cut(s)	395
TscAI	CASTG	2 cut(s)	91, 506
TseI	GCWGC	2 cut(s)	98, 107
TspDTI	ATGAA	2 cut(s)	10, 197
TspRI	CASTG	2 cut(s)	91, 506
XapI	RAATTY	1 cut(s)	507
XceI	RCATGY	2 cut(s)	35, 430
XspI	CTAG	3 cut(s)	72, 263, 521
ZrmI	AGTACT	1 cut(s)	64

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.