Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001366

Physical Location & Seq

Genomic Coordinates Reverse (-)

36201841 .. 36202131

Gene Structure 291 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00028410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 186 bp

ATGCAGGTTTCGTCGGGGGTCAATAGGTGTTACTGCCCATCGGAGGAGGTAGCTAAAAGGGCTCTAGTAGATGGCCTTGAAGAGTCCCAAATATGTGTTTTTGGCTTGCCCATCGTGCCCTCTTTTGCCCGAGCGGTTATCTCCAAGGATCAACTTAGAGAAGAACTCGAAATGGACCCCGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006643 GO:0006664 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008194 GO:0008378 GO:0009267 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009605 GO:0009707 GO:0009941 GO:0009987 GO:0009991 GO:0016020 GO:0016036 GO:0016740 GO:0016757 GO:0016758 GO:0019374 GO:0019752 GO:0019867 GO:0031090 GO:0031667 GO:0031668 GO:0031669 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032787 GO:0033554 GO:0035250 GO:0042170 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0071496 GO:0071704 GO:0098588 GO:0098805 GO:1901135 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00561 ko01100 map00561 map01100

Pfam Domains

Protein Families

Glyco_tran_28_C MGDG_synth

Protein Analysis

61

Amino Acids

6.77

Weight (kDa)

4.53

Isoelectric Point (pI)

58.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MGDG_synth	PF06925	4 - 38	1.6e-07	Monogalactosyldiacylglycerol (MGDG) synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001366)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G11810 AT2G11810 AT2G11810 AT2G11810 AT5G20410
fragaria_vesca	FvH4_1g02220 FvH4_1g02220 FvH4_1g02220 FvH4_1g21680
malus_domestica	MD02G1020400.v1.1 MD15G1163200.v1.1
prunus_persica	Prupe.7G251400_v2.0.a1
pyrus_communis	pycom02g01790 pycom15g14680
rosa_chinensis	RchiOBHm_Chr2g0087331 RchiOBHm_Chr3g0481741 RchiOBHm_Chr4g0421821 RchiOBHm_Chr6g0246901
rosa_laevigata	RLG00000003836 RLG00000015857
rosa_multiflora	Rmu_co8187728.1_g000001 Rmu_co8222200.1_g000001 Rmu_sc0000540.1_g000032 Rmu_sc0003367.1_g000024 Rmu_sc0006064.1_g000001 Rmu_sc0007105.1_g000003 Rmu_sc0016592.1_g000001 Rmu_sc0037595.1_g000001
rosa_roxburghii	Rroxscaffold_1G00028410 Rroxscaffold_2G00111080 Rroxscaffold_2G00153680 Rroxscaffold_3G00242830 Rroxscaffold_4G00276430 Rroxscaffold_4G00300210 Rroxscaffold_7G00214190
rosa_rugosa	Rorug01G0474200
rosa_samantha	Rh1CG122800 Rh2AG027800 Rh2AG631400 Rh2BG027300 Rh2BG300600 Rh2CG028100 Rh2DG027900 Rh4BG234200 Rh5CG220000 Rh6BG190700 Rh6CG106700 Rh6CG108200 Rh6DG097200 Rh6DG098600 Rh7CG224800
rosa_wichuraiana	Rw1G013320 Rw2G002200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	134
AciI	CCGC	1 cut(s)	134
AclWI	GGATC	1 cut(s)	156
AfiI	CCNNNNNNNGG	1 cut(s)	43
AgsI	TTSAA	1 cut(s)	80
AluBI	AGCT	1 cut(s)	53
AluI	AGCT	1 cut(s)	53
AlwI	GGATC	1 cut(s)	156
Ama87I	CYCGRG	1 cut(s)	129
AoxI	GGCC	1 cut(s)	73
AspS9I	GGNCC	1 cut(s)	175
AvaI	CYCGRG	1 cut(s)	129
AvaII	GGWCC	1 cut(s)	175
BaeGI	GKGCMC	1 cut(s)	120
BanII	GRGCYC	1 cut(s)	64
BccI	CCATC	3 cut(s)	46, 65, 119
BfaI	CTAG	1 cut(s)	65
Bme18I	GGWCC	1 cut(s)	175
BmeT110I	CYCGRG	1 cut(s)	129
BmgT120I	GGNCC	1 cut(s)	175
BmiI	GGNNCC	1 cut(s)	177
BplI	GAGNNNNNCTC	2 cut(s)	150, 182
BsaJI	CCNNGG	1 cut(s)	144
Bsc4I	CCNNNNNNNGG	1 cut(s)	43
BseDI	CCNNGG	1 cut(s)	144
BseLI	CCNNNNNNNGG	1 cut(s)	43
BseRI	GAGGAG	1 cut(s)	59
BseSI	GKGCMC	1 cut(s)	120
BshFI	GGCC	1 cut(s)	75
BsiHKCI	CYCGRG	1 cut(s)	129
BslFI	GGGAC	1 cut(s)	70
BslI	CCNNNNNNNGG	1 cut(s)	43
BsmFI	GGGAC	1 cut(s)	70
BsnI	GGCC	1 cut(s)	75
BsoBI	CYCGRG	1 cut(s)	129
Bsp1286I	GDGCHC	2 cut(s)	64, 120
Bsp143I	GATC	1 cut(s)	148
BspACI	CCGC	1 cut(s)	134
BspANI	GGCC	1 cut(s)	75
BspLI	GGNNCC	1 cut(s)	177
BspPI	GGATC	1 cut(s)	156
BsrBI	CCGCTC	1 cut(s)	134
BssECI	CCNNGG	1 cut(s)	144
BssMI	GATC	1 cut(s)	148
BssT1I	CCWWGG	1 cut(s)	144
Bst6I	CTCTTC	1 cut(s)	75
BstC8I	GCNNGC	1 cut(s)	107
BstDEI	CTNAG	1 cut(s)	155
BstKTI	GATC	1 cut(s)	151
BstMBI	GATC	1 cut(s)	148
BstMWI	GCNNNNNNNGC	2 cut(s)	59, 115
BstSLI	GKGCMC	1 cut(s)	120
BsuRI	GGCC	1 cut(s)	75
Cac8I	GCNNGC	1 cut(s)	107
Cfr13I	GGNCC	1 cut(s)	175
CviJI	RGCY	4 cut(s)	53, 62, 75, 105
CviKI_1	RGCY	4 cut(s)	53, 62, 75, 105
DdeI	CTNAG	1 cut(s)	155
DpnI	GATC	1 cut(s)	150
DpnII	GATC	1 cut(s)	148
Eam1104I	CTCTTC	1 cut(s)	75
EarI	CTCTTC	1 cut(s)	75
Eco130I	CCWWGG	1 cut(s)	144
Eco24I	GRGCYC	1 cut(s)	64
Eco47I	GGWCC	1 cut(s)	175
Eco88I	CYCGRG	1 cut(s)	129
EcoT14I	CCWWGG	1 cut(s)	144
EcoT38I	GRGCYC	1 cut(s)	64
ErhI	CCWWGG	1 cut(s)	144
FaiI	YATR	1 cut(s)	94
FaqI	GGGAC	1 cut(s)	70
FriOI	GRGCYC	1 cut(s)	64
FspBI	CTAG	1 cut(s)	65
HaeIII	GGCC	1 cut(s)	75
HinfI	GANTC	1 cut(s)	83
Hpy188I	TCNGA	1 cut(s)	43
Hpy99I	CGWCG	1 cut(s)	16
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	2 cut(s)	59, 115
HpyF3I	CTNAG	1 cut(s)	155
Kzo9I	GATC	1 cut(s)	148
MaeI	CTAG	1 cut(s)	65
MaeIII	GTNAC	1 cut(s)	29
MalI	GATC	1 cut(s)	150
MbiI	CCGCTC	1 cut(s)	134
MboI	GATC	1 cut(s)	148
MboII	GAAGA	2 cut(s)	92, 173
MhlI	GDGCHC	2 cut(s)	64, 120
MlyI	GAGTC	1 cut(s)	92
MnlI	CCTC	3 cut(s)	37, 40, 130
MwoI	GCNNNNNNNGC	2 cut(s)	59, 115
NdeII	GATC	1 cut(s)	148
NlaIV	GGNNCC	1 cut(s)	177
PleI	GAGTC	1 cut(s)	91
PpsI	GAGTC	1 cut(s)	91
PspN4I	GGNNCC	1 cut(s)	177
PspPI	GGNCC	1 cut(s)	175
Sau3AI	GATC	1 cut(s)	148
Sau96I	GGNCC	1 cut(s)	175
SchI	GAGTC	1 cut(s)	92
SduI	GDGCHC	2 cut(s)	64, 120
SetI	ASST	4 cut(s)	9, 29, 51, 55
SinI	GGWCC	1 cut(s)	175
SsiI	CCGC	1 cut(s)	134
SspMI	CTAG	1 cut(s)	65
StyI	CCWWGG	1 cut(s)	144
TaqI	TCGA	1 cut(s)	168
VpaK11BI	GGWCC	1 cut(s)	175
XspI	CTAG	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.