Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8222200.1

Orthogroup ID

OG0001366

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 404

Gene Structure 404 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8222200.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 404 bp

ccccatttccggtggcgggaaagaaactccggccgttatcctcacctgggtgtttcttgaattgcttcctcgtcgtctggctgtggtggttcaacggtcaccagcacatgatgatgtccgttgcgtcgccgagaaagtccataacggagaaagtgtttgagagggtgggaggggtttcttacctgagcagttatctcaagaacaacaacggtcataaccaccaccatcacagagaatttgagagcgacgacgatgaggggactatggagcttgtgcagattggtgctgagaggaccaagaacgttttgattctgatgagtgataccggcggcggacacagagcttccgcggaggcgatcaaggatgcgtttcgtttggagtttggagacgaatacagggtatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006643 GO:0006664 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008194 GO:0008378 GO:0009267 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009605 GO:0009707 GO:0009941 GO:0009987 GO:0009991 GO:0016020 GO:0016036 GO:0016740 GO:0016757 GO:0016758 GO:0019374 GO:0019752 GO:0019867 GO:0031090 GO:0031667 GO:0031668 GO:0031669 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032787 GO:0033554 GO:0035250 GO:0042170 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0071496 GO:0071704 GO:0098588 GO:0098805 GO:1901135 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00561 ko01100 map00561 map01100

Pfam Domains

Protein Families

Glyco_tran_28_C MGDG_synth

Protein Analysis

133

Amino Acids

15.1

Weight (kDa)

6.83

Isoelectric Point (pI)

33.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001366)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G11810 AT2G11810 AT2G11810 AT2G11810 AT5G20410
fragaria_vesca	FvH4_1g02220 FvH4_1g02220 FvH4_1g02220 FvH4_1g21680
malus_domestica	MD02G1020400.v1.1 MD15G1163200.v1.1
prunus_persica	Prupe.7G251400_v2.0.a1
pyrus_communis	pycom02g01790 pycom15g14680
rosa_chinensis	RchiOBHm_Chr2g0087331 RchiOBHm_Chr3g0481741 RchiOBHm_Chr4g0421821 RchiOBHm_Chr6g0246901
rosa_laevigata	RLG00000003836 RLG00000015857
rosa_multiflora	Rmu_co8187728.1_g000001 Rmu_co8222200.1_g000001 Rmu_sc0000540.1_g000032 Rmu_sc0003367.1_g000024 Rmu_sc0006064.1_g000001 Rmu_sc0007105.1_g000003 Rmu_sc0016592.1_g000001 Rmu_sc0037595.1_g000001
rosa_roxburghii	Rroxscaffold_1G00028410 Rroxscaffold_2G00111080 Rroxscaffold_2G00153680 Rroxscaffold_3G00242830 Rroxscaffold_4G00276430 Rroxscaffold_4G00300210 Rroxscaffold_7G00214190
rosa_rugosa	Rorug01G0474200
rosa_samantha	Rh1CG122800 Rh2AG027800 Rh2AG631400 Rh2BG027300 Rh2BG300600 Rh2CG028100 Rh2DG027900 Rh4BG234200 Rh5CG220000 Rh6BG190700 Rh6CG106700 Rh6CG108200 Rh6DG097200 Rh6DG098600 Rh7CG224800
rosa_wichuraiana	Rw1G013320 Rw2G002200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	349
AciI	CCGC	5 cut(s)	16, 329, 332, 347, 349
AclI	AACGTT	1 cut(s)	302
AcoI	YGGCCR	1 cut(s)	31
AcsI	RAATTY	1 cut(s)	235
AfiI	CCNNNNNNNGG	3 cut(s)	9, 16, 47
AgsI	TTSAA	2 cut(s)	60, 93
AjnI	CCWGG	1 cut(s)	45
AleI	CACNNNNGTG	1 cut(s)	48
AluBI	AGCT	2 cut(s)	270, 343
AluI	AGCT	2 cut(s)	270, 343
Alw26I	GTCTC	1 cut(s)	380
AoxI	GGCC	1 cut(s)	31
ApoI	RAATTY	1 cut(s)	235
Asp700I	GAANNNNTTC	1 cut(s)	64
AspS9I	GGNCC	1 cut(s)	293
AsuHPI	GGTGA	2 cut(s)	35, 91
AvaII	GGWCC	1 cut(s)	293
BccI	CCATC	1 cut(s)	233
BceAI	ACGGC	1 cut(s)	18
BciT130I	CCWGG	1 cut(s)	47
BcoDI	GTCTC	1 cut(s)	380
BisI	GCNGC	1 cut(s)	330
BlsI	GCNGC	1 cut(s)	331
Bme1390I	CCNGG	1 cut(s)	47
Bme18I	GGWCC	1 cut(s)	293
BmgT120I	GGNCC	1 cut(s)	293
BmrFI	CCNGG	1 cut(s)	47
BmsI	GCATC	1 cut(s)	354
Bpu10I	CCTNAGC	1 cut(s)	184
BpuEI	CTTGAG	1 cut(s)	181
BsaJI	CCNNGG	2 cut(s)	46, 347
BsaWI	WCCGGW	1 cut(s)	9
BsaXI	ACNNNNNCTCC	2 cut(s)	139, 169
Bsc4I	CCNNNNNNNGG	3 cut(s)	9, 16, 47
Bse118I	RCCGGY	1 cut(s)	325
BseBI	CCWGG	1 cut(s)	47
BseDI	CCNNGG	2 cut(s)	46, 347
BseGI	GGATG	1 cut(s)	369
BseLI	CCNNNNNNNGG	3 cut(s)	9, 16, 47
BseMII	CTCAG	2 cut(s)	175, 278
BseX3I	CGGCCG	1 cut(s)	31
BsgI	GTGCAG	1 cut(s)	295
Bsh1236I	CGCG	1 cut(s)	349
Bsh1285I	CGRYCG	1 cut(s)	34
BshFI	GGCC	1 cut(s)	33
BsiEI	CGRYCG	1 cut(s)	34
BsiSI	CCGG	3 cut(s)	10, 30, 326
BslFI	GGGAC	1 cut(s)	273
BslI	CCNNNNNNNGG	3 cut(s)	9, 16, 47
BsmAI	GTCTC	1 cut(s)	380
BsmBI	CGTCTC	1 cut(s)	380
BsmFI	GGGAC	1 cut(s)	273
BsnI	GGCC	1 cut(s)	33
Bsp143I	GATC	1 cut(s)	356
BspACI	CCGC	5 cut(s)	16, 329, 332, 347, 349
BspANI	GGCC	1 cut(s)	33
BspCNI	CTCAG	2 cut(s)	176, 279
BspFNI	CGCG	1 cut(s)	349
BsrFI	RCCGGY	1 cut(s)	325
BssAI	RCCGGY	1 cut(s)	325
BssECI	CCNNGG	2 cut(s)	46, 347
BssMI	GATC	1 cut(s)	356
Bst2UI	CCWGG	1 cut(s)	47
Bst4CI	ACNGT	2 cut(s)	97, 211
BstDEI	CTNAG	2 cut(s)	184, 287
BstDSI	CCRYGG	1 cut(s)	347
BstEII	GGTNACC	1 cut(s)	97
BstF5I	GGATG	1 cut(s)	369
BstFNI	CGCG	1 cut(s)	349
BstKTI	GATC	1 cut(s)	359
BstMAI	GTCTC	1 cut(s)	380
BstMBI	GATC	1 cut(s)	356
BstMCI	CGRYCG	1 cut(s)	34
BstNI	CCWGG	1 cut(s)	47
BstPI	GGTNACC	1 cut(s)	97
BstSCI	CCNGG	1 cut(s)	45
BstUI	CGCG	1 cut(s)	349
BstZI	CGGCCG	1 cut(s)	31
BsuRI	GGCC	1 cut(s)	33
BtgI	CCRYGG	1 cut(s)	347
BtsCI	GGATG	1 cut(s)	369
Cfr10I	RCCGGY	1 cut(s)	325
Cfr13I	GGNCC	1 cut(s)	293
Cfr42I	CCGCGG	1 cut(s)	350
CseI	GACGC	1 cut(s)	113
CviAII	CATG	1 cut(s)	108
CviJI	RGCY	4 cut(s)	33, 81, 270, 343
CviKI_1	RGCY	4 cut(s)	33, 81, 270, 343
DdeI	CTNAG	2 cut(s)	184, 287
DpnI	GATC	1 cut(s)	358
DpnII	GATC	1 cut(s)	356
EaeI	YGGCCR	1 cut(s)	31
EagI	CGGCCG	1 cut(s)	31
EciI	GGCGGA	1 cut(s)	347
EclXI	CGGCCG	1 cut(s)	31
Eco47I	GGWCC	1 cut(s)	293
Eco52I	CGGCCG	1 cut(s)	31
Eco91I	GGTNACC	1 cut(s)	97
EcoO65I	GGTNACC	1 cut(s)	97
EcoRII	CCWGG	1 cut(s)	45
Esp3I	CGTCTC	1 cut(s)	380
FaeI	CATG	1 cut(s)	111
FaiI	YATR	5 cut(s)	109, 142, 215, 265, 402
FaqI	GGGAC	1 cut(s)	273
FatI	CATG	1 cut(s)	107
FauI	CCCGC	1 cut(s)	9
Fnu4HI	GCNGC	1 cut(s)	330
FokI	GGATG	1 cut(s)	376
Fsp4HI	GCNGC	1 cut(s)	330
GluI	GCNGC	1 cut(s)	330
HaeIII	GGCC	1 cut(s)	33
HapII	CCGG	3 cut(s)	10, 30, 326
HgaI	GACGC	1 cut(s)	113
Hin1II	CATG	1 cut(s)	111
HinfI	GANTC	1 cut(s)	309
HpaII	CCGG	3 cut(s)	10, 30, 326
HphI	GGTGA	2 cut(s)	35, 91
Hpy188I	TCNGA	1 cut(s)	314
Hpy188III	TCNNGA	2 cut(s)	57, 198
Hpy99I	CGWCG	4 cut(s)	76, 129, 250, 253
HpyCH4III	ACNGT	2 cut(s)	97, 211
HpyCH4IV	ACGT	1 cut(s)	302
HpyCH4V	TGCA	1 cut(s)	276
HpyF3I	CTNAG	2 cut(s)	184, 287
HpySE526I	ACGT	1 cut(s)	302
Hsp92II	CATG	1 cut(s)	111
KspI	CCGCGG	1 cut(s)	350
Kzo9I	GATC	1 cut(s)	356
LmnI	GCTCC	1 cut(s)	267
LpnPI	CCDG	9 cut(s)	23, 32, 43, 59, 63, 115, 196, 339, 381
LweI	GCATC	1 cut(s)	354
MaeII	ACGT	1 cut(s)	302
MaeIII	GTNAC	1 cut(s)	97
MalI	GATC	1 cut(s)	358
MboI	GATC	1 cut(s)	356
MluCI	AATT	2 cut(s)	60, 235
MnlI	CCTC	7 cut(s)	51, 79, 155, 163, 249, 284, 345
MroXI	GAANNNNTTC	1 cut(s)	64
MslI	CAYNNNNRTG	2 cut(s)	48, 112
MspA1I	CMGCKG	1 cut(s)	349
MspI	CCGG	3 cut(s)	10, 30, 326
MspR9I	CCNGG	1 cut(s)	47
MvaI	CCWGG	1 cut(s)	47
MvnI	CGCG	1 cut(s)	349
NdeII	GATC	1 cut(s)	356
NlaIII	CATG	1 cut(s)	111
NmeAIII	GCCGAG	1 cut(s)	155
NmuCI	GTSAC	1 cut(s)	97
OliI	CACNNNNGTG	1 cut(s)	48
PdmI	GAANNNNTTC	1 cut(s)	64
PfeI	GAWTC	1 cut(s)	309
PkrI	GCNGC	1 cut(s)	331
Psp1406I	AACGTT	1 cut(s)	302
Psp6I	CCWGG	1 cut(s)	45
PspEI	GGTNACC	1 cut(s)	97
PspGI	CCWGG	1 cut(s)	45
PspPI	GGNCC	1 cut(s)	293
RseI	CAYNNNNRTG	2 cut(s)	48, 112
SacII	CCGCGG	1 cut(s)	350
SatI	GCNGC	1 cut(s)	330
Sau3AI	GATC	1 cut(s)	356
Sau96I	GGNCC	1 cut(s)	293
ScrFI	CCNGG	1 cut(s)	47
SetI	ASST	5 cut(s)	48, 185, 272, 305, 345
SfaNI	GCATC	1 cut(s)	354
Sfr303I	CCGCGG	1 cut(s)	350
SgrBI	CCGCGG	1 cut(s)	350
SinI	GGWCC	1 cut(s)	293
SmiMI	CAYNNNNRTG	2 cut(s)	48, 112
SmlI	CTYRAG	1 cut(s)	196
SmoI	CTYRAG	1 cut(s)	196
Sse9I	AATT	2 cut(s)	60, 235
SsiI	CCGC	5 cut(s)	16, 329, 332, 347, 349
StyD4I	CCNGG	1 cut(s)	45
TaaI	ACNGT	2 cut(s)	97, 211
TaiI	ACGT	1 cut(s)	305
TasI	AATT	2 cut(s)	60, 235
TauI	GCSGC	1 cut(s)	332
TfiI	GAWTC	1 cut(s)	309
TseFI	GTSAC	1 cut(s)	97
Tsp45I	GTSAC	1 cut(s)	97
TspGWI	ACGGA	2 cut(s)	108, 160
VpaK11BI	GGWCC	1 cut(s)	293
XapI	RAATTY	1 cut(s)	235
XmnI	GAANNNNTTC	1 cut(s)	64

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.