Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001366

Physical Location & Seq

Genomic Coordinates Reverse (-)

35609914 .. 35611232

Gene Structure 1319 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00111080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGGTGCTAGTGTTTTCACCGAAGCCCCAAGGAAACAGCCAGGATTGTGGCGAATGGTTCAGCACCAAGCCGGATAAGCTCAAAAGGATGTCCGAGAATGCACTTAAACTAGCACAACCGAAGGCTGTTTTCGACATTGTTAAGGACATTCATGACCTCGCCCGCCAACCAAAGGGAATAGACTATGAGAAAGCCATGGCTGCCATGATATCTCGTTTTTGCCAGCGGTATTCAATGAGCTTCCCGACGAGTTTGGGTCTTAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006643 GO:0006664 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008194 GO:0008378 GO:0009267 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009605 GO:0009707 GO:0009941 GO:0009987 GO:0009991 GO:0016020 GO:0016036 GO:0016740 GO:0016757 GO:0016758 GO:0019374 GO:0019752 GO:0019867 GO:0031090 GO:0031667 GO:0031668 GO:0031669 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032787 GO:0033554 GO:0035250 GO:0042170 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0071496 GO:0071704 GO:0098588 GO:0098805 GO:1901135 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00561 ko01100 map00561 map01100

Pfam Domains

Protein Families

Glyco_tran_28_C MGDG_synth

Protein Analysis

88

Amino Acids

10.0

Weight (kDa)

9.47

Isoelectric Point (pI)

37.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001366)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G11810 AT2G11810 AT2G11810 AT2G11810 AT5G20410
fragaria_vesca	FvH4_1g02220 FvH4_1g02220 FvH4_1g02220 FvH4_1g21680
malus_domestica	MD02G1020400.v1.1 MD15G1163200.v1.1
prunus_persica	Prupe.7G251400_v2.0.a1
pyrus_communis	pycom02g01790 pycom15g14680
rosa_chinensis	RchiOBHm_Chr2g0087331 RchiOBHm_Chr3g0481741 RchiOBHm_Chr4g0421821 RchiOBHm_Chr6g0246901
rosa_laevigata	RLG00000003836 RLG00000015857
rosa_multiflora	Rmu_co8187728.1_g000001 Rmu_co8222200.1_g000001 Rmu_sc0000540.1_g000032 Rmu_sc0003367.1_g000024 Rmu_sc0006064.1_g000001 Rmu_sc0007105.1_g000003 Rmu_sc0016592.1_g000001 Rmu_sc0037595.1_g000001
rosa_roxburghii	Rroxscaffold_1G00028410 Rroxscaffold_2G00111080 Rroxscaffold_2G00153680 Rroxscaffold_3G00242830 Rroxscaffold_4G00276430 Rroxscaffold_4G00300210 Rroxscaffold_7G00214190
rosa_rugosa	Rorug01G0474200
rosa_samantha	Rh1CG122800 Rh2AG027800 Rh2AG631400 Rh2BG027300 Rh2BG300600 Rh2CG028100 Rh2DG027900 Rh4BG234200 Rh5CG220000 Rh6BG190700 Rh6CG106700 Rh6CG108200 Rh6DG097200 Rh6DG098600 Rh7CG224800
rosa_wichuraiana	Rw1G013320 Rw2G002200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	163, 226
AfiI	CCNNNNNNNGG	1 cut(s)	172
AgsI	TTSAA	1 cut(s)	234
AjnI	CCWGG	1 cut(s)	39
AluBI	AGCT	2 cut(s)	79, 240
AluI	AGCT	2 cut(s)	79, 240
ApeKI	GCWGC	1 cut(s)	200
AsuHPI	GGTGA	1 cut(s)	9
BbvI	GCAGC	1 cut(s)	187
BciT130I	CCWGG	1 cut(s)	41
BfaI	CTAG	2 cut(s)	8, 110
BisI	GCNGC	1 cut(s)	201
BlsI	GCNGC	1 cut(s)	202
Bme1390I	CCNGG	1 cut(s)	41
BmrFI	CCNGG	1 cut(s)	41
BsaJI	CCNNGG	2 cut(s)	28, 195
Bsc4I	CCNNNNNNNGG	1 cut(s)	172
BseBI	CCWGG	1 cut(s)	41
BseDI	CCNNGG	2 cut(s)	28, 195
BseGI	GGATG	1 cut(s)	93
BseLI	CCNNNNNNNGG	1 cut(s)	172
BseXI	GCAGC	1 cut(s)	187
BsiSI	CCGG	1 cut(s)	71
BslI	CCNNNNNNNGG	1 cut(s)	172
BsmI	GAATGC	1 cut(s)	103
Bsp19I	CCATGG	1 cut(s)	195
BspACI	CCGC	2 cut(s)	163, 226
BspHI	TCATGA	1 cut(s)	151
BssECI	CCNNGG	2 cut(s)	28, 195
BssT1I	CCWWGG	2 cut(s)	28, 195
Bst2UI	CCWGG	1 cut(s)	41
BstC8I	GCNNGC	2 cut(s)	163, 224
BstDEI	CTNAG	1 cut(s)	260
BstDSI	CCRYGG	1 cut(s)	195
BstF5I	GGATG	1 cut(s)	93
BstMWI	GCNNNNNNNGC	2 cut(s)	76, 200
BstNI	CCWGG	1 cut(s)	41
BstSCI	CCNGG	1 cut(s)	39
BstV1I	GCAGC	1 cut(s)	187
BstXI	CCANNNNNNTGG	1 cut(s)	47
BtgI	CCRYGG	1 cut(s)	195
BtsCI	GGATG	1 cut(s)	93
Cac8I	GCNNGC	2 cut(s)	163, 224
CciI	TCATGA	1 cut(s)	151
CviAII	CATG	3 cut(s)	152, 196, 205
CviJI	RGCY	8 cut(s)	25, 39, 70, 79, 125, 194, 200, 240
CviKI_1	RGCY	8 cut(s)	25, 39, 70, 79, 125, 194, 200, 240
DdeI	CTNAG	1 cut(s)	260
Eco130I	CCWWGG	2 cut(s)	28, 195
Eco32I	GATATC	1 cut(s)	210
EcoRII	CCWGG	1 cut(s)	39
EcoRV	GATATC	1 cut(s)	210
EcoT14I	CCWWGG	2 cut(s)	28, 195
ErhI	CCWWGG	2 cut(s)	28, 195
FaeI	CATG	3 cut(s)	155, 199, 208
FaiI	YATR	4 cut(s)	153, 186, 197, 206
FatI	CATG	3 cut(s)	151, 195, 204
FauI	CCCGC	1 cut(s)	170
Fnu4HI	GCNGC	1 cut(s)	201
FokI	GGATG	1 cut(s)	100
Fsp4HI	GCNGC	1 cut(s)	201
FspBI	CTAG	2 cut(s)	8, 110
GluI	GCNGC	1 cut(s)	201
HapII	CCGG	1 cut(s)	71
Hin1II	CATG	3 cut(s)	155, 199, 208
HpaII	CCGG	1 cut(s)	71
HphI	GGTGA	1 cut(s)	9
Hpy188I	TCNGA	1 cut(s)	94
Hpy188III	TCNNGA	2 cut(s)	152, 244
Hpy99I	CGWCG	1 cut(s)	250
HpyAV	CCTTC	1 cut(s)	115
HpyCH4V	TGCA	1 cut(s)	101
HpyF10VI	GCNNNNNNNGC	2 cut(s)	76, 200
HpyF3I	CTNAG	1 cut(s)	260
Hsp92II	CATG	3 cut(s)	155, 199, 208
LpnPI	CCDG	4 cut(s)	26, 53, 84, 236
Lsp1109I	GCAGC	1 cut(s)	187
MaeI	CTAG	2 cut(s)	8, 110
MnlI	CCTC	1 cut(s)	167
MseI	TTAA	2 cut(s)	105, 141
MspA1I	CMGCKG	1 cut(s)	226
MspI	CCGG	1 cut(s)	71
MspR9I	CCNGG	1 cut(s)	41
Mva1269I	GAATGC	1 cut(s)	103
MvaI	CCWGG	1 cut(s)	41
MwoI	GCNNNNNNNGC	2 cut(s)	76, 200
NcoI	CCATGG	1 cut(s)	195
NlaIII	CATG	3 cut(s)	155, 199, 208
PagI	TCATGA	1 cut(s)	151
PctI	GAATGC	1 cut(s)	103
PkrI	GCNGC	1 cut(s)	202
Psp6I	CCWGG	1 cut(s)	39
PspGI	CCWGG	1 cut(s)	39
SaqAI	TTAA	2 cut(s)	105, 141
SatI	GCNGC	1 cut(s)	201
ScrFI	CCNGG	1 cut(s)	41
SetI	ASST	4 cut(s)	81, 159, 242, 266
SsiI	CCGC	2 cut(s)	163, 226
SspMI	CTAG	2 cut(s)	8, 110
StyD4I	CCNGG	1 cut(s)	39
StyI	CCWWGG	2 cut(s)	28, 195
TaqI	TCGA	1 cut(s)	132
Tru1I	TTAA	2 cut(s)	105, 141
Tru9I	TTAA	2 cut(s)	105, 141
TseI	GCWGC	1 cut(s)	200
TspDTI	ATGAA	1 cut(s)	140
XspI	CTAG	2 cut(s)	8, 110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.