Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0037595.1

Orthogroup ID

OG0001366

Physical Location & Seq

Genomic Coordinates Reverse (-)

403 .. 630

Gene Structure 228 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0037595.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 228 bp

atgatgttgtccgttgtgtcaccgagaaagtccataacagagaaagtgtttgagagggtcgaaggggtttcttacctgagcagttatctcaagaacaacaacggtcataaccaccaccatcacagaaaagtggagagtgacggcgatgaggggactatggagcttgtgcagattggtgctgaaaggaccaagaacgttttgattctgataagtgataccggcggctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006643 GO:0006664 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008194 GO:0008378 GO:0009267 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009605 GO:0009707 GO:0009941 GO:0009987 GO:0009991 GO:0016020 GO:0016036 GO:0016740 GO:0016757 GO:0016758 GO:0019374 GO:0019752 GO:0019867 GO:0031090 GO:0031667 GO:0031668 GO:0031669 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032787 GO:0033554 GO:0035250 GO:0042170 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0071496 GO:0071704 GO:0098588 GO:0098805 GO:1901135 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00561 ko01100 map00561 map01100

Pfam Domains

Protein Families

Glyco_tran_28_C MGDG_synth

Protein Analysis

75

Amino Acids

8.38

Weight (kDa)

6.5

Isoelectric Point (pI)

18.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001366)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G11810 AT2G11810 AT2G11810 AT2G11810 AT5G20410
fragaria_vesca	FvH4_1g02220 FvH4_1g02220 FvH4_1g02220 FvH4_1g21680
malus_domestica	MD02G1020400.v1.1 MD15G1163200.v1.1
prunus_persica	Prupe.7G251400_v2.0.a1
pyrus_communis	pycom02g01790 pycom15g14680
rosa_chinensis	RchiOBHm_Chr2g0087331 RchiOBHm_Chr3g0481741 RchiOBHm_Chr4g0421821 RchiOBHm_Chr6g0246901
rosa_laevigata	RLG00000003836 RLG00000015857
rosa_multiflora	Rmu_co8187728.1_g000001 Rmu_co8222200.1_g000001 Rmu_sc0000540.1_g000032 Rmu_sc0003367.1_g000024 Rmu_sc0006064.1_g000001 Rmu_sc0007105.1_g000003 Rmu_sc0016592.1_g000001 Rmu_sc0037595.1_g000001
rosa_roxburghii	Rroxscaffold_1G00028410 Rroxscaffold_2G00111080 Rroxscaffold_2G00153680 Rroxscaffold_3G00242830 Rroxscaffold_4G00276430 Rroxscaffold_4G00300210 Rroxscaffold_7G00214190
rosa_rugosa	Rorug01G0474200
rosa_samantha	Rh1CG122800 Rh2AG027800 Rh2AG631400 Rh2BG027300 Rh2BG300600 Rh2CG028100 Rh2DG027900 Rh4BG234200 Rh5CG220000 Rh6BG190700 Rh6CG106700 Rh6CG108200 Rh6DG097200 Rh6DG098600 Rh7CG224800
rosa_wichuraiana	Rw1G013320 Rw2G002200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	222
AclI	AACGTT	1 cut(s)	195
AluBI	AGCT	1 cut(s)	163
AluI	AGCT	1 cut(s)	163
AspS9I	GGNCC	1 cut(s)	186
AsuHPI	GGTGA	1 cut(s)	12
AvaII	GGWCC	1 cut(s)	186
BccI	CCATC	1 cut(s)	126
BceAI	ACGGC	1 cut(s)	157
BisI	GCNGC	1 cut(s)	223
BlsI	GCNGC	1 cut(s)	224
Bme18I	GGWCC	1 cut(s)	186
BmgT120I	GGNCC	1 cut(s)	186
Bpu10I	CCTNAGC	1 cut(s)	77
BpuEI	CTTGAG	1 cut(s)	74
Bse118I	RCCGGY	1 cut(s)	218
BseMII	CTCAG	1 cut(s)	68
BsgI	GTGCAG	1 cut(s)	188
BsiSI	CCGG	1 cut(s)	219
BslFI	GGGAC	1 cut(s)	166
BsmFI	GGGAC	1 cut(s)	166
BspACI	CCGC	1 cut(s)	222
BspCNI	CTCAG	1 cut(s)	69
BsrFI	RCCGGY	1 cut(s)	218
BssAI	RCCGGY	1 cut(s)	218
Bst4CI	ACNGT	1 cut(s)	104
BstDEI	CTNAG	1 cut(s)	77
BtgZI	GCGATG	1 cut(s)	159
Cfr10I	RCCGGY	1 cut(s)	218
Cfr13I	GGNCC	1 cut(s)	186
CviJI	RGCY	2 cut(s)	163, 225
CviKI_1	RGCY	2 cut(s)	163, 225
DdeI	CTNAG	1 cut(s)	77
Eco47I	GGWCC	1 cut(s)	186
FaiI	YATR	3 cut(s)	35, 108, 158
FaqI	GGGAC	1 cut(s)	166
Fnu4HI	GCNGC	1 cut(s)	223
Fsp4HI	GCNGC	1 cut(s)	223
GluI	GCNGC	1 cut(s)	223
HapII	CCGG	1 cut(s)	219
HinfI	GANTC	1 cut(s)	202
HpaII	CCGG	1 cut(s)	219
HphI	GGTGA	1 cut(s)	12
Hpy188I	TCNGA	1 cut(s)	207
Hpy188III	TCNNGA	1 cut(s)	91
HpyAV	CCTTC	1 cut(s)	56
HpyCH4III	ACNGT	1 cut(s)	104
HpyCH4IV	ACGT	1 cut(s)	195
HpyCH4V	TGCA	1 cut(s)	169
HpyF3I	CTNAG	1 cut(s)	77
HpySE526I	ACGT	1 cut(s)	195
LmnI	GCTCC	1 cut(s)	160
LpnPI	CCDG	1 cut(s)	89
MaeII	ACGT	1 cut(s)	195
MaeIII	GTNAC	2 cut(s)	18, 137
MnlI	CCTC	2 cut(s)	48, 142
MspI	CCGG	1 cut(s)	219
NmuCI	GTSAC	2 cut(s)	18, 137
PfeI	GAWTC	1 cut(s)	202
PkrI	GCNGC	1 cut(s)	224
Psp1406I	AACGTT	1 cut(s)	195
PspPI	GGNCC	1 cut(s)	186
SatI	GCNGC	1 cut(s)	223
Sau96I	GGNCC	1 cut(s)	186
SetI	ASST	3 cut(s)	78, 165, 198
SgeI	CNNG	5 cut(s)	36, 88, 103, 176, 202
SinI	GGWCC	1 cut(s)	186
SmlI	CTYRAG	1 cut(s)	89
SmoI	CTYRAG	1 cut(s)	89
SsiI	CCGC	1 cut(s)	222
TaaI	ACNGT	1 cut(s)	104
TaiI	ACGT	1 cut(s)	198
TaqI	TCGA	1 cut(s)	60
TauI	GCSGC	1 cut(s)	225
TfiI	GAWTC	1 cut(s)	202
TseFI	GTSAC	2 cut(s)	18, 137
Tsp45I	GTSAC	2 cut(s)	18, 137
VpaK11BI	GGWCC	1 cut(s)	186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.