Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001366

Physical Location & Seq

Genomic Coordinates Forward (+)

53318720 .. 53320447

Gene Structure 1728 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003836

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGCGTTTCGTTTGGAGACGAATACAGGGTATGATTCTAAATTGGGTTTTGGATTACACATCTGGGTTTTTAATTTGCTTTTGTGTCTTTTCTGAGGTATTTGTGAAGGATGTGTGGAAAGAATACACAGGTTGGCCTTTAAATAATATGGAGAGGTCTTACAAGTTCATGGTGAAACATGTTCAGCTATGGAAGGTTGCATTTCACAGTACTTCTCCTAGATGGATCCACAGTGTCTATCTTGCTGCCATTGCAGCCTACTATGCCAAGGAGGTGGAGGCTGGTTTCATCCGGGGGTCAATAGGTGTTACTGCACGGGAGGAGGTAGCTAAAAGAGCTCTAGTATATGGCCTTGAAGAGTCCCAAATACGTATTTTTGGCTTGCCCATCAGGCCCTCTTTTGCCCGAGCGGTTATCTCCAAGGATCAACTCATTATTTGTGGCCGCAATAAAAACCTTGTCTCCACGCTTGAATCTAATGAGTGGAACATCCCAGTCAAGGTTAGAGGATTTGAGACACAAATGGAGAAATGGATGGGATCTTGTGACTGCATCATAACAAAAGTAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006643 GO:0006664 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008194 GO:0008378 GO:0009267 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009605 GO:0009707 GO:0009941 GO:0009987 GO:0009991 GO:0016020 GO:0016036 GO:0016740 GO:0016757 GO:0016758 GO:0019374 GO:0019752 GO:0019867 GO:0031090 GO:0031667 GO:0031668 GO:0031669 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032787 GO:0033554 GO:0035250 GO:0042170 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0071496 GO:0071704 GO:0098588 GO:0098805 GO:1901135 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00561 ko01100 map00561 map01100

Pfam Domains

Protein Families

Glyco_tran_28_C MGDG_synth

Protein Analysis

191

Amino Acids

22.1

Weight (kDa)

9.35

Isoelectric Point (pI)

38.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MGDG_synth	PF06925	31 - 94	1.9e-13	Monogalactosyldiacylglycerol (MGDG) synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001366)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G11810 AT2G11810 AT2G11810 AT2G11810 AT5G20410
fragaria_vesca	FvH4_1g02220 FvH4_1g02220 FvH4_1g02220 FvH4_1g21680
malus_domestica	MD02G1020400.v1.1 MD15G1163200.v1.1
prunus_persica	Prupe.7G251400_v2.0.a1
pyrus_communis	pycom02g01790 pycom15g14680
rosa_chinensis	RchiOBHm_Chr2g0087331 RchiOBHm_Chr3g0481741 RchiOBHm_Chr4g0421821 RchiOBHm_Chr6g0246901
rosa_laevigata	RLG00000003836 RLG00000015857
rosa_multiflora	Rmu_co8187728.1_g000001 Rmu_co8222200.1_g000001 Rmu_sc0000540.1_g000032 Rmu_sc0003367.1_g000024 Rmu_sc0006064.1_g000001 Rmu_sc0007105.1_g000003 Rmu_sc0016592.1_g000001 Rmu_sc0037595.1_g000001
rosa_roxburghii	Rroxscaffold_1G00028410 Rroxscaffold_2G00111080 Rroxscaffold_2G00153680 Rroxscaffold_3G00242830 Rroxscaffold_4G00276430 Rroxscaffold_4G00300210 Rroxscaffold_7G00214190
rosa_rugosa	Rorug01G0474200
rosa_samantha	Rh1CG122800 Rh2AG027800 Rh2AG631400 Rh2BG027300 Rh2BG300600 Rh2CG028100 Rh2DG027900 Rh4BG234200 Rh5CG220000 Rh6BG190700 Rh6CG106700 Rh6CG108200 Rh6DG097200 Rh6DG098600 Rh7CG224800
rosa_wichuraiana	Rw1G013320 Rw2G002200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	410
AciI	CCGC	2 cut(s)	410, 445
AclWI	GGATC	4 cut(s)	220, 233, 432, 547
AcoI	YGGCCR	1 cut(s)	442
AfaI	GTAC	1 cut(s)	211
AfiI	CCNNNNNNNGG	1 cut(s)	499
AflIII	ACRYGT	1 cut(s)	178
AgsI	TTSAA	2 cut(s)	356, 473
AluBI	AGCT	3 cut(s)	187, 329, 338
AluI	AGCT	3 cut(s)	187, 329, 338
Alw21I	GWGCWC	1 cut(s)	340
Alw26I	GTCTC	3 cut(s)	10, 466, 509
AlwI	GGATC	4 cut(s)	220, 233, 432, 547
Ama87I	CYCGRG	1 cut(s)	405
AoxI	GGCC	4 cut(s)	134, 349, 392, 442
ApeKI	GCWGC	2 cut(s)	245, 254
AspS9I	GGNCC	1 cut(s)	393
AsuC2I	CCSGG	1 cut(s)	293
AsuHPI	GGTGA	1 cut(s)	184
AvaI	CYCGRG	1 cut(s)	405
BamHI	GGATCC	1 cut(s)	225
BanII	GRGCYC	1 cut(s)	340
Bbv12I	GWGCWC	1 cut(s)	340
BbvI	GCAGC	2 cut(s)	232, 266
BccI	CCATC	3 cut(s)	216, 395, 529
BcnI	CCSGG	1 cut(s)	293
BcoDI	GTCTC	3 cut(s)	10, 466, 509
BfaI	CTAG	2 cut(s)	219, 341
BglI	GCCNNNNNGGC	1 cut(s)	391
BisI	GCNGC	3 cut(s)	246, 255, 445
BlsI	GCNGC	3 cut(s)	247, 256, 446
BmcAI	AGTACT	1 cut(s)	211
Bme1390I	CCNGG	1 cut(s)	293
BmeT110I	CYCGRG	1 cut(s)	405
BmgT120I	GGNCC	1 cut(s)	393
BmiI	GGNNCC	1 cut(s)	227
BmrFI	CCNGG	1 cut(s)	293
BmrI	ACTGGG	1 cut(s)	488
BmsI	GCATC	1 cut(s)	561
BmuI	ACTGGG	1 cut(s)	488
BpuMI	CCSGG	1 cut(s)	293
BsaAI	YACGTR	1 cut(s)	371
BsaJI	CCNNGG	3 cut(s)	267, 292, 420
BsaXI	ACNNNNNCTCC	2 cut(s)	446, 476
Bsc4I	CCNNNNNNNGG	1 cut(s)	499
Bse1I	ACTGG	1 cut(s)	494
Bse3DI	GCAATG	1 cut(s)	249
BseDI	CCNNGG	3 cut(s)	267, 292, 420
BseGI	GGATG	4 cut(s)	115, 288, 489, 540
BseLI	CCNNNNNNNGG	1 cut(s)	499
BseMI	GCAATG	1 cut(s)	249
BseMII	CTCAG	1 cut(s)	84
BseNI	ACTGG	1 cut(s)	494
BseRI	GAGGAG	1 cut(s)	335
BseXI	GCAGC	2 cut(s)	232, 266
BsgI	GTGCAG	1 cut(s)	297
BshFI	GGCC	4 cut(s)	136, 351, 394, 444
BsiHKAI	GWGCWC	1 cut(s)	340
BsiHKCI	CYCGRG	1 cut(s)	405
BsiSI	CCGG	1 cut(s)	292
BslFI	GGGAC	1 cut(s)	346
BslI	CCNNNNNNNGG	1 cut(s)	499
BsmAI	GTCTC	3 cut(s)	10, 466, 509
BsmBI	CGTCTC	1 cut(s)	10
BsmFI	GGGAC	1 cut(s)	346
BsnI	GGCC	4 cut(s)	136, 351, 394, 444
BsoBI	CYCGRG	1 cut(s)	405
Bsp1286I	GDGCHC	1 cut(s)	340
Bsp143I	GATC	3 cut(s)	225, 424, 539
BspACI	CCGC	2 cut(s)	410, 445
BspANI	GGCC	4 cut(s)	136, 351, 394, 444
BspCNI	CTCAG	1 cut(s)	85
BspLI	GGNNCC	1 cut(s)	227
BspPI	GGATC	4 cut(s)	220, 233, 432, 547
BsrBI	CCGCTC	1 cut(s)	410
BsrDI	GCAATG	1 cut(s)	249
BsrI	ACTGG	1 cut(s)	494
BssECI	CCNNGG	3 cut(s)	267, 292, 420
BssMI	GATC	3 cut(s)	225, 424, 539
BssT1I	CCWWGG	2 cut(s)	267, 420
Bst4CI	ACNGT	2 cut(s)	209, 233
Bst6I	CTCTTC	1 cut(s)	351
BstBAI	YACGTR	1 cut(s)	371
BstC8I	GCNNGC	1 cut(s)	383
BstDEI	CTNAG	1 cut(s)	93
BstF5I	GGATG	4 cut(s)	115, 288, 489, 540
BstKTI	GATC	3 cut(s)	228, 427, 542
BstMAI	GTCTC	3 cut(s)	10, 466, 509
BstMBI	GATC	3 cut(s)	225, 424, 539
BstMWI	GCNNNNNNNGC	5 cut(s)	251, 254, 263, 335, 391
BstNSI	RCATGY	1 cut(s)	182
BstSCI	CCNGG	1 cut(s)	291
BstSNI	TACGTA	1 cut(s)	371
BstV1I	GCAGC	2 cut(s)	232, 266
BstX2I	RGATCY	2 cut(s)	225, 539
BstXI	CCANNNNNNTGG	1 cut(s)	274
BstYI	RGATCY	2 cut(s)	225, 539
BsuRI	GGCC	4 cut(s)	136, 351, 394, 444
BtsCI	GGATG	4 cut(s)	115, 288, 489, 540
BtsIMutI	CAGTG	1 cut(s)	238
Cac8I	GCNNGC	1 cut(s)	383
Cfr13I	GGNCC	1 cut(s)	393
Csp6I	GTAC	1 cut(s)	210
CviAII	CATG	2 cut(s)	169, 179
CviQI	GTAC	1 cut(s)	210
DdeI	CTNAG	1 cut(s)	93
DpnI	GATC	3 cut(s)	227, 426, 541
DpnII	GATC	3 cut(s)	225, 424, 539
DraI	TTTAAA	1 cut(s)	141
EaeI	YGGCCR	1 cut(s)	442
Eam1104I	CTCTTC	1 cut(s)	351
EarI	CTCTTC	1 cut(s)	351
Ecl136II	GAGCTC	1 cut(s)	338
Eco105I	TACGTA	1 cut(s)	371
Eco130I	CCWWGG	2 cut(s)	267, 420
Eco24I	GRGCYC	1 cut(s)	340
Eco53kI	GAGCTC	1 cut(s)	338
Eco88I	CYCGRG	1 cut(s)	405
EcoICRI	GAGCTC	1 cut(s)	338
EcoO109I	RGGNCCY	1 cut(s)	393
EcoT14I	CCWWGG	2 cut(s)	267, 420
EcoT38I	GRGCYC	1 cut(s)	340
ErhI	CCWWGG	2 cut(s)	267, 420
Esp3I	CGTCTC	1 cut(s)	10
FaeI	CATG	2 cut(s)	172, 182
FaiI	YATR	9 cut(s)	32, 149, 170, 180, 190, 264, 346, 348, 557
FaqI	GGGAC	1 cut(s)	346
FatI	CATG	2 cut(s)	168, 178
Fnu4HI	GCNGC	3 cut(s)	246, 255, 445
FokI	GGATG	4 cut(s)	122, 275, 476, 547
FriOI	GRGCYC	1 cut(s)	340
Fsp4HI	GCNGC	3 cut(s)	246, 255, 445
FspBI	CTAG	2 cut(s)	219, 341
GluI	GCNGC	3 cut(s)	246, 255, 445
HaeIII	GGCC	4 cut(s)	136, 351, 394, 444
HapII	CCGG	1 cut(s)	292
Hin1II	CATG	2 cut(s)	172, 182
HinfI	GANTC	3 cut(s)	34, 359, 473
HpaII	CCGG	1 cut(s)	292
HphI	GGTGA	1 cut(s)	184
Hpy188I	TCNGA	1 cut(s)	94
HpyAV	CCTTC	2 cut(s)	100, 187
HpyCH4III	ACNGT	2 cut(s)	209, 233
HpyCH4IV	ACGT	1 cut(s)	370
HpyCH4V	TGCA	4 cut(s)	200, 254, 314, 552
HpyF10VI	GCNNNNNNNGC	5 cut(s)	251, 254, 263, 335, 391
HpyF3I	CTNAG	1 cut(s)	93
HpySE526I	ACGT	1 cut(s)	370
Hsp92II	CATG	2 cut(s)	172, 182
Kzo9I	GATC	3 cut(s)	225, 424, 539
LpnPI	CCDG	7 cut(s)	11, 48, 114, 267, 305, 376, 507
Lsp1109I	GCAGC	2 cut(s)	232, 266
LweI	GCATC	1 cut(s)	561
MaeI	CTAG	2 cut(s)	219, 341
MaeII	ACGT	1 cut(s)	370
MaeIII	GTNAC	2 cut(s)	307, 545
MalI	GATC	3 cut(s)	227, 426, 541
MbiI	CCGCTC	1 cut(s)	410
MboI	GATC	3 cut(s)	225, 424, 539
MboII	GAAGA	1 cut(s)	368
MflI	RGATCY	2 cut(s)	225, 539
MhlI	GDGCHC	1 cut(s)	340
MluCI	AATT	3 cut(s)	40, 72, 568
MlyI	GAGTC	1 cut(s)	368
MnlI	CCTC	8 cut(s)	88, 147, 265, 271, 313, 316, 406, 500
MseI	TTAA	2 cut(s)	71, 140
MspI	CCGG	1 cut(s)	292
MspR9I	CCNGG	1 cut(s)	293
MwoI	GCNNNNNNNGC	5 cut(s)	251, 254, 263, 335, 391
NciI	CCSGG	1 cut(s)	293
NdeII	GATC	3 cut(s)	225, 424, 539
NlaIII	CATG	2 cut(s)	172, 182
NlaIV	GGNNCC	1 cut(s)	227
NmuCI	GTSAC	1 cut(s)	545
NspI	RCATGY	1 cut(s)	182
PciI	ACATGT	1 cut(s)	178
PfeI	GAWTC	2 cut(s)	34, 473
PkrI	GCNGC	3 cut(s)	247, 256, 446
PleI	GAGTC	1 cut(s)	367
PpsI	GAGTC	1 cut(s)	367
Ppu21I	YACGTR	1 cut(s)	371
PscI	ACATGT	1 cut(s)	178
Psp124BI	GAGCTC	1 cut(s)	340
PspN4I	GGNNCC	1 cut(s)	227
PspPI	GGNCC	1 cut(s)	393
PsuI	RGATCY	2 cut(s)	225, 539
RsaI	GTAC	1 cut(s)	211
RsaNI	GTAC	1 cut(s)	210
SacI	GAGCTC	1 cut(s)	340
SaqAI	TTAA	2 cut(s)	71, 140
SatI	GCNGC	3 cut(s)	246, 255, 445
Sau3AI	GATC	3 cut(s)	225, 424, 539
Sau96I	GGNCC	1 cut(s)	393
ScaI	AGTACT	1 cut(s)	211
SchI	GAGTC	1 cut(s)	368
ScrFI	CCNGG	1 cut(s)	293
SduI	GDGCHC	1 cut(s)	340
SfaNI	GCATC	1 cut(s)	561
SnaBI	TACGTA	1 cut(s)	371
Sse9I	AATT	3 cut(s)	40, 72, 568
SsiI	CCGC	2 cut(s)	410, 445
SspMI	CTAG	2 cut(s)	219, 341
SstI	GAGCTC	1 cut(s)	340
StyD4I	CCNGG	1 cut(s)	291
StyI	CCWWGG	2 cut(s)	267, 420
TaaI	ACNGT	2 cut(s)	209, 233
TaiI	ACGT	1 cut(s)	373
TasI	AATT	3 cut(s)	40, 72, 568
TatI	WGTACW	1 cut(s)	209
TauI	GCSGC	1 cut(s)	447
TfiI	GAWTC	2 cut(s)	34, 473
Tru1I	TTAA	2 cut(s)	71, 140
Tru9I	TTAA	2 cut(s)	71, 140
TscAI	CASTG	1 cut(s)	238
TseFI	GTSAC	1 cut(s)	545
TseI	GCWGC	2 cut(s)	245, 254
Tsp45I	GTSAC	1 cut(s)	545
TspDTI	ATGAA	2 cut(s)	157, 277
TspRI	CASTG	1 cut(s)	238
XceI	RCATGY	1 cut(s)	182
XspI	CTAG	2 cut(s)	219, 341
ZrmI	AGTACT	1 cut(s)	211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.