Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0001366

Physical Location & Seq

Genomic Coordinates Reverse (-)

35441979 .. 35445925

Gene Structure 3947 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG190700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGTTCAGCCGCTTTTCGCTTTCAATGGAGGTGGAGGCTGGTCTAATGGAGTACAAGCCGTACATCATAATTAGTGTTCATCCTTTGATGCAACATATTCCTCTTTGGGTTCTCAAATGGCAAGGACTTCAGAAGAAAGTGATTTCTGTGACAGTGATTACTGATCTCAACATTTGCCATCCTACACGGTTTCATCCGGGGGTCAATAGGTGTTACTGCCCATCAGAGGAGGTAGCTAAAAGAGCTCTAGTCTATGGCCTTGAAGAGTCCCAAATACGTGTTTTTGGCTTGCCCATCAGGCCCTCTTTTGCCCGAGCGGTTATCTCCAAGGATCAACTCAAAGGAGAACTCGAAATGGACCCTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006643 GO:0006664 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008194 GO:0008378 GO:0009267 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009605 GO:0009707 GO:0009941 GO:0009987 GO:0009991 GO:0016020 GO:0016036 GO:0016740 GO:0016757 GO:0016758 GO:0019374 GO:0019752 GO:0019867 GO:0031090 GO:0031667 GO:0031668 GO:0031669 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032787 GO:0033554 GO:0035250 GO:0042170 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0071496 GO:0071704 GO:0098588 GO:0098805 GO:1901135 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00561 ko01100 map00561 map01100

Pfam Domains

Protein Families

Glyco_tran_28_C MGDG_synth

Protein Analysis

122

Amino Acids

14.03

Weight (kDa)

7.75

Isoelectric Point (pI)

39.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MGDG_synth	PF06925	8 - 99	2.3e-32	Monogalactosyldiacylglycerol (MGDG) synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001366)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G11810 AT2G11810 AT2G11810 AT2G11810 AT5G20410
fragaria_vesca	FvH4_1g02220 FvH4_1g02220 FvH4_1g02220 FvH4_1g21680
malus_domestica	MD02G1020400.v1.1 MD15G1163200.v1.1
prunus_persica	Prupe.7G251400_v2.0.a1
pyrus_communis	pycom02g01790 pycom15g14680
rosa_chinensis	RchiOBHm_Chr2g0087331 RchiOBHm_Chr3g0481741 RchiOBHm_Chr4g0421821 RchiOBHm_Chr6g0246901
rosa_laevigata	RLG00000003836 RLG00000015857
rosa_multiflora	Rmu_co8187728.1_g000001 Rmu_co8222200.1_g000001 Rmu_sc0000540.1_g000032 Rmu_sc0003367.1_g000024 Rmu_sc0006064.1_g000001 Rmu_sc0007105.1_g000003 Rmu_sc0016592.1_g000001 Rmu_sc0037595.1_g000001
rosa_roxburghii	Rroxscaffold_1G00028410 Rroxscaffold_2G00111080 Rroxscaffold_2G00153680 Rroxscaffold_3G00242830 Rroxscaffold_4G00276430 Rroxscaffold_4G00300210 Rroxscaffold_7G00214190
rosa_rugosa	Rorug01G0474200
rosa_samantha	Rh1CG122800 Rh2AG027800 Rh2AG631400 Rh2BG027300 Rh2BG300600 Rh2CG028100 Rh2DG027900 Rh4BG234200 Rh5CG220000 Rh6BG190700 Rh6CG106700 Rh6CG108200 Rh6DG097200 Rh6DG098600 Rh7CG224800
rosa_wichuraiana	Rw1G013320 Rw2G002200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	317
AciI	CCGC	2 cut(s)	10, 317
AclWI	GGATC	1 cut(s)	339
AcuI	CTGAAG	1 cut(s)	113
AfaI	GTAC	2 cut(s)	53, 62
AfiI	CCNNNNNNNGG	1 cut(s)	226
AflIII	ACRYGT	1 cut(s)	277
AgsI	TTSAA	2 cut(s)	24, 263
AluBI	AGCT	2 cut(s)	236, 245
AluI	AGCT	2 cut(s)	236, 245
Alw21I	GWGCWC	1 cut(s)	247
AlwI	GGATC	1 cut(s)	339
Ama87I	CYCGRG	1 cut(s)	312
AoxI	GGCC	2 cut(s)	256, 299
AspS9I	GGNCC	2 cut(s)	300, 358
AsuC2I	CCSGG	1 cut(s)	198
AvaI	CYCGRG	1 cut(s)	312
AvaII	GGWCC	1 cut(s)	358
BanII	GRGCYC	1 cut(s)	247
Bbv12I	GWGCWC	1 cut(s)	247
BccI	CCATC	3 cut(s)	186, 229, 302
BceAI	ACGGC	1 cut(s)	43
BcnI	CCSGG	1 cut(s)	198
BfaI	CTAG	1 cut(s)	248
BglI	GCCNNNNNGGC	1 cut(s)	298
BisI	GCNGC	1 cut(s)	10
BlsI	GCNGC	1 cut(s)	11
Bme1390I	CCNGG	1 cut(s)	198
Bme18I	GGWCC	1 cut(s)	358
BmeT110I	CYCGRG	1 cut(s)	312
BmgT120I	GGNCC	2 cut(s)	300, 358
BmiI	GGNNCC	1 cut(s)	360
BmrFI	CCNGG	1 cut(s)	198
BmsI	GCATC	1 cut(s)	78
BpuMI	CCSGG	1 cut(s)	198
BsaAI	YACGTR	1 cut(s)	278
BsaJI	CCNNGG	2 cut(s)	197, 327
Bsc4I	CCNNNNNNNGG	1 cut(s)	226
BseDI	CCNNGG	2 cut(s)	197, 327
BseGI	GGATG	3 cut(s)	79, 178, 193
BseLI	CCNNNNNNNGG	1 cut(s)	226
BseRI	GAGGAG	1 cut(s)	242
BshFI	GGCC	2 cut(s)	258, 301
BsiHKAI	GWGCWC	1 cut(s)	247
BsiHKCI	CYCGRG	1 cut(s)	312
BsiSI	CCGG	1 cut(s)	197
BslFI	GGGAC	1 cut(s)	253
BslI	CCNNNNNNNGG	1 cut(s)	226
BsmFI	GGGAC	1 cut(s)	253
BsnI	GGCC	2 cut(s)	258, 301
BsoBI	CYCGRG	1 cut(s)	312
Bsp1286I	GDGCHC	1 cut(s)	247
Bsp143I	GATC	2 cut(s)	163, 331
BspACI	CCGC	2 cut(s)	10, 317
BspANI	GGCC	2 cut(s)	258, 301
BspLI	GGNNCC	1 cut(s)	360
BspPI	GGATC	1 cut(s)	339
BsrBI	CCGCTC	1 cut(s)	317
BssECI	CCNNGG	2 cut(s)	197, 327
BssMI	GATC	2 cut(s)	163, 331
BssT1I	CCWWGG	1 cut(s)	327
Bst4CI	ACNGT	2 cut(s)	154, 189
Bst6I	CTCTTC	1 cut(s)	258
BstBAI	YACGTR	1 cut(s)	278
BstC8I	GCNNGC	1 cut(s)	290
BstF5I	GGATG	3 cut(s)	79, 178, 193
BstKTI	GATC	2 cut(s)	166, 334
BstMBI	GATC	2 cut(s)	163, 331
BstMWI	GCNNNNNNNGC	2 cut(s)	242, 298
BstSCI	CCNGG	1 cut(s)	196
BsuRI	GGCC	2 cut(s)	258, 301
BtsCI	GGATG	3 cut(s)	79, 178, 193
BtsIMutI	CAGTG	1 cut(s)	159
Cac8I	GCNNGC	1 cut(s)	290
Cfr13I	GGNCC	2 cut(s)	300, 358
Csp6I	GTAC	2 cut(s)	52, 61
CspCI	CAANNNNNGTGG	2 cut(s)	12, 47
CviJI	RGCY	8 cut(s)	9, 38, 58, 236, 245, 258, 288, 301
CviKI_1	RGCY	8 cut(s)	9, 38, 58, 236, 245, 258, 288, 301
CviQI	GTAC	2 cut(s)	52, 61
DpnI	GATC	2 cut(s)	165, 333
DpnII	GATC	2 cut(s)	163, 331
Eam1104I	CTCTTC	1 cut(s)	258
EarI	CTCTTC	1 cut(s)	258
Ecl136II	GAGCTC	1 cut(s)	245
Eco130I	CCWWGG	1 cut(s)	327
Eco24I	GRGCYC	1 cut(s)	247
Eco47I	GGWCC	1 cut(s)	358
Eco53kI	GAGCTC	1 cut(s)	245
Eco57I	CTGAAG	1 cut(s)	113
Eco88I	CYCGRG	1 cut(s)	312
EcoICRI	GAGCTC	1 cut(s)	245
EcoO109I	RGGNCCY	1 cut(s)	300
EcoT14I	CCWWGG	1 cut(s)	327
EcoT38I	GRGCYC	1 cut(s)	247
ErhI	CCWWGG	1 cut(s)	327
FaiI	YATR	3 cut(s)	68, 96, 255
FaqI	GGGAC	1 cut(s)	253
Fnu4HI	GCNGC	1 cut(s)	10
FokI	GGATG	3 cut(s)	66, 165, 180
FriOI	GRGCYC	1 cut(s)	247
Fsp4HI	GCNGC	1 cut(s)	10
FspBI	CTAG	1 cut(s)	248
GluI	GCNGC	1 cut(s)	10
HaeIII	GGCC	2 cut(s)	258, 301
HapII	CCGG	1 cut(s)	197
HinfI	GANTC	1 cut(s)	266
HpaII	CCGG	1 cut(s)	197
Hpy188I	TCNGA	2 cut(s)	132, 226
HpyCH4III	ACNGT	2 cut(s)	154, 189
HpyCH4IV	ACGT	1 cut(s)	277
HpyCH4V	TGCA	1 cut(s)	91
HpyF10VI	GCNNNNNNNGC	2 cut(s)	242, 298
HpySE526I	ACGT	1 cut(s)	277
Kzo9I	GATC	2 cut(s)	163, 331
LpnPI	CCDG	3 cut(s)	24, 210, 283
LweI	GCATC	1 cut(s)	78
MaeI	CTAG	1 cut(s)	248
MaeII	ACGT	1 cut(s)	277
MaeIII	GTNAC	2 cut(s)	148, 212
MalI	GATC	2 cut(s)	165, 333
MbiI	CCGCTC	1 cut(s)	317
MboI	GATC	2 cut(s)	163, 331
MboII	GAAGA	2 cut(s)	145, 275
MhlI	GDGCHC	1 cut(s)	247
MluCI	AATT	1 cut(s)	69
MlyI	GAGTC	1 cut(s)	275
MnlI	CCTC	6 cut(s)	22, 28, 111, 220, 223, 313
MspI	CCGG	1 cut(s)	197
MspR9I	CCNGG	1 cut(s)	198
MwoI	GCNNNNNNNGC	2 cut(s)	242, 298
NciI	CCSGG	1 cut(s)	198
NdeII	GATC	2 cut(s)	163, 331
NlaIV	GGNNCC	1 cut(s)	360
NmuCI	GTSAC	1 cut(s)	148
PkrI	GCNGC	1 cut(s)	11
PleI	GAGTC	1 cut(s)	274
PpsI	GAGTC	1 cut(s)	274
Ppu21I	YACGTR	1 cut(s)	278
Psp124BI	GAGCTC	1 cut(s)	247
PspN4I	GGNNCC	1 cut(s)	360
PspPI	GGNCC	2 cut(s)	300, 358
RsaI	GTAC	2 cut(s)	53, 62
RsaNI	GTAC	2 cut(s)	52, 61
SacI	GAGCTC	1 cut(s)	247
SatI	GCNGC	1 cut(s)	10
Sau3AI	GATC	2 cut(s)	163, 331
Sau96I	GGNCC	2 cut(s)	300, 358
SchI	GAGTC	1 cut(s)	275
ScrFI	CCNGG	1 cut(s)	198
SduI	GDGCHC	1 cut(s)	247
SetI	ASST	6 cut(s)	33, 212, 234, 238, 247, 280
SfaNI	GCATC	1 cut(s)	78
SinI	GGWCC	1 cut(s)	358
Sse9I	AATT	1 cut(s)	69
SsiI	CCGC	2 cut(s)	10, 317
SspMI	CTAG	1 cut(s)	248
SstI	GAGCTC	1 cut(s)	247
StyD4I	CCNGG	1 cut(s)	196
StyI	CCWWGG	1 cut(s)	327
TaaI	ACNGT	2 cut(s)	154, 189
TaiI	ACGT	1 cut(s)	280
TaqI	TCGA	1 cut(s)	351
TasI	AATT	1 cut(s)	69
TatI	WGTACW	1 cut(s)	51
TauI	GCSGC	1 cut(s)	12
TscAI	CASTG	1 cut(s)	159
TseFI	GTSAC	1 cut(s)	148
Tsp45I	GTSAC	1 cut(s)	148
TspDTI	ATGAA	2 cut(s)	68, 182
TspRI	CASTG	1 cut(s)	159
VpaK11BI	GGWCC	1 cut(s)	358
XspI	CTAG	1 cut(s)	248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.