Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0001366

Physical Location & Seq

Genomic Coordinates Forward (+)

22375727 .. 22378305

Gene Structure 2579 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG220000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGACAACGATTTTTGGAATTAAGTTTCAGCTGCTTAGAGAAGCTACCACTTCCGTTTTGGAGATACTGAAACTTGATGTTATCTCATTTTTGTACATTCCAATACAGGTATTTGTGAAGGATGTGTGGAAAGAATACACAGGTTGGCCTTTAAATAATATGGACAGGCCTTACAAGTTCATGGTGAAACATGTTCAGCTATGGAAGGTTGCATTTCACAGTACTTCTCCTAGATGGATCCACAGTGTCTATCTTGCTGCCATTGCAGCCTACTATGCCAAGGAGGTGGAGGCTGGTCTAATGGAGTACAAGCCAGACATCATAATTAGTGTTCATCCTTTGATGCAACATATTCCTCTTTTCTCAAATGGCAAGGACTTCAGAAGAAAGTTTCATCTGGGGGTCAATAGGTGTTACTGCCCATCGGAGGAGGTAGCTAAAAGAGCTCTAGTATATGGCCTTGAAGAGTCTCAAAAACGTGTTTTTGGCTTGCCCATCAGGCCCTCTTTTGCCCGAGTGGTTATCTCCAAGGATCAACTCAGAGGAGAACTCGAAATGGACCCTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006643 GO:0006664 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008194 GO:0008378 GO:0009267 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009605 GO:0009707 GO:0009941 GO:0009987 GO:0009991 GO:0016020 GO:0016036 GO:0016740 GO:0016757 GO:0016758 GO:0019374 GO:0019752 GO:0019867 GO:0031090 GO:0031667 GO:0031668 GO:0031669 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032787 GO:0033554 GO:0035250 GO:0042170 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0071496 GO:0071704 GO:0098588 GO:0098805 GO:1901135 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00561 ko01100 map00561 map01100

Pfam Domains

Protein Families

Glyco_tran_28_C MGDG_synth

Protein Analysis

189

Amino Acids

22.07

Weight (kDa)

9.15

Isoelectric Point (pI)

36.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MGDG_synth	PF06925	35 - 120	8.5e-25	Monogalactosyldiacylglycerol (MGDG) synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001366)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G11810 AT2G11810 AT2G11810 AT2G11810 AT5G20410
fragaria_vesca	FvH4_1g02220 FvH4_1g02220 FvH4_1g02220 FvH4_1g21680
malus_domestica	MD02G1020400.v1.1 MD15G1163200.v1.1
prunus_persica	Prupe.7G251400_v2.0.a1
pyrus_communis	pycom02g01790 pycom15g14680
rosa_chinensis	RchiOBHm_Chr2g0087331 RchiOBHm_Chr3g0481741 RchiOBHm_Chr4g0421821 RchiOBHm_Chr6g0246901
rosa_laevigata	RLG00000003836 RLG00000015857
rosa_multiflora	Rmu_co8187728.1_g000001 Rmu_co8222200.1_g000001 Rmu_sc0000540.1_g000032 Rmu_sc0003367.1_g000024 Rmu_sc0006064.1_g000001 Rmu_sc0007105.1_g000003 Rmu_sc0016592.1_g000001 Rmu_sc0037595.1_g000001
rosa_roxburghii	Rroxscaffold_1G00028410 Rroxscaffold_2G00111080 Rroxscaffold_2G00153680 Rroxscaffold_3G00242830 Rroxscaffold_4G00276430 Rroxscaffold_4G00300210 Rroxscaffold_7G00214190
rosa_rugosa	Rorug01G0474200
rosa_samantha	Rh1CG122800 Rh2AG027800 Rh2AG631400 Rh2BG027300 Rh2BG300600 Rh2CG028100 Rh2DG027900 Rh4BG234200 Rh5CG220000 Rh6BG190700 Rh6CG106700 Rh6CG108200 Rh6DG097200 Rh6DG098600 Rh7CG224800
rosa_wichuraiana	Rw1G013320 Rw2G002200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	232, 245, 540
AcuI	CTGAAG	1 cut(s)	364
AfaI	GTAC	3 cut(s)	95, 223, 308
AfiI	CCNNNNNNNGG	1 cut(s)	427
AflIII	ACRYGT	2 cut(s)	190, 478
AgsI	TTSAA	1 cut(s)	464
AluBI	AGCT	5 cut(s)	31, 44, 199, 437, 446
AluI	AGCT	5 cut(s)	31, 44, 199, 437, 446
Alw21I	GWGCWC	1 cut(s)	448
Alw26I	GTCTC	1 cut(s)	474
AlwI	GGATC	3 cut(s)	232, 245, 540
Ama87I	CYCGRG	1 cut(s)	513
AoxI	GGCC	4 cut(s)	146, 167, 457, 500
ApeKI	GCWGC	3 cut(s)	31, 257, 266
AspS9I	GGNCC	2 cut(s)	501, 559
AsuHPI	GGTGA	1 cut(s)	196
AvaI	CYCGRG	1 cut(s)	513
AvaII	GGWCC	1 cut(s)	559
BamHI	GGATCC	1 cut(s)	237
BanII	GRGCYC	1 cut(s)	448
Bbv12I	GWGCWC	1 cut(s)	448
BbvI	GCAGC	3 cut(s)	18, 244, 278
BccI	CCATC	3 cut(s)	228, 430, 503
BcoDI	GTCTC	1 cut(s)	474
BfaI	CTAG	2 cut(s)	231, 449
BglI	GCCNNNNNGGC	1 cut(s)	499
BisI	GCNGC	3 cut(s)	32, 258, 267
BlsI	GCNGC	3 cut(s)	33, 259, 268
BmcAI	AGTACT	1 cut(s)	223
Bme18I	GGWCC	1 cut(s)	559
BmeT110I	CYCGRG	1 cut(s)	513
BmgT120I	GGNCC	2 cut(s)	501, 559
BmiI	GGNNCC	2 cut(s)	239, 561
BmsI	GCATC	1 cut(s)	333
BplI	GAGNNNNNCTC	2 cut(s)	534, 566
BsaJI	CCNNGG	2 cut(s)	279, 528
Bsc4I	CCNNNNNNNGG	1 cut(s)	427
Bse3DI	GCAATG	1 cut(s)	261
BseDI	CCNNGG	2 cut(s)	279, 528
BseGI	GGATG	2 cut(s)	127, 334
BseLI	CCNNNNNNNGG	1 cut(s)	427
BseMI	GCAATG	1 cut(s)	261
BseMII	CTCAG	1 cut(s)	553
BseRI	GAGGAG	2 cut(s)	443, 558
BseXI	GCAGC	3 cut(s)	18, 244, 278
BshFI	GGCC	4 cut(s)	148, 169, 459, 502
BsiHKAI	GWGCWC	1 cut(s)	448
BsiHKCI	CYCGRG	1 cut(s)	513
BslI	CCNNNNNNNGG	1 cut(s)	427
BsmAI	GTCTC	1 cut(s)	474
BsnI	GGCC	4 cut(s)	148, 169, 459, 502
BsoBI	CYCGRG	1 cut(s)	513
Bsp1286I	GDGCHC	1 cut(s)	448
Bsp1407I	TGTACA	1 cut(s)	93
Bsp143I	GATC	2 cut(s)	237, 532
BspANI	GGCC	4 cut(s)	148, 169, 459, 502
BspCNI	CTCAG	1 cut(s)	552
BspLI	GGNNCC	2 cut(s)	239, 561
BspPI	GGATC	3 cut(s)	232, 245, 540
BsrDI	GCAATG	1 cut(s)	261
BsrGI	TGTACA	1 cut(s)	93
BssECI	CCNNGG	2 cut(s)	279, 528
BssMI	GATC	2 cut(s)	237, 532
BssT1I	CCWWGG	2 cut(s)	279, 528
Bst4CI	ACNGT	2 cut(s)	221, 245
Bst6I	CTCTTC	1 cut(s)	459
BstAUI	TGTACA	1 cut(s)	93
BstC8I	GCNNGC	1 cut(s)	491
BstDEI	CTNAG	2 cut(s)	35, 539
BstF5I	GGATG	2 cut(s)	127, 334
BstKTI	GATC	2 cut(s)	240, 535
BstMAI	GTCTC	1 cut(s)	474
BstMBI	GATC	2 cut(s)	237, 532
BstMWI	GCNNNNNNNGC	5 cut(s)	263, 266, 275, 443, 499
BstNSI	RCATGY	1 cut(s)	194
BstV1I	GCAGC	3 cut(s)	18, 244, 278
BstX2I	RGATCY	1 cut(s)	237
BstXI	CCANNNNNNTGG	1 cut(s)	286
BstYI	RGATCY	1 cut(s)	237
BsuRI	GGCC	4 cut(s)	148, 169, 459, 502
BtsCI	GGATG	2 cut(s)	127, 334
BtsIMutI	CAGTG	1 cut(s)	250
Cac8I	GCNNGC	1 cut(s)	491
Cfr13I	GGNCC	2 cut(s)	501, 559
Csp6I	GTAC	3 cut(s)	94, 222, 307
CviAII	CATG	2 cut(s)	181, 191
CviQI	GTAC	3 cut(s)	94, 222, 307
DdeI	CTNAG	2 cut(s)	35, 539
DpnI	GATC	2 cut(s)	239, 534
DpnII	GATC	2 cut(s)	237, 532
DraI	TTTAAA	1 cut(s)	153
Eam1104I	CTCTTC	1 cut(s)	459
EarI	CTCTTC	1 cut(s)	459
Ecl136II	GAGCTC	1 cut(s)	446
Eco130I	CCWWGG	2 cut(s)	279, 528
Eco147I	AGGCCT	1 cut(s)	169
Eco24I	GRGCYC	1 cut(s)	448
Eco47I	GGWCC	1 cut(s)	559
Eco53kI	GAGCTC	1 cut(s)	446
Eco57I	CTGAAG	1 cut(s)	364
Eco88I	CYCGRG	1 cut(s)	513
EcoICRI	GAGCTC	1 cut(s)	446
EcoO109I	RGGNCCY	1 cut(s)	501
EcoT14I	CCWWGG	2 cut(s)	279, 528
EcoT38I	GRGCYC	1 cut(s)	448
ErhI	CCWWGG	2 cut(s)	279, 528
FaeI	CATG	2 cut(s)	184, 194
FaiI	YATR	9 cut(s)	161, 182, 192, 202, 276, 323, 351, 454, 456
FatI	CATG	2 cut(s)	180, 190
Fnu4HI	GCNGC	3 cut(s)	32, 258, 267
FokI	GGATG	2 cut(s)	134, 321
FriOI	GRGCYC	1 cut(s)	448
Fsp4HI	GCNGC	3 cut(s)	32, 258, 267
FspBI	CTAG	2 cut(s)	231, 449
GluI	GCNGC	3 cut(s)	32, 258, 267
HaeIII	GGCC	4 cut(s)	148, 169, 459, 502
Hin1II	CATG	2 cut(s)	184, 194
HinfI	GANTC	1 cut(s)	467
HphI	GGTGA	1 cut(s)	196
Hpy188I	TCNGA	3 cut(s)	383, 427, 542
HpyAV	CCTTC	2 cut(s)	112, 199
HpyCH4III	ACNGT	2 cut(s)	221, 245
HpyCH4IV	ACGT	1 cut(s)	478
HpyCH4V	TGCA	3 cut(s)	212, 266, 346
HpyF10VI	GCNNNNNNNGC	5 cut(s)	263, 266, 275, 443, 499
HpyF3I	CTNAG	2 cut(s)	35, 539
HpySE526I	ACGT	1 cut(s)	478
Hsp92II	CATG	2 cut(s)	184, 194
Kzo9I	GATC	2 cut(s)	237, 532
LpnPI	CCDG	7 cut(s)	92, 126, 151, 279, 327, 383, 484
Lsp1109I	GCAGC	3 cut(s)	18, 244, 278
LweI	GCATC	1 cut(s)	333
MaeI	CTAG	2 cut(s)	231, 449
MaeII	ACGT	1 cut(s)	478
MaeIII	GTNAC	1 cut(s)	413
MalI	GATC	2 cut(s)	239, 534
MboI	GATC	2 cut(s)	237, 532
MboII	GAAGA	2 cut(s)	396, 476
MflI	RGATCY	1 cut(s)	237
MhlI	GDGCHC	1 cut(s)	448
MluCI	AATT	2 cut(s)	18, 324
MlyI	GAGTC	1 cut(s)	476
MnlI	CCTC	7 cut(s)	277, 283, 366, 421, 424, 514, 536
MseI	TTAA	2 cut(s)	21, 152
MspA1I	CMGCKG	1 cut(s)	31
MwoI	GCNNNNNNNGC	5 cut(s)	263, 266, 275, 443, 499
NdeII	GATC	2 cut(s)	237, 532
NlaIII	CATG	2 cut(s)	184, 194
NlaIV	GGNNCC	2 cut(s)	239, 561
NspI	RCATGY	1 cut(s)	194
PceI	AGGCCT	1 cut(s)	169
PciI	ACATGT	1 cut(s)	190
PkrI	GCNGC	3 cut(s)	33, 259, 268
PleI	GAGTC	1 cut(s)	475
PpsI	GAGTC	1 cut(s)	475
PscI	ACATGT	1 cut(s)	190
Psp124BI	GAGCTC	1 cut(s)	448
PspN4I	GGNNCC	2 cut(s)	239, 561
PspPI	GGNCC	2 cut(s)	501, 559
PsuI	RGATCY	1 cut(s)	237
PvuII	CAGCTG	1 cut(s)	31
RsaI	GTAC	3 cut(s)	95, 223, 308
RsaNI	GTAC	3 cut(s)	94, 222, 307
SacI	GAGCTC	1 cut(s)	448
SaqAI	TTAA	2 cut(s)	21, 152
SatI	GCNGC	3 cut(s)	32, 258, 267
Sau3AI	GATC	2 cut(s)	237, 532
Sau96I	GGNCC	2 cut(s)	501, 559
ScaI	AGTACT	1 cut(s)	223
SchI	GAGTC	1 cut(s)	476
SduI	GDGCHC	1 cut(s)	448
SfaNI	GCATC	1 cut(s)	333
SinI	GGWCC	1 cut(s)	559
Sse9I	AATT	2 cut(s)	18, 324
SseBI	AGGCCT	1 cut(s)	169
SspMI	CTAG	2 cut(s)	231, 449
SstI	GAGCTC	1 cut(s)	448
StuI	AGGCCT	1 cut(s)	169
StyI	CCWWGG	2 cut(s)	279, 528
TaaI	ACNGT	2 cut(s)	221, 245
TaiI	ACGT	1 cut(s)	481
TaqI	TCGA	1 cut(s)	552
TasI	AATT	2 cut(s)	18, 324
TatI	WGTACW	3 cut(s)	93, 221, 306
Tru1I	TTAA	2 cut(s)	21, 152
Tru9I	TTAA	2 cut(s)	21, 152
TscAI	CASTG	1 cut(s)	250
TseI	GCWGC	3 cut(s)	31, 257, 266
TspDTI	ATGAA	3 cut(s)	169, 323, 383
TspGWI	ACGGA	1 cut(s)	43
TspRI	CASTG	1 cut(s)	250
VpaK11BI	GGWCC	1 cut(s)	559
XceI	RCATGY	1 cut(s)	194
XcmI	CCANNNNNNNNNTGG	1 cut(s)	55
XspI	CTAG	2 cut(s)	231, 449
ZrmI	AGTACT	1 cut(s)	223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.