Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0001366

Physical Location & Seq

Genomic Coordinates Forward (+)

12264955 .. 12281811

Gene Structure 16857 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG106700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGGACCTGTTGGGAGTGGCGGGAAGGCGTCCTTGTCTTCCAATGGTGGTCTGCTACAGCTCACGTGACGAGATCGACGTCGTCAGCTCCACCGTCGCAACCGTCCCCTATATCTCTTTAGCCCCTCTGGTATTTGTGAAGGATGTGTGGAAAGAATACACAGGTTGGCCTTTAAATAATATGGACAGGCCTTACAAGTTCATGGTGAAACATGTTCAGCTATGGAAGGTTGCATTTCACAGTACTTCTCCTAGATGGATCCACAGTGTCTATCTTGCTGCCATTGCAGCCTACTATGCCAAGGAGGTGGAGGCTGGTCTAATGGAGTACAAGCCAGACATCATAATTATGATTACTGATCTCAACACTTGCCATCCTACATGGTTTCATCTGGGGGTCAATAGGTGTTACTGCCCATCGGAGGAGGTAGCTAAAAGAGCTCTAGTATATGGCCTTGAAGAGTCTCAAAAACGTGTTTTTGGCTTGCCCATCAGGCCCTCTTTTGCCCGAGCGGTTATCTCCAAGGATCAACTCATTATTTGTGGCCGCAATAAAAACCTTGTCTCCACGCTTGAATCTGATGAGTGGAACATCCCAGTCAAGGTTAGAGGATTTGAGACACAAATGGAGAAATGGATGGGATCTTGTGACTGCATCATAACAAAAGAAACTTGTGGTGATTGCAAGGGTGAGAGAGAAAGGGAGCTCAAAAAGCTGCTGGAAAATTTTAATAGCAAAAGAAGGTTGGTCATCAACCCCACAATTGACAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006643 GO:0006664 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008194 GO:0008378 GO:0009267 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009605 GO:0009707 GO:0009941 GO:0009987 GO:0009991 GO:0016020 GO:0016036 GO:0016740 GO:0016757 GO:0016758 GO:0019374 GO:0019752 GO:0019867 GO:0031090 GO:0031667 GO:0031668 GO:0031669 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032787 GO:0033554 GO:0035250 GO:0042170 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0071496 GO:0071704 GO:0098588 GO:0098805 GO:1901135 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00561 ko01100 map00561 map01100

Pfam Domains

Protein Families

Glyco_tran_28_C MGDG_synth

Protein Analysis

257

Amino Acids

29.5

Weight (kDa)

8.46

Isoelectric Point (pI)

42.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MGDG_synth	PF06925	44 - 117	1.2e-17	Monogalactosyldiacylglycerol (MGDG) synthase
MGDG_synth	PF06925	117 - 164	6e-13	Monogalactosyldiacylglycerol (MGDG) synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001366)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G11810 AT2G11810 AT2G11810 AT2G11810 AT5G20410
fragaria_vesca	FvH4_1g02220 FvH4_1g02220 FvH4_1g02220 FvH4_1g21680
malus_domestica	MD02G1020400.v1.1 MD15G1163200.v1.1
prunus_persica	Prupe.7G251400_v2.0.a1
pyrus_communis	pycom02g01790 pycom15g14680
rosa_chinensis	RchiOBHm_Chr2g0087331 RchiOBHm_Chr3g0481741 RchiOBHm_Chr4g0421821 RchiOBHm_Chr6g0246901
rosa_laevigata	RLG00000003836 RLG00000015857
rosa_multiflora	Rmu_co8187728.1_g000001 Rmu_co8222200.1_g000001 Rmu_sc0000540.1_g000032 Rmu_sc0003367.1_g000024 Rmu_sc0006064.1_g000001 Rmu_sc0007105.1_g000003 Rmu_sc0016592.1_g000001 Rmu_sc0037595.1_g000001
rosa_roxburghii	Rroxscaffold_1G00028410 Rroxscaffold_2G00111080 Rroxscaffold_2G00153680 Rroxscaffold_3G00242830 Rroxscaffold_4G00276430 Rroxscaffold_4G00300210 Rroxscaffold_7G00214190
rosa_rugosa	Rorug01G0474200
rosa_samantha	Rh1CG122800 Rh2AG027800 Rh2AG631400 Rh2BG027300 Rh2BG300600 Rh2CG028100 Rh2DG027900 Rh4BG234200 Rh5CG220000 Rh6BG190700 Rh6CG106700 Rh6CG108200 Rh6DG097200 Rh6DG098600 Rh7CG224800
rosa_wichuraiana	Rw1G013320 Rw2G002200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	81
AccBSI	CCGCTC	1 cut(s)	512
AciI	CCGC	3 cut(s)	20, 512, 547
AclWI	GGATC	4 cut(s)	253, 266, 534, 649
AcoI	YGGCCR	1 cut(s)	544
AcsI	RAATTY	1 cut(s)	724
AcvI	CACGTG	1 cut(s)	65
AcyI	GRCGYC	2 cut(s)	28, 78
AfaI	GTAC	2 cut(s)	244, 329
AfiI	CCNNNNNNNGG	2 cut(s)	421, 601
AflIII	ACRYGT	2 cut(s)	211, 472
AgsI	TTSAA	2 cut(s)	458, 575
AluBI	AGCT	7 cut(s)	60, 87, 220, 431, 440, 706, 715
AluI	AGCT	7 cut(s)	60, 87, 220, 431, 440, 706, 715
Alw21I	GWGCWC	2 cut(s)	442, 708
Alw26I	GTCTC	3 cut(s)	468, 568, 611
AlwI	GGATC	4 cut(s)	253, 266, 534, 649
Ama87I	CYCGRG	1 cut(s)	507
AoxI	GGCC	5 cut(s)	167, 188, 451, 494, 544
ApeKI	GCWGC	3 cut(s)	278, 287, 715
ApoI	RAATTY	1 cut(s)	724
AspS9I	GGNCC	2 cut(s)	4, 495
AsuHPI	GGTGA	3 cut(s)	217, 689, 701
AvaI	CYCGRG	1 cut(s)	507
AvaII	GGWCC	1 cut(s)	4
BamHI	GGATCC	1 cut(s)	258
BanII	GRGCYC	2 cut(s)	442, 708
BbrPI	CACGTG	1 cut(s)	65
BbsI	GAAGAC	1 cut(s)	29
Bbv12I	GWGCWC	2 cut(s)	442, 708
BbvI	GCAGC	3 cut(s)	265, 299, 702
BccI	CCATC	5 cut(s)	249, 381, 424, 497, 631
BcoDI	GTCTC	3 cut(s)	468, 568, 611
BfaI	CTAG	2 cut(s)	252, 443
BfmI	CTRYAG	1 cut(s)	55
BglI	GCCNNNNNGGC	1 cut(s)	493
BisI	GCNGC	4 cut(s)	279, 288, 547, 716
BlsI	GCNGC	4 cut(s)	280, 289, 548, 717
BmcAI	AGTACT	1 cut(s)	244
Bme18I	GGWCC	1 cut(s)	4
BmeT110I	CYCGRG	1 cut(s)	507
BmgT120I	GGNCC	2 cut(s)	4, 495
BmiI	GGNNCC	1 cut(s)	260
BmrI	ACTGGG	1 cut(s)	590
BmsI	GCATC	1 cut(s)	663
BmuI	ACTGGG	1 cut(s)	590
BpiI	GAAGAC	1 cut(s)	29
BsaAI	YACGTR	1 cut(s)	65
BsaHI	GRCGYC	2 cut(s)	28, 78
BsaJI	CCNNGG	2 cut(s)	300, 522
BsaXI	ACNNNNNCTCC	2 cut(s)	548, 578
Bsc4I	CCNNNNNNNGG	2 cut(s)	421, 601
Bse1I	ACTGG	1 cut(s)	596
Bse3DI	GCAATG	1 cut(s)	282
BseDI	CCNNGG	2 cut(s)	300, 522
BseGI	GGATG	4 cut(s)	148, 373, 591, 642
BseLI	CCNNNNNNNGG	2 cut(s)	421, 601
BseMI	GCAATG	1 cut(s)	282
BseNI	ACTGG	1 cut(s)	596
BseRI	GAGGAG	1 cut(s)	437
BseXI	GCAGC	3 cut(s)	265, 299, 702
BshFI	GGCC	5 cut(s)	169, 190, 453, 496, 546
BsiHKAI	GWGCWC	2 cut(s)	442, 708
BsiHKCI	CYCGRG	1 cut(s)	507
BslFI	GGGAC	1 cut(s)	89
BslI	CCNNNNNNNGG	2 cut(s)	421, 601
BsmAI	GTCTC	3 cut(s)	468, 568, 611
BsmFI	GGGAC	1 cut(s)	89
BsnI	GGCC	5 cut(s)	169, 190, 453, 496, 546
BsoBI	CYCGRG	1 cut(s)	507
Bsp1286I	GDGCHC	2 cut(s)	442, 708
Bsp143I	GATC	5 cut(s)	72, 258, 358, 526, 641
BspACI	CCGC	3 cut(s)	20, 512, 547
BspANI	GGCC	5 cut(s)	169, 190, 453, 496, 546
BspLI	GGNNCC	1 cut(s)	260
BspPI	GGATC	4 cut(s)	253, 266, 534, 649
BsrBI	CCGCTC	1 cut(s)	512
BsrDI	GCAATG	1 cut(s)	282
BsrI	ACTGG	1 cut(s)	596
BssECI	CCNNGG	2 cut(s)	300, 522
BssMI	GATC	5 cut(s)	72, 258, 358, 526, 641
BssNI	GRCGYC	2 cut(s)	28, 78
BssT1I	CCWWGG	2 cut(s)	300, 522
Bst4CI	ACNGT	4 cut(s)	94, 103, 242, 266
Bst6I	CTCTTC	1 cut(s)	453
BstACI	GRCGYC	2 cut(s)	28, 78
BstBAI	YACGTR	1 cut(s)	65
BstC8I	GCNNGC	1 cut(s)	485
BstF5I	GGATG	4 cut(s)	148, 373, 591, 642
BstKTI	GATC	5 cut(s)	75, 261, 361, 529, 644
BstMAI	GTCTC	3 cut(s)	468, 568, 611
BstMBI	GATC	5 cut(s)	72, 258, 358, 526, 641
BstMWI	GCNNNNNNNGC	6 cut(s)	284, 287, 296, 437, 493, 712
BstNSI	RCATGY	1 cut(s)	215
BstSFI	CTRYAG	1 cut(s)	55
BstV1I	GCAGC	3 cut(s)	265, 299, 702
BstV2I	GAAGAC	1 cut(s)	29
BstX2I	RGATCY	2 cut(s)	258, 641
BstXI	CCANNNNNNTGG	1 cut(s)	307
BstYI	RGATCY	2 cut(s)	258, 641
BsuRI	GGCC	5 cut(s)	169, 190, 453, 496, 546
BtsCI	GGATG	4 cut(s)	148, 373, 591, 642
BtsIMutI	CAGTG	1 cut(s)	271
Cac8I	GCNNGC	1 cut(s)	485
Cfr13I	GGNCC	2 cut(s)	4, 495
CseI	GACGC	1 cut(s)	17
Csp6I	GTAC	2 cut(s)	243, 328
CviAII	CATG	3 cut(s)	202, 212, 381
CviQI	GTAC	2 cut(s)	243, 328
DpnI	GATC	5 cut(s)	74, 260, 360, 528, 643
DpnII	GATC	5 cut(s)	72, 258, 358, 526, 641
DraI	TTTAAA	1 cut(s)	174
EaeI	YGGCCR	1 cut(s)	544
Eam1104I	CTCTTC	1 cut(s)	453
EarI	CTCTTC	1 cut(s)	453
Ecl136II	GAGCTC	2 cut(s)	440, 706
Eco130I	CCWWGG	2 cut(s)	300, 522
Eco147I	AGGCCT	1 cut(s)	190
Eco24I	GRGCYC	2 cut(s)	442, 708
Eco47I	GGWCC	1 cut(s)	4
Eco53kI	GAGCTC	2 cut(s)	440, 706
Eco72I	CACGTG	1 cut(s)	65
Eco88I	CYCGRG	1 cut(s)	507
EcoICRI	GAGCTC	2 cut(s)	440, 706
EcoO109I	RGGNCCY	1 cut(s)	495
EcoT14I	CCWWGG	2 cut(s)	300, 522
EcoT38I	GRGCYC	2 cut(s)	442, 708
ErhI	CCWWGG	2 cut(s)	300, 522
FaeI	CATG	3 cut(s)	205, 215, 384
FalI	AAGNNNNNCTT	2 cut(s)	16, 48
FaqI	GGGAC	1 cut(s)	89
FatI	CATG	3 cut(s)	201, 211, 380
FauI	CCCGC	1 cut(s)	13
Fnu4HI	GCNGC	4 cut(s)	279, 288, 547, 716
FokI	GGATG	4 cut(s)	155, 360, 578, 649
FriOI	GRGCYC	2 cut(s)	442, 708
Fsp4HI	GCNGC	4 cut(s)	279, 288, 547, 716
FspBI	CTAG	2 cut(s)	252, 443
GluI	GCNGC	4 cut(s)	279, 288, 547, 716
HaeIII	GGCC	5 cut(s)	169, 190, 453, 496, 546
HgaI	GACGC	1 cut(s)	17
Hin1I	GRCGYC	2 cut(s)	28, 78
Hin1II	CATG	3 cut(s)	205, 215, 384
HinfI	GANTC	2 cut(s)	461, 575
HphI	GGTGA	3 cut(s)	217, 689, 701
Hpy188I	TCNGA	2 cut(s)	421, 580
Hpy99I	CGWCG	3 cut(s)	80, 83, 98
HpyAV	CCTTC	4 cut(s)	18, 133, 220, 735
HpyCH4III	ACNGT	4 cut(s)	94, 103, 242, 266
HpyCH4IV	ACGT	3 cut(s)	64, 78, 472
HpyCH4V	TGCA	4 cut(s)	233, 287, 654, 684
HpyF10VI	GCNNNNNNNGC	6 cut(s)	284, 287, 296, 437, 493, 712
HpySE526I	ACGT	3 cut(s)	64, 78, 472
Hsp92I	GRCGYC	2 cut(s)	28, 78
Hsp92II	CATG	3 cut(s)	205, 215, 384
Kzo9I	GATC	5 cut(s)	72, 258, 358, 526, 641
LmnI	GCTCC	2 cut(s)	92, 703
Lsp1109I	GCAGC	3 cut(s)	265, 299, 702
LweI	GCATC	1 cut(s)	663
MaeI	CTAG	2 cut(s)	252, 443
MaeII	ACGT	3 cut(s)	64, 78, 472
MaeIII	GTNAC	3 cut(s)	65, 407, 647
MalI	GATC	5 cut(s)	74, 260, 360, 528, 643
MbiI	CCGCTC	1 cut(s)	512
MboI	GATC	5 cut(s)	72, 258, 358, 526, 641
MboII	GAAGA	2 cut(s)	29, 470
MfeI	CAATTG	2 cut(s)	762, 769
MflI	RGATCY	2 cut(s)	258, 641
MhlI	GDGCHC	2 cut(s)	442, 708
MluCI	AATT	4 cut(s)	345, 724, 762, 769
MlyI	GAGTC	1 cut(s)	470
MnlI	CCTC	7 cut(s)	135, 298, 304, 415, 418, 508, 602
MseI	TTAA	2 cut(s)	173, 729
MslI	CAYNNNNRTG	1 cut(s)	347
MunI	CAATTG	2 cut(s)	762, 769
MwoI	GCNNNNNNNGC	6 cut(s)	284, 287, 296, 437, 493, 712
NdeII	GATC	5 cut(s)	72, 258, 358, 526, 641
NlaIII	CATG	3 cut(s)	205, 215, 384
NlaIV	GGNNCC	1 cut(s)	260
NmuCI	GTSAC	2 cut(s)	65, 647
NspI	RCATGY	1 cut(s)	215
PceI	AGGCCT	1 cut(s)	190
PciI	ACATGT	1 cut(s)	211
PcsI	WCGNNNNNNNCGW	1 cut(s)	75
PfeI	GAWTC	1 cut(s)	575
PflFI	GACNNNGTC	1 cut(s)	80
PkrI	GCNGC	4 cut(s)	280, 289, 548, 717
PleI	GAGTC	1 cut(s)	469
PmaCI	CACGTG	1 cut(s)	65
PmlI	CACGTG	1 cut(s)	65
PpsI	GAGTC	1 cut(s)	469
Ppu21I	YACGTR	1 cut(s)	65
PscI	ACATGT	1 cut(s)	211
Psp124BI	GAGCTC	2 cut(s)	442, 708
PspCI	CACGTG	1 cut(s)	65
PspN4I	GGNNCC	1 cut(s)	260
PspPI	GGNCC	2 cut(s)	4, 495
PsuI	RGATCY	2 cut(s)	258, 641
PsyI	GACNNNGTC	1 cut(s)	80
RsaI	GTAC	2 cut(s)	244, 329
RsaNI	GTAC	2 cut(s)	243, 328
RseI	CAYNNNNRTG	1 cut(s)	347
SacI	GAGCTC	2 cut(s)	442, 708
SaqAI	TTAA	2 cut(s)	173, 729
SatI	GCNGC	4 cut(s)	279, 288, 547, 716
Sau3AI	GATC	5 cut(s)	72, 258, 358, 526, 641
Sau96I	GGNCC	2 cut(s)	4, 495
ScaI	AGTACT	1 cut(s)	244
SchI	GAGTC	1 cut(s)	470
SduI	GDGCHC	2 cut(s)	442, 708
SfaNI	GCATC	1 cut(s)	663
SfcI	CTRYAG	1 cut(s)	55
SinI	GGWCC	1 cut(s)	4
SmiMI	CAYNNNNRTG	1 cut(s)	347
Sse9I	AATT	4 cut(s)	345, 724, 762, 769
SseBI	AGGCCT	1 cut(s)	190
SsiI	CCGC	3 cut(s)	20, 512, 547
SspMI	CTAG	2 cut(s)	252, 443
SstI	GAGCTC	2 cut(s)	442, 708
StuI	AGGCCT	1 cut(s)	190
StyI	CCWWGG	2 cut(s)	300, 522
TaaI	ACNGT	4 cut(s)	94, 103, 242, 266
TaiI	ACGT	3 cut(s)	67, 81, 475
TaqI	TCGA	1 cut(s)	75
TasI	AATT	4 cut(s)	345, 724, 762, 769
TatI	WGTACW	2 cut(s)	242, 327
TauI	GCSGC	1 cut(s)	549
TfiI	GAWTC	1 cut(s)	575
Tru1I	TTAA	2 cut(s)	173, 729
Tru9I	TTAA	2 cut(s)	173, 729
TscAI	CASTG	1 cut(s)	271
TseFI	GTSAC	2 cut(s)	65, 647
TseI	GCWGC	3 cut(s)	278, 287, 715
Tsp45I	GTSAC	2 cut(s)	65, 647
TspDTI	ATGAA	2 cut(s)	190, 377
TspRI	CASTG	1 cut(s)	271
Tth111I	GACNNNGTC	1 cut(s)	80
VpaK11BI	GGWCC	1 cut(s)	4
XapI	RAATTY	1 cut(s)	724
XceI	RCATGY	1 cut(s)	215
XspI	CTAG	2 cut(s)	252, 443
ZraI	GACGTC	1 cut(s)	79
ZrmI	AGTACT	1 cut(s)	244

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.