Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001366

Physical Location & Seq

Genomic Coordinates Forward (+)

2620114 .. 2623051

Gene Structure 2938 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ22131

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGCGTTTCGTTTGGAGACGAATACAGGCTGACTTTTTGTTCTGTGTATTTGTGAAGGATGTGTGGAAAGAATACACAGGTTGGCCTTTAAATAATATGGAGAGGTCTTACAAGTTCATGGTGAAACATGTTCAGCTATGGAAGGTTGCATTTCACAGTACTTCTCCTAGATGGATCCACAGTGTCTATCTTGCTGCCATTGCAGCCTACTATGCCAAGTTTTATCCGAGGGTCAATAGGTGTTACTGCCCATCGGAGGAGGTAGCTAAAAGAGCTCTAGTATATGGCCTTGAAGAGTCCCAAATACGTGTTTTTGGCTTGCCCATCAGGCCCTCTTTTGCCCGAGCGGTTATCTCCAAGGTTATAGGATTTGAGACACAAATGGAGAAATGGATGGGATCTTGTGACTGCATCATAACAAAAGTAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006643 GO:0006664 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008194 GO:0008378 GO:0009267 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009605 GO:0009707 GO:0009941 GO:0009987 GO:0009991 GO:0016020 GO:0016036 GO:0016740 GO:0016757 GO:0016758 GO:0019374 GO:0019752 GO:0019867 GO:0031090 GO:0031667 GO:0031668 GO:0031669 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032787 GO:0033554 GO:0035250 GO:0042170 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0071496 GO:0071704 GO:0098588 GO:0098805 GO:1901135 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00561 ko01100 map00561 map01100

Pfam Domains

Protein Families

Glyco_tran_28_C MGDG_synth

Protein Analysis

143

Amino Acids

16.98

Weight (kDa)

9.58

Isoelectric Point (pI)

47.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MGDG_synth	PF06925	16 - 73	7.9e-12	Monogalactosyldiacylglycerol (MGDG) synthase
MGDG_synth	PF06925	76 - 109	7.8e-07	Monogalactosyldiacylglycerol (MGDG) synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001366)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G11810 AT2G11810 AT2G11810 AT2G11810 AT5G20410
fragaria_vesca	FvH4_1g02220 FvH4_1g02220 FvH4_1g02220 FvH4_1g21680
malus_domestica	MD02G1020400.v1.1 MD15G1163200.v1.1
prunus_persica	Prupe.7G251400_v2.0.a1
pyrus_communis	pycom02g01790 pycom15g14680
rosa_chinensis	RchiOBHm_Chr2g0087331 RchiOBHm_Chr3g0481741 RchiOBHm_Chr4g0421821 RchiOBHm_Chr6g0246901
rosa_laevigata	RLG00000003836 RLG00000015857
rosa_multiflora	Rmu_co8187728.1_g000001 Rmu_co8222200.1_g000001 Rmu_sc0000540.1_g000032 Rmu_sc0003367.1_g000024 Rmu_sc0006064.1_g000001 Rmu_sc0007105.1_g000003 Rmu_sc0016592.1_g000001 Rmu_sc0037595.1_g000001
rosa_roxburghii	Rroxscaffold_1G00028410 Rroxscaffold_2G00111080 Rroxscaffold_2G00153680 Rroxscaffold_3G00242830 Rroxscaffold_4G00276430 Rroxscaffold_4G00300210 Rroxscaffold_7G00214190
rosa_rugosa	Rorug01G0474200
rosa_samantha	Rh1CG122800 Rh2AG027800 Rh2AG631400 Rh2BG027300 Rh2BG300600 Rh2CG028100 Rh2DG027900 Rh4BG234200 Rh5CG220000 Rh6BG190700 Rh6CG106700 Rh6CG108200 Rh6DG097200 Rh6DG098600 Rh7CG224800
rosa_wichuraiana	Rw1G013320 Rw2G002200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	347
AciI	CCGC	1 cut(s)	347
AclWI	GGATC	3 cut(s)	169, 182, 406
AfaI	GTAC	1 cut(s)	160
AfiI	CCNNNNNNNGG	1 cut(s)	256
AflIII	ACRYGT	2 cut(s)	127, 307
AgsI	TTSAA	1 cut(s)	293
AluBI	AGCT	3 cut(s)	136, 266, 275
AluI	AGCT	3 cut(s)	136, 266, 275
Alw21I	GWGCWC	1 cut(s)	277
Alw26I	GTCTC	2 cut(s)	10, 368
AlwI	GGATC	3 cut(s)	169, 182, 406
Ama87I	CYCGRG	1 cut(s)	342
AoxI	GGCC	3 cut(s)	83, 286, 329
ApeKI	GCWGC	2 cut(s)	194, 203
AspS9I	GGNCC	1 cut(s)	330
AsuHPI	GGTGA	1 cut(s)	133
AvaI	CYCGRG	1 cut(s)	342
BamHI	GGATCC	1 cut(s)	174
BanII	GRGCYC	1 cut(s)	277
Bbv12I	GWGCWC	1 cut(s)	277
BbvI	GCAGC	2 cut(s)	181, 215
BccI	CCATC	4 cut(s)	165, 259, 332, 388
BcoDI	GTCTC	2 cut(s)	10, 368
BfaI	CTAG	2 cut(s)	168, 278
BglI	GCCNNNNNGGC	1 cut(s)	328
BisI	GCNGC	2 cut(s)	195, 204
BlsI	GCNGC	2 cut(s)	196, 205
BmcAI	AGTACT	1 cut(s)	160
BmeT110I	CYCGRG	1 cut(s)	342
BmgT120I	GGNCC	1 cut(s)	330
BmiI	GGNNCC	1 cut(s)	176
BmsI	GCATC	1 cut(s)	420
BsaAI	YACGTR	1 cut(s)	308
BsaJI	CCNNGG	2 cut(s)	227, 357
Bsc4I	CCNNNNNNNGG	1 cut(s)	256
Bse3DI	GCAATG	1 cut(s)	198
BseDI	CCNNGG	2 cut(s)	227, 357
BseGI	GGATG	2 cut(s)	64, 399
BseLI	CCNNNNNNNGG	1 cut(s)	256
BseMI	GCAATG	1 cut(s)	198
BseRI	GAGGAG	1 cut(s)	272
BseXI	GCAGC	2 cut(s)	181, 215
BshFI	GGCC	3 cut(s)	85, 288, 331
BsiHKAI	GWGCWC	1 cut(s)	277
BsiHKCI	CYCGRG	1 cut(s)	342
BslFI	GGGAC	1 cut(s)	283
BslI	CCNNNNNNNGG	1 cut(s)	256
BsmAI	GTCTC	2 cut(s)	10, 368
BsmBI	CGTCTC	1 cut(s)	10
BsmFI	GGGAC	1 cut(s)	283
BsnI	GGCC	3 cut(s)	85, 288, 331
BsoBI	CYCGRG	1 cut(s)	342
Bsp1286I	GDGCHC	1 cut(s)	277
Bsp143I	GATC	2 cut(s)	174, 398
BspACI	CCGC	1 cut(s)	347
BspANI	GGCC	3 cut(s)	85, 288, 331
BspLI	GGNNCC	1 cut(s)	176
BspPI	GGATC	3 cut(s)	169, 182, 406
BsrBI	CCGCTC	1 cut(s)	347
BsrDI	GCAATG	1 cut(s)	198
BssECI	CCNNGG	2 cut(s)	227, 357
BssMI	GATC	2 cut(s)	174, 398
BssT1I	CCWWGG	1 cut(s)	357
Bst4CI	ACNGT	2 cut(s)	158, 182
Bst6I	CTCTTC	1 cut(s)	288
BstBAI	YACGTR	1 cut(s)	308
BstC8I	GCNNGC	1 cut(s)	320
BstF5I	GGATG	2 cut(s)	64, 399
BstKTI	GATC	2 cut(s)	177, 401
BstMAI	GTCTC	2 cut(s)	10, 368
BstMBI	GATC	2 cut(s)	174, 398
BstMWI	GCNNNNNNNGC	5 cut(s)	200, 203, 212, 272, 328
BstNSI	RCATGY	1 cut(s)	131
BstV1I	GCAGC	2 cut(s)	181, 215
BstX2I	RGATCY	2 cut(s)	174, 398
BstYI	RGATCY	2 cut(s)	174, 398
BsuRI	GGCC	3 cut(s)	85, 288, 331
BtsCI	GGATG	2 cut(s)	64, 399
BtsIMutI	CAGTG	1 cut(s)	187
Cac8I	GCNNGC	1 cut(s)	320
Cfr13I	GGNCC	1 cut(s)	330
Csp6I	GTAC	1 cut(s)	159
CviAII	CATG	2 cut(s)	118, 128
CviJI	RGCY	9 cut(s)	29, 85, 136, 206, 266, 275, 288, 318, 331
CviKI_1	RGCY	9 cut(s)	29, 85, 136, 206, 266, 275, 288, 318, 331
CviQI	GTAC	1 cut(s)	159
DpnI	GATC	2 cut(s)	176, 400
DpnII	GATC	2 cut(s)	174, 398
DraI	TTTAAA	1 cut(s)	90
Eam1104I	CTCTTC	1 cut(s)	288
EarI	CTCTTC	1 cut(s)	288
Ecl136II	GAGCTC	1 cut(s)	275
Eco130I	CCWWGG	1 cut(s)	357
Eco24I	GRGCYC	1 cut(s)	277
Eco53kI	GAGCTC	1 cut(s)	275
Eco88I	CYCGRG	1 cut(s)	342
EcoICRI	GAGCTC	1 cut(s)	275
EcoO109I	RGGNCCY	1 cut(s)	330
EcoT14I	CCWWGG	1 cut(s)	357
EcoT38I	GRGCYC	1 cut(s)	277
ErhI	CCWWGG	1 cut(s)	357
Esp3I	CGTCTC	1 cut(s)	10
FaeI	CATG	2 cut(s)	121, 131
FaiI	YATR	9 cut(s)	98, 119, 129, 139, 213, 283, 285, 365, 416
FaqI	GGGAC	1 cut(s)	283
FatI	CATG	2 cut(s)	117, 127
Fnu4HI	GCNGC	2 cut(s)	195, 204
FokI	GGATG	2 cut(s)	71, 406
FriOI	GRGCYC	1 cut(s)	277
Fsp4HI	GCNGC	2 cut(s)	195, 204
FspBI	CTAG	2 cut(s)	168, 278
GluI	GCNGC	2 cut(s)	195, 204
HaeIII	GGCC	3 cut(s)	85, 288, 331
Hin1II	CATG	2 cut(s)	121, 131
HinfI	GANTC	1 cut(s)	296
HphI	GGTGA	1 cut(s)	133
Hpy188I	TCNGA	2 cut(s)	228, 256
HpyAV	CCTTC	2 cut(s)	49, 136
HpyCH4III	ACNGT	2 cut(s)	158, 182
HpyCH4IV	ACGT	1 cut(s)	307
HpyCH4V	TGCA	3 cut(s)	149, 203, 411
HpyF10VI	GCNNNNNNNGC	5 cut(s)	200, 203, 212, 272, 328
HpySE526I	ACGT	1 cut(s)	307
Hsp92II	CATG	2 cut(s)	121, 131
Kzo9I	GATC	2 cut(s)	174, 398
LpnPI	CCDG	3 cut(s)	11, 63, 313
Lsp1109I	GCAGC	2 cut(s)	181, 215
LweI	GCATC	1 cut(s)	420
MaeI	CTAG	2 cut(s)	168, 278
MaeII	ACGT	1 cut(s)	307
MaeIII	GTNAC	2 cut(s)	242, 404
MalI	GATC	2 cut(s)	176, 400
MbiI	CCGCTC	1 cut(s)	347
MboI	GATC	2 cut(s)	174, 398
MboII	GAAGA	1 cut(s)	305
MflI	RGATCY	2 cut(s)	174, 398
MhlI	GDGCHC	1 cut(s)	277
MluCI	AATT	1 cut(s)	427
MlyI	GAGTC	1 cut(s)	305
MnlI	CCTC	5 cut(s)	96, 222, 250, 253, 343
MseI	TTAA	1 cut(s)	89
MwoI	GCNNNNNNNGC	5 cut(s)	200, 203, 212, 272, 328
NdeII	GATC	2 cut(s)	174, 398
NlaIII	CATG	2 cut(s)	121, 131
NlaIV	GGNNCC	1 cut(s)	176
NmuCI	GTSAC	1 cut(s)	404
NspI	RCATGY	1 cut(s)	131
PciI	ACATGT	1 cut(s)	127
PkrI	GCNGC	2 cut(s)	196, 205
PleI	GAGTC	1 cut(s)	304
PpsI	GAGTC	1 cut(s)	304
Ppu21I	YACGTR	1 cut(s)	308
PscI	ACATGT	1 cut(s)	127
Psp124BI	GAGCTC	1 cut(s)	277
PspN4I	GGNNCC	1 cut(s)	176
PspPI	GGNCC	1 cut(s)	330
PsuI	RGATCY	2 cut(s)	174, 398
RsaI	GTAC	1 cut(s)	160
RsaNI	GTAC	1 cut(s)	159
SacI	GAGCTC	1 cut(s)	277
SaqAI	TTAA	1 cut(s)	89
SatI	GCNGC	2 cut(s)	195, 204
Sau3AI	GATC	2 cut(s)	174, 398
Sau96I	GGNCC	1 cut(s)	330
ScaI	AGTACT	1 cut(s)	160
SchI	GAGTC	1 cut(s)	305
SduI	GDGCHC	1 cut(s)	277
SfaNI	GCATC	1 cut(s)	420
Sse9I	AATT	1 cut(s)	427
SsiI	CCGC	1 cut(s)	347
SspMI	CTAG	2 cut(s)	168, 278
SstI	GAGCTC	1 cut(s)	277
StyI	CCWWGG	1 cut(s)	357
TaaI	ACNGT	2 cut(s)	158, 182
TaiI	ACGT	1 cut(s)	310
TasI	AATT	1 cut(s)	427
TatI	WGTACW	1 cut(s)	158
Tru1I	TTAA	1 cut(s)	89
Tru9I	TTAA	1 cut(s)	89
TscAI	CASTG	1 cut(s)	187
TseFI	GTSAC	1 cut(s)	404
TseI	GCWGC	2 cut(s)	194, 203
Tsp45I	GTSAC	1 cut(s)	404
TspDTI	ATGAA	1 cut(s)	106
TspRI	CASTG	1 cut(s)	187
XceI	RCATGY	1 cut(s)	131
XspI	CTAG	2 cut(s)	168, 278
ZrmI	AGTACT	1 cut(s)	160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.