Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001366

Physical Location & Seq

Genomic Coordinates Reverse (-)

85718258 .. 85731210

Gene Structure 12953 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG631400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGGTCCCATACTATATCACTTTGCAGATGTATATGGACAAGGAGATGATATGTCTATTGAAATGACTTTGGAGGATGTGAAGAGGGTTGCTTTGCATTATGGATTTCATATAGAGGAGGAAAAGACCATTGAGACAACATACACTACAAATCCCAGATCAATGATGCAAAACCGATACTATGCTGCTTTTTGGTCAATGAGAAAGAGATCAACAAGAATAGAGCACAACACTCCTCAAGTATTTGTGAAGGATGTGCGGAAAGAGTACACAGGTTGGCCTTTAAATAATATGGAGAGGTCTTACAAGTTCATGGTGAAACATGTTCAGCTATGGAAGGTTGCACTTCACAGTACTTCTCCTAGATGGATCCACAGTGTCTATCTTGCTGCCATAGCCTACTATGCCAAAGACCTTAGCTTTAACAAGCTATCAGGACAGATCCCAAATAGCTTTTGCAGTGAAGTTTACTTCAGAGTTATGCTAATGAGGTACAAAGCTGCAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00340 map00340

Pfam Domains

Protein Families

N2227

Protein Analysis

169

Amino Acids

20.07

Weight (kDa)

9.34

Isoelectric Point (pI)

52.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CARME	PF07942	1 - 70	6.5e-20	Carnosine N-methyltransferase
MGDG_synth	PF06925	76 - 136	1e-10	Monogalactosyldiacylglycerol (MGDG) synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001366)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G11810 AT2G11810 AT2G11810 AT2G11810 AT5G20410
fragaria_vesca	FvH4_1g02220 FvH4_1g02220 FvH4_1g02220 FvH4_1g21680
malus_domestica	MD02G1020400.v1.1 MD15G1163200.v1.1
prunus_persica	Prupe.7G251400_v2.0.a1
pyrus_communis	pycom02g01790 pycom15g14680
rosa_chinensis	RchiOBHm_Chr2g0087331 RchiOBHm_Chr3g0481741 RchiOBHm_Chr4g0421821 RchiOBHm_Chr6g0246901
rosa_laevigata	RLG00000003836 RLG00000015857
rosa_multiflora	Rmu_co8187728.1_g000001 Rmu_co8222200.1_g000001 Rmu_sc0000540.1_g000032 Rmu_sc0003367.1_g000024 Rmu_sc0006064.1_g000001 Rmu_sc0007105.1_g000003 Rmu_sc0016592.1_g000001 Rmu_sc0037595.1_g000001
rosa_roxburghii	Rroxscaffold_1G00028410 Rroxscaffold_2G00111080 Rroxscaffold_2G00153680 Rroxscaffold_3G00242830 Rroxscaffold_4G00276430 Rroxscaffold_4G00300210 Rroxscaffold_7G00214190
rosa_rugosa	Rorug01G0474200
rosa_samantha	Rh1CG122800 Rh2AG027800 Rh2AG631400 Rh2BG027300 Rh2BG300600 Rh2CG028100 Rh2DG027900 Rh4BG234200 Rh5CG220000 Rh6BG190700 Rh6CG106700 Rh6CG108200 Rh6DG097200 Rh6DG098600 Rh7CG224800
rosa_wichuraiana	Rw1G013320 Rw2G002200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	259
AclWI	GGATC	3 cut(s)	364, 377, 436
AcuI	CTGAAG	1 cut(s)	457
AfaI	GTAC	3 cut(s)	269, 355, 494
AflIII	ACRYGT	1 cut(s)	322
AgsI	TTSAA	1 cut(s)	62
AluBI	AGCT	5 cut(s)	331, 420, 430, 453, 500
AluI	AGCT	5 cut(s)	331, 420, 430, 453, 500
Alw21I	GWGCWC	1 cut(s)	228
Alw26I	GTCTC	1 cut(s)	128
AlwI	GGATC	3 cut(s)	364, 377, 436
AoxI	GGCC	1 cut(s)	278
ApeKI	GCWGC	3 cut(s)	185, 389, 500
AspS9I	GGNCC	1 cut(s)	5
AsuHPI	GGTGA	1 cut(s)	328
AvaII	GGWCC	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	369
Bbv12I	GWGCWC	1 cut(s)	228
BbvI	GCAGC	3 cut(s)	172, 376, 487
BccI	CCATC	1 cut(s)	360
BcoDI	GTCTC	1 cut(s)	128
BfaI	CTAG	1 cut(s)	363
BfmI	CTRYAG	1 cut(s)	501
BisI	GCNGC	3 cut(s)	186, 390, 501
BlsI	GCNGC	3 cut(s)	187, 391, 502
BmcAI	AGTACT	1 cut(s)	355
Bme18I	GGWCC	1 cut(s)	5
BmgT120I	GGNCC	1 cut(s)	5
BmiI	GGNNCC	3 cut(s)	6, 7, 371
BmsI	GCATC	1 cut(s)	156
Bpu10I	CCTNAGC	1 cut(s)	416
BpuEI	CTTGAG	1 cut(s)	222
BseGI	GGATG	2 cut(s)	82, 259
BseRI	GAGGAG	2 cut(s)	131, 225
BseXI	GCAGC	3 cut(s)	172, 376, 487
BshFI	GGCC	1 cut(s)	280
BsiHKAI	GWGCWC	1 cut(s)	228
BsmAI	GTCTC	1 cut(s)	128
BsnI	GGCC	1 cut(s)	280
Bsp1286I	GDGCHC	1 cut(s)	228
Bsp143I	GATC	4 cut(s)	158, 209, 369, 441
BspACI	CCGC	1 cut(s)	259
BspANI	GGCC	1 cut(s)	280
BspLI	GGNNCC	3 cut(s)	6, 7, 371
BspMAI	CTGCAG	1 cut(s)	505
BspPI	GGATC	3 cut(s)	364, 377, 436
BssMI	GATC	4 cut(s)	158, 209, 369, 441
Bst4CI	ACNGT	2 cut(s)	353, 377
Bst6I	CTCTTC	1 cut(s)	77
BstDEI	CTNAG	1 cut(s)	416
BstF5I	GGATG	2 cut(s)	82, 259
BstKTI	GATC	4 cut(s)	161, 212, 372, 444
BstMAI	GTCTC	1 cut(s)	128
BstMBI	GATC	4 cut(s)	158, 209, 369, 441
BstMWI	GCNNNNNNNGC	2 cut(s)	395, 404
BstNSI	RCATGY	1 cut(s)	326
BstSFI	CTRYAG	1 cut(s)	501
BstV1I	GCAGC	3 cut(s)	172, 376, 487
BstX2I	RGATCY	2 cut(s)	369, 441
BstYI	RGATCY	2 cut(s)	369, 441
BsuRI	GGCC	1 cut(s)	280
BtsCI	GGATG	2 cut(s)	82, 259
BtsI	GCAGTG	2 cut(s)	466, 510
BtsIMutI	CAGTG	3 cut(s)	382, 466, 510
Cfr13I	GGNCC	1 cut(s)	5
Csp6I	GTAC	3 cut(s)	268, 354, 493
CviAII	CATG	2 cut(s)	313, 323
CviJI	RGCY	7 cut(s)	280, 331, 398, 420, 430, 453, 500
CviKI_1	RGCY	7 cut(s)	280, 331, 398, 420, 430, 453, 500
CviQI	GTAC	3 cut(s)	268, 354, 493
DdeI	CTNAG	1 cut(s)	416
DpnI	GATC	4 cut(s)	160, 211, 371, 443
DpnII	GATC	4 cut(s)	158, 209, 369, 441
DraI	TTTAAA	1 cut(s)	285
Eam1104I	CTCTTC	1 cut(s)	77
EarI	CTCTTC	1 cut(s)	77
Eco47I	GGWCC	1 cut(s)	5
Eco57I	CTGAAG	1 cut(s)	457
EcoO109I	RGGNCCY	1 cut(s)	5
FaeI	CATG	2 cut(s)	316, 326
FatI	CATG	2 cut(s)	312, 322
Fnu4HI	GCNGC	3 cut(s)	186, 390, 501
FokI	GGATG	2 cut(s)	89, 266
Fsp4HI	GCNGC	3 cut(s)	186, 390, 501
FspBI	CTAG	1 cut(s)	363
GluI	GCNGC	3 cut(s)	186, 390, 501
HaeIII	GGCC	1 cut(s)	280
Hin1II	CATG	2 cut(s)	316, 326
HphI	GGTGA	1 cut(s)	328
Hpy166II	GTNNAC	2 cut(s)	270, 469
Hpy188I	TCNGA	1 cut(s)	476
Hpy188III	TCNNGA	1 cut(s)	435
Hpy8I	GTNNAC	2 cut(s)	270, 469
HpyAV	CCTTC	2 cut(s)	244, 331
HpyCH4III	ACNGT	2 cut(s)	353, 377
HpyCH4V	TGCA	6 cut(s)	26, 97, 169, 344, 459, 503
HpyF10VI	GCNNNNNNNGC	2 cut(s)	395, 404
HpyF3I	CTNAG	1 cut(s)	416
Hsp92II	CATG	2 cut(s)	316, 326
KflI	GGGWCCC	1 cut(s)	5
Kzo9I	GATC	4 cut(s)	158, 209, 369, 441
LpnPI	CCDG	3 cut(s)	169, 258, 420
Lsp1109I	GCAGC	3 cut(s)	172, 376, 487
LweI	GCATC	1 cut(s)	156
MaeI	CTAG	1 cut(s)	363
MalI	GATC	4 cut(s)	160, 211, 371, 443
MboI	GATC	4 cut(s)	158, 209, 369, 441
MboII	GAAGA	1 cut(s)	94
MflI	RGATCY	2 cut(s)	369, 441
MhlI	GDGCHC	1 cut(s)	228
MnlI	CCTC	7 cut(s)	67, 78, 109, 112, 246, 291, 483
MseI	TTAA	2 cut(s)	284, 423
MwoI	GCNNNNNNNGC	2 cut(s)	395, 404
NdeII	GATC	4 cut(s)	158, 209, 369, 441
NlaIII	CATG	2 cut(s)	316, 326
NlaIV	GGNNCC	3 cut(s)	6, 7, 371
NspI	RCATGY	1 cut(s)	326
PciI	ACATGT	1 cut(s)	322
PkrI	GCNGC	3 cut(s)	187, 391, 502
PpuMI	RGGWCCY	1 cut(s)	5
PscI	ACATGT	1 cut(s)	322
Psp5II	RGGWCCY	1 cut(s)	5
PspN4I	GGNNCC	3 cut(s)	6, 7, 371
PspPI	GGNCC	1 cut(s)	5
PspPPI	RGGWCCY	1 cut(s)	5
PstI	CTGCAG	1 cut(s)	505
PsuI	RGATCY	2 cut(s)	369, 441
RsaI	GTAC	3 cut(s)	269, 355, 494
RsaNI	GTAC	3 cut(s)	268, 354, 493
SaqAI	TTAA	2 cut(s)	284, 423
SatI	GCNGC	3 cut(s)	186, 390, 501
Sau3AI	GATC	4 cut(s)	158, 209, 369, 441
Sau96I	GGNCC	1 cut(s)	5
ScaI	AGTACT	1 cut(s)	355
SduI	GDGCHC	1 cut(s)	228
SfaNI	GCATC	1 cut(s)	156
SfcI	CTRYAG	1 cut(s)	501
SinI	GGWCC	1 cut(s)	5
SmlI	CTYRAG	1 cut(s)	237
SmoI	CTYRAG	1 cut(s)	237
SsiI	CCGC	1 cut(s)	259
SspMI	CTAG	1 cut(s)	363
TaaI	ACNGT	2 cut(s)	353, 377
TatI	WGTACW	2 cut(s)	267, 353
Tru1I	TTAA	2 cut(s)	284, 423
Tru9I	TTAA	2 cut(s)	284, 423
TscAI	CASTG	3 cut(s)	382, 466, 510
TseI	GCWGC	3 cut(s)	185, 389, 500
TspDTI	ATGAA	2 cut(s)	98, 301
TspRI	CASTG	3 cut(s)	382, 466, 510
VpaK11BI	GGWCC	1 cut(s)	5
XceI	RCATGY	1 cut(s)	326
XspI	CTAG	1 cut(s)	363
ZrmI	AGTACT	1 cut(s)	355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.