Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0001366

Physical Location & Seq

Genomic Coordinates Forward (+)

39988052 .. 39989706

Gene Structure 1655 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG234200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGATCCACAGTGTCTATCTTGCTGCAATTGCAGCCTACTATGCCAAGTAAAATCTCTCACCTTCTTCCGCTTTTCGCTTTCAATGGAGGTGGAGGCTGGCCTAATGGAGTACAAGCCAGACATCATAATTAGTGTTCATCCTTTGATGCAACATATTCCTCTTTGGGTTCTCAAATGGCAAGGACTTCAGAAGAAAGTGATTTTTGTGACAGTGATTACTGATCTCAACACTTGCCATCCTACATGGTTTCATCCGGGGGTCAATAGGTGCTACTGCCCATCGGAGGAGGTAGCTAAAAGGGCTCTAGTAGATGGCCTTGAAGAGTCCCAAATACGTGTTTTTGGCTTGCCCATCAGGCCCTCTTTTTCCCGAGCGGTTATCTCCAAGGCTGGTCCTGGCACAATCGCCGAGGCATTGATCAGAGGGCTTCCTATTATTCTCAATGACTACATTCCTGGACAAGAAAAGGGCAATGTGCCATATGTGGTAGACAATGGTGCTGGTGTCTTCACTAGAAGCCCTAAGGAAACAGCCAGGATTGTGGCAGAATGGTTCAGCACCAAGCAGTTTTTTTTTCGTAATTTCATTACTATTGTAATGTTCGGTGCTATTGGTACATTAGTGTCCTGCACCATCATAGCATTTGGTACGTCTCACAACTCTCTAGCTAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006643 GO:0006664 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008194 GO:0008378 GO:0009267 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009605 GO:0009707 GO:0009941 GO:0009987 GO:0009991 GO:0016020 GO:0016036 GO:0016740 GO:0016757 GO:0016758 GO:0019374 GO:0019752 GO:0019867 GO:0031090 GO:0031667 GO:0031668 GO:0031669 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032787 GO:0033554 GO:0035250 GO:0042170 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0071496 GO:0071704 GO:0098588 GO:0098805 GO:1901135 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00561 ko01100 map00561 map01100

Pfam Domains

Protein Families

Glyco_tran_28_C MGDG_synth

Protein Analysis

225

Amino Acids

25.09

Weight (kDa)

8.59

Isoelectric Point (pI)

31.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MGDG_synth	PF06925	25 - 119	2.6e-37	Monogalactosyldiacylglycerol (MGDG) synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001366)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G11810 AT2G11810 AT2G11810 AT2G11810 AT5G20410
fragaria_vesca	FvH4_1g02220 FvH4_1g02220 FvH4_1g02220 FvH4_1g21680
malus_domestica	MD02G1020400.v1.1 MD15G1163200.v1.1
prunus_persica	Prupe.7G251400_v2.0.a1
pyrus_communis	pycom02g01790 pycom15g14680
rosa_chinensis	RchiOBHm_Chr2g0087331 RchiOBHm_Chr3g0481741 RchiOBHm_Chr4g0421821 RchiOBHm_Chr6g0246901
rosa_laevigata	RLG00000003836 RLG00000015857
rosa_multiflora	Rmu_co8187728.1_g000001 Rmu_co8222200.1_g000001 Rmu_sc0000540.1_g000032 Rmu_sc0003367.1_g000024 Rmu_sc0006064.1_g000001 Rmu_sc0007105.1_g000003 Rmu_sc0016592.1_g000001 Rmu_sc0037595.1_g000001
rosa_roxburghii	Rroxscaffold_1G00028410 Rroxscaffold_2G00111080 Rroxscaffold_2G00153680 Rroxscaffold_3G00242830 Rroxscaffold_4G00276430 Rroxscaffold_4G00300210 Rroxscaffold_7G00214190
rosa_rugosa	Rorug01G0474200
rosa_samantha	Rh1CG122800 Rh2AG027800 Rh2AG631400 Rh2BG027300 Rh2BG300600 Rh2CG028100 Rh2DG027900 Rh4BG234200 Rh5CG220000 Rh6BG190700 Rh6CG106700 Rh6CG108200 Rh6DG097200 Rh6DG098600 Rh7CG224800
rosa_wichuraiana	Rw1G013320 Rw2G002200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	377
AccI	GTMKAC	1 cut(s)	492
AciI	CCGC	2 cut(s)	70, 377
AclWI	GGATC	1 cut(s)	12
AcuI	CTGAAG	1 cut(s)	173
AfaI	GTAC	3 cut(s)	113, 619, 652
AfiI	CCNNNNNNNGG	1 cut(s)	286
AflIII	ACRYGT	1 cut(s)	337
AgsI	TTSAA	2 cut(s)	84, 323
AjnI	CCWGG	3 cut(s)	397, 457, 536
AluBI	AGCT	2 cut(s)	296, 671
AluI	AGCT	2 cut(s)	296, 671
Alw26I	GTCTC	1 cut(s)	660
AlwI	GGATC	1 cut(s)	12
Ama87I	CYCGRG	1 cut(s)	372
AoxI	GGCC	3 cut(s)	100, 316, 359
ApeKI	GCWGC	2 cut(s)	24, 33
AspS9I	GGNCC	2 cut(s)	360, 395
AsuC2I	CCSGG	1 cut(s)	258
AsuHPI	GGTGA	1 cut(s)	52
AvaI	CYCGRG	1 cut(s)	372
AvaII	GGWCC	1 cut(s)	395
AxyI	CCTNAGG	1 cut(s)	525
BaeI	ACNNNNGTAYC	2 cut(s)	609, 642
BamHI	GGATCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	307
BbsI	GAAGAC	1 cut(s)	502
BbvI	GCAGC	2 cut(s)	11, 45
BccI	CCATC	5 cut(s)	246, 289, 308, 362, 644
BciT130I	CCWGG	3 cut(s)	399, 459, 538
BclI	TGATCA	1 cut(s)	420
BcnI	CCSGG	1 cut(s)	258
BcoDI	GTCTC	1 cut(s)	660
BfaI	CTAG	4 cut(s)	308, 516, 668, 672
BglI	GCCNNNNNGGC	1 cut(s)	358
BisI	GCNGC	2 cut(s)	25, 34
BlsI	GCNGC	2 cut(s)	26, 35
Bme1390I	CCNGG	4 cut(s)	258, 399, 459, 538
Bme18I	GGWCC	1 cut(s)	395
BmeT110I	CYCGRG	1 cut(s)	372
BmgT120I	GGNCC	2 cut(s)	360, 395
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	4 cut(s)	258, 399, 459, 538
BmsI	GCATC	1 cut(s)	138
BpiI	GAAGAC	1 cut(s)	502
BpuMI	CCSGG	1 cut(s)	258
BsaAI	YACGTR	1 cut(s)	338
BsaJI	CCNNGG	3 cut(s)	257, 387, 411
Bsc4I	CCNNNNNNNGG	1 cut(s)	286
Bse21I	CCTNAGG	1 cut(s)	525
Bse3DI	GCAATG	1 cut(s)	481
BseBI	CCWGG	3 cut(s)	399, 459, 538
BseDI	CCNNGG	3 cut(s)	257, 387, 411
BseGI	GGATG	3 cut(s)	139, 238, 253
BseLI	CCNNNNNNNGG	1 cut(s)	286
BseMI	GCAATG	1 cut(s)	481
BseRI	GAGGAG	1 cut(s)	302
BseXI	GCAGC	2 cut(s)	11, 45
BsgI	GTGCAG	1 cut(s)	616
BshFI	GGCC	3 cut(s)	102, 318, 361
BsiHKCI	CYCGRG	1 cut(s)	372
BsiSI	CCGG	1 cut(s)	257
BslFI	GGGAC	1 cut(s)	313
BslI	CCNNNNNNNGG	1 cut(s)	286
BsmAI	GTCTC	1 cut(s)	660
BsmBI	CGTCTC	1 cut(s)	660
BsmFI	GGGAC	1 cut(s)	313
BsnI	GGCC	3 cut(s)	102, 318, 361
BsoBI	CYCGRG	1 cut(s)	372
Bsp1286I	GDGCHC	1 cut(s)	307
Bsp143I	GATC	3 cut(s)	4, 223, 420
BspACI	CCGC	2 cut(s)	70, 377
BspANI	GGCC	3 cut(s)	102, 318, 361
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	1 cut(s)	12
BsrBI	CCGCTC	1 cut(s)	377
BsrDI	GCAATG	1 cut(s)	481
BssECI	CCNNGG	3 cut(s)	257, 387, 411
BssMI	GATC	3 cut(s)	4, 223, 420
BssT1I	CCWWGG	1 cut(s)	387
Bst2UI	CCWGG	3 cut(s)	399, 459, 538
Bst4CI	ACNGT	2 cut(s)	12, 214
Bst6I	CTCTTC	1 cut(s)	318
BstBAI	YACGTR	1 cut(s)	338
BstC8I	GCNNGC	2 cut(s)	100, 350
BstDEI	CTNAG	1 cut(s)	525
BstF5I	GGATG	3 cut(s)	139, 238, 253
BstKTI	GATC	3 cut(s)	7, 226, 423
BstMAI	GTCTC	1 cut(s)	660
BstMBI	GATC	3 cut(s)	4, 223, 420
BstMWI	GCNNNNNNNGC	5 cut(s)	30, 33, 42, 302, 358
BstNI	CCWGG	3 cut(s)	399, 459, 538
BstSCI	CCNGG	4 cut(s)	256, 397, 457, 536
BstV1I	GCAGC	2 cut(s)	11, 45
BstV2I	GAAGAC	1 cut(s)	502
BstX2I	RGATCY	1 cut(s)	4
BstXI	CCANNNNNNTGG	1 cut(s)	544
BstYI	RGATCY	1 cut(s)	4
Bsu36I	CCTNAGG	1 cut(s)	525
BsuRI	GGCC	3 cut(s)	102, 318, 361
BtsCI	GGATG	3 cut(s)	139, 238, 253
BtsIMutI	CAGTG	2 cut(s)	17, 219
Cac8I	GCNNGC	2 cut(s)	100, 350
Cfr13I	GGNCC	2 cut(s)	360, 395
Csp6I	GTAC	3 cut(s)	112, 618, 651
CspCI	CAANNNNNGTGG	2 cut(s)	72, 107
CviAII	CATG	1 cut(s)	246
CviQI	GTAC	3 cut(s)	112, 618, 651
DdeI	CTNAG	1 cut(s)	525
DpnI	GATC	3 cut(s)	6, 225, 422
DpnII	GATC	3 cut(s)	4, 223, 420
Eam1104I	CTCTTC	1 cut(s)	318
EarI	CTCTTC	1 cut(s)	318
Eco130I	CCWWGG	1 cut(s)	387
Eco24I	GRGCYC	1 cut(s)	307
Eco47I	GGWCC	1 cut(s)	395
Eco57I	CTGAAG	1 cut(s)	173
Eco81I	CCTNAGG	1 cut(s)	525
Eco88I	CYCGRG	1 cut(s)	372
EcoO109I	RGGNCCY	1 cut(s)	360
EcoRII	CCWGG	3 cut(s)	397, 457, 536
EcoT14I	CCWWGG	1 cut(s)	387
EcoT38I	GRGCYC	1 cut(s)	307
ErhI	CCWWGG	1 cut(s)	387
Esp3I	CGTCTC	1 cut(s)	660
FaeI	CATG	1 cut(s)	249
FaiI	YATR	7 cut(s)	43, 128, 156, 247, 484, 486, 641
FaqI	GGGAC	1 cut(s)	313
FatI	CATG	1 cut(s)	245
FauNDI	CATATG	1 cut(s)	484
FbaI	TGATCA	1 cut(s)	420
FblI	GTMKAC	1 cut(s)	492
Fnu4HI	GCNGC	2 cut(s)	25, 34
FokI	GGATG	3 cut(s)	126, 225, 240
FriOI	GRGCYC	1 cut(s)	307
Fsp4HI	GCNGC	2 cut(s)	25, 34
FspBI	CTAG	4 cut(s)	308, 516, 668, 672
GluI	GCNGC	2 cut(s)	25, 34
HaeIII	GGCC	3 cut(s)	102, 318, 361
HapII	CCGG	1 cut(s)	257
Hin1II	CATG	1 cut(s)	249
HinfI	GANTC	1 cut(s)	326
HpaII	CCGG	1 cut(s)	257
HphI	GGTGA	1 cut(s)	52
Hpy166II	GTNNAC	1 cut(s)	493
Hpy188I	TCNGA	3 cut(s)	192, 286, 425
Hpy188III	TCNNGA	1 cut(s)	372
Hpy8I	GTNNAC	1 cut(s)	493
HpyAV	CCTTC	1 cut(s)	73
HpyCH4III	ACNGT	2 cut(s)	12, 214
HpyCH4IV	ACGT	2 cut(s)	337, 653
HpyCH4V	TGCA	4 cut(s)	27, 33, 151, 633
HpyF10VI	GCNNNNNNNGC	5 cut(s)	30, 33, 42, 302, 358
HpyF3I	CTNAG	1 cut(s)	525
HpySE526I	ACGT	2 cut(s)	337, 653
Hsp92II	CATG	1 cut(s)	249
Ksp22I	TGATCA	1 cut(s)	420
Kzo9I	GATC	3 cut(s)	4, 223, 420
Lsp1109I	GCAGC	2 cut(s)	11, 45
LweI	GCATC	1 cut(s)	138
MaeI	CTAG	4 cut(s)	308, 516, 668, 672
MaeII	ACGT	2 cut(s)	337, 653
MaeIII	GTNAC	1 cut(s)	208
MalI	GATC	3 cut(s)	6, 225, 422
MbiI	CCGCTC	1 cut(s)	377
MboI	GATC	3 cut(s)	4, 223, 420
MboII	GAAGA	4 cut(s)	58, 205, 335, 502
MfeI	CAATTG	1 cut(s)	28
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	1 cut(s)	307
MluCI	AATT	3 cut(s)	28, 129, 583
MlyI	GAGTC	1 cut(s)	335
MnlI	CCTC	8 cut(s)	82, 88, 171, 280, 283, 373, 406, 419
MspI	CCGG	1 cut(s)	257
MspR9I	CCNGG	4 cut(s)	258, 399, 459, 538
MunI	CAATTG	1 cut(s)	28
MvaI	CCWGG	3 cut(s)	399, 459, 538
MwoI	GCNNNNNNNGC	5 cut(s)	30, 33, 42, 302, 358
NciI	CCSGG	1 cut(s)	258
NdeI	CATATG	1 cut(s)	484
NdeII	GATC	3 cut(s)	4, 223, 420
NlaIII	CATG	1 cut(s)	249
NlaIV	GGNNCC	1 cut(s)	6
NmeAIII	GCCGAG	1 cut(s)	436
NmuCI	GTSAC	1 cut(s)	208
PfoI	TCCNGGA	1 cut(s)	457
PkrI	GCNGC	2 cut(s)	26, 35
PleI	GAGTC	1 cut(s)	334
PpsI	GAGTC	1 cut(s)	334
Ppu21I	YACGTR	1 cut(s)	338
Psp6I	CCWGG	3 cut(s)	397, 457, 536
PspGI	CCWGG	3 cut(s)	397, 457, 536
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	2 cut(s)	360, 395
PsuI	RGATCY	1 cut(s)	4
RsaI	GTAC	3 cut(s)	113, 619, 652
RsaNI	GTAC	3 cut(s)	112, 618, 651
SatI	GCNGC	2 cut(s)	25, 34
Sau3AI	GATC	3 cut(s)	4, 223, 420
Sau96I	GGNCC	2 cut(s)	360, 395
SchI	GAGTC	1 cut(s)	335
ScrFI	CCNGG	4 cut(s)	258, 399, 459, 538
SduI	GDGCHC	1 cut(s)	307
SetI	ASST	8 cut(s)	65, 93, 272, 294, 298, 340, 656, 673
SfaNI	GCATC	1 cut(s)	138
SinI	GGWCC	1 cut(s)	395
Sse9I	AATT	3 cut(s)	28, 129, 583
SsiI	CCGC	2 cut(s)	70, 377
SspMI	CTAG	4 cut(s)	308, 516, 668, 672
StyD4I	CCNGG	4 cut(s)	256, 397, 457, 536
StyI	CCWWGG	1 cut(s)	387
TaaI	ACNGT	2 cut(s)	12, 214
TaiI	ACGT	2 cut(s)	340, 656
TasI	AATT	3 cut(s)	28, 129, 583
TatI	WGTACW	1 cut(s)	111
TscAI	CASTG	2 cut(s)	17, 219
TseFI	GTSAC	1 cut(s)	208
TseI	GCWGC	2 cut(s)	24, 33
Tsp45I	GTSAC	1 cut(s)	208
TspDTI	ATGAA	3 cut(s)	128, 242, 577
TspRI	CASTG	2 cut(s)	17, 219
VpaK11BI	GGWCC	1 cut(s)	395
XmiI	GTMKAC	1 cut(s)	492
XspI	CTAG	4 cut(s)	308, 516, 668, 672

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.