FvH4_1g02220

Monogalactosyldiacylglycerol synthase 2

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Forward (+)
1192465 .. 1195673
3209 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g02220.t2

Sequence Viewer

Length: 1407 bp
ATGATGTCGGTGGCGTCGCCGAGAAAGTCAATAACGGAGAAAGTGTTTGAGAGGGTCGGAGGGGTTTCTTACCTGAGCAGTTATCTCAAGAACAATAACGGTCGTAACCACCACCACCATTATCACAGAGAAGTTGAGAGCGATGATGATTACTATGACGATGAGGGGACTATGGAGCTTGTGCAAATTGGAGCTGAGAGGACCAAGAACGTTTTGATTCTGATGAGTGATACCGGCGGCGGACACAGAGCTTCGGCTGAGGCGATTAAGGATGCGTTTCGGTTGGAGTTTGGAGATGAATACAGGGTGTTTGTGAAGGATGTGTGGAAAGAGTACACAGGTTGGCCTCTAAATAATATGGAGAGGTCTTACAAGTTCATGGTGAAACATGTTCAGCTATGGAAGGTTGCATTTCACAGTACCTCTCCTAGATGGATTCACAGTGTCTATCTTGCTGCCATTGCAGCCTACTATGCCAAGGAGGTGGAGGCCGGTCTAATGGAGTACAAGCCAGACATCATTATTAGTGTTCATCCTTTGATGCAACATATTCCTCTATGGGTTCTCAAATGGCAAGGGCTTCAGAAGAAAGTGATATTTGTGACAGTGATTACTGATCTCAACACTTGCCATCCTACATGGTTTCATCCGGGGGTCAATAGGTGTTACTGTCCATCGCAGGAGGTAGCTAAAAGAGCTCTAGTTGATGGCCTTGAAGAGTCCCAAATACGTGTTTTTGGCTTGCCCATCAGGCCCTCTTTTGCCCGAGCAGTAATCTCCAAGGATCAACTTAGAGAAGAACTTGAAATGGACCCTGAGTTGCCTGCAGTATTGCTGATGGGAGGTGGTGAAGGAATGGGGCCTGTAAAGGAAACTGCAAGAGCTCTGGGAGAATCCCTCTTTGATAAAGAACTGGGAAAACCAATTGCACAGCTGATCGTTATATGCGGCCGCAATAAAAACCTTGTTGCCACGCTTGAATCTGATGAGTGGAACATCCCAGTCAAGATTAGAGGATTTGAGACACAGATGGAGAAATGGATGGGATCTTGTGACTGCATCATAACAAAGGCTGGTCCAGGCACAATCGCGGAGGCATTGATCAGAGGGCTTCCTATTATTCTCAATGACTACATTCCTGGACAAGAAAAGGGCAACGTGCCTTATGTGGTAGACAATGGTGCTGGTGTCTTCACCAGAAGTCCCAAGGAAACAGCCAGGATTGTGGCAGAATGGTTCAGCACTAAGCCGAATGAACTCAAAAGAATGTCCGAGAATGCACTTAAACTAGCACAACCGGAGGCTGTTTTCGACATTGTCAAAGACATTCACGACCTCGCCTGCCAACGTGGTCCTCTCGCAAACATCGCTTACATCCTGACATCCTCATTTACAAGTATAATCTAA

Protein Analysis

469

Amino Acids

52.77

Weight (kDa)

6.3

Isoelectric Point (pI)

36.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MGDG_synth PF06925 82 - 250 2.7e-64 Monogalactosyldiacylglycerol (MGDG) synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1173
AccII CGCG 1 cut(s) 1091
AciI CCGC 5 cut(s) 237, 240, 948, 952, 1091
AclI AACGTT 1 cut(s) 210
AclWI GGATC 2 cut(s) 792, 1054
AcoI YGGCCR 1 cut(s) 949
AcuI CTGAAG 1 cut(s) 566
AcyI GRCGYC 1 cut(s) 14
AfaI GTAC 3 cut(s) 335, 421, 506
AflIII ACRYGT 2 cut(s) 388, 730
AgsI TTSAA 3 cut(s) 716, 806, 980
AjnI CCWGG 3 cut(s) 1078, 1138, 1217
AluBI AGCT 8 cut(s) 178, 194, 251, 397, 689, 698, 884, 934
AluI AGCT 8 cut(s) 178, 194, 251, 397, 689, 698, 884, 934
Alw21I GWGCWC 2 cut(s) 700, 886
Alw26I GTCTC 1 cut(s) 1016
AlwI GGATC 2 cut(s) 792, 1054
Ama87I CYCGRG 1 cut(s) 765
AoxI GGCC 6 cut(s) 344, 489, 709, 752, 860, 949
ApeKI GCWGC 2 cut(s) 455, 464
AspS9I GGNCC 6 cut(s) 201, 753, 811, 860, 1076, 1352
AsuC2I CCSGG 1 cut(s) 651
AsuHPI GGTGA 3 cut(s) 394, 860, 1186
AvaI CYCGRG 1 cut(s) 765
AvaII GGWCC 4 cut(s) 201, 811, 1076, 1352
BanII GRGCYC 2 cut(s) 700, 886
BbsI GAAGAC 1 cut(s) 1183
Bbv12I GWGCWC 2 cut(s) 700, 886
BbvCI CCTCAGC 1 cut(s) 258
BbvI GCAGC 2 cut(s) 442, 476
BccI CCATC 8 cut(s) 426, 639, 682, 701, 755, 832, 1024, 1036
BciT130I CCWGG 3 cut(s) 1080, 1140, 1219
BclI TGATCA 1 cut(s) 1101
BcnI CCSGG 1 cut(s) 651
BcoDI GTCTC 1 cut(s) 1016
BfaI CTAG 3 cut(s) 429, 701, 1289
BfmI CTRYAG 1 cut(s) 825
BglI GCCNNNNNGGC 1 cut(s) 751
BisI GCNGC 5 cut(s) 238, 456, 465, 949, 952
BlsI GCNGC 5 cut(s) 239, 457, 466, 950, 953
Bme1390I CCNGG 4 cut(s) 651, 1080, 1140, 1219
Bme18I GGWCC 4 cut(s) 201, 811, 1076, 1352
BmeT110I CYCGRG 1 cut(s) 765
BmgT120I GGNCC 6 cut(s) 201, 753, 811, 860, 1076, 1352
BmiI GGNNCC 2 cut(s) 813, 861
BmrFI CCNGG 4 cut(s) 651, 1080, 1140, 1219
BmrI ACTGGG 2 cut(s) 923, 995
BmsI GCATC 3 cut(s) 262, 531, 1068
BmuI ACTGGG 2 cut(s) 923, 995
BpiI GAAGAC 1 cut(s) 1183
BplI GAGNNNNNCTC 2 cut(s) 882, 914
Bpu10I CCTNAGC 2 cut(s) 74, 258
BpuEI CTTGAG 1 cut(s) 71
BpuMI CCSGG 1 cut(s) 651
BsaAI YACGTR 1 cut(s) 731
BsaHI GRCGYC 1 cut(s) 14
BsaJI CCNNGG 4 cut(s) 477, 650, 780, 1206
BsaWI WCCGGW 1 cut(s) 1297
BsaXI ACNNNNNCTCC 2 cut(s) 29, 59
Bse118I RCCGGY 2 cut(s) 233, 491
Bse1I ACTGG 2 cut(s) 918, 1001
Bse3DI GCAATG 1 cut(s) 459
BseBI CCWGG 3 cut(s) 1080, 1140, 1219
BseDI CCNNGG 4 cut(s) 477, 650, 780, 1206
BseGI GGATG 9 cut(s) 277, 325, 532, 631, 646, 996, 1047, 1374, 1382
BseMI GCAATG 1 cut(s) 459
BseMII CTCAG 4 cut(s) 65, 186, 249, 807
BseNI ACTGG 2 cut(s) 918, 1001
BseX3I CGGCCG 1 cut(s) 949
BseXI GCAGC 2 cut(s) 442, 476
Bsh1236I CGCG 1 cut(s) 1091
Bsh1285I CGRYCG 2 cut(s) 103, 952
BshFI GGCC 6 cut(s) 346, 491, 711, 754, 862, 951
BsiEI CGRYCG 2 cut(s) 103, 952
BsiHKAI GWGCWC 2 cut(s) 700, 886
BsiHKCI CYCGRG 1 cut(s) 765
BsiSI CCGG 4 cut(s) 234, 492, 650, 1298
BslFI GGGAC 3 cut(s) 181, 706, 1188
BsmAI GTCTC 1 cut(s) 1016
BsmFI GGGAC 3 cut(s) 181, 706, 1188
BsmI GAATGC 1 cut(s) 1282
BsnI GGCC 6 cut(s) 346, 491, 711, 754, 862, 951
BsoBI CYCGRG 1 cut(s) 765
Bsp1286I GDGCHC 2 cut(s) 700, 886
Bsp143I GATC 5 cut(s) 616, 784, 936, 1046, 1101
BspACI CCGC 5 cut(s) 237, 240, 948, 952, 1091
BspANI GGCC 6 cut(s) 346, 491, 711, 754, 862, 951
BspCNI CTCAG 4 cut(s) 66, 187, 250, 808
BspFNI CGCG 1 cut(s) 1091
BspLI GGNNCC 2 cut(s) 813, 861
BspMAI CTGCAG 1 cut(s) 829
BspPI GGATC 2 cut(s) 792, 1054
BsrDI GCAATG 1 cut(s) 459
BsrFI RCCGGY 2 cut(s) 233, 491
BsrI ACTGG 2 cut(s) 918, 1001
BssAI RCCGGY 2 cut(s) 233, 491
BssECI CCNNGG 4 cut(s) 477, 650, 780, 1206
BssMI GATC 5 cut(s) 616, 784, 936, 1046, 1101
BssNI GRCGYC 1 cut(s) 14
BssT1I CCWWGG 3 cut(s) 477, 780, 1206
Bst2UI CCWGG 3 cut(s) 1080, 1140, 1219
Bst4CI ACNGT 5 cut(s) 101, 419, 443, 607, 671
Bst6I CTCTTC 1 cut(s) 711
BstACI GRCGYC 1 cut(s) 14
BstBAI YACGTR 1 cut(s) 731
BstC8I GCNNGC 3 cut(s) 743, 825, 1342
BstDEI CTNAG 6 cut(s) 74, 195, 258, 791, 816, 1245
BstF5I GGATG 9 cut(s) 277, 325, 532, 631, 646, 996, 1047, 1374, 1382
BstFNI CGCG 1 cut(s) 1091
BstKTI GATC 5 cut(s) 619, 787, 939, 1049, 1104
BstMAI GTCTC 1 cut(s) 1016
BstMBI GATC 5 cut(s) 616, 784, 936, 1046, 1101
BstMCI CGRYCG 2 cut(s) 103, 952
BstMWI GCNNNNNNNGC 6 cut(s) 461, 464, 473, 695, 751, 1367
BstNI CCWGG 3 cut(s) 1080, 1140, 1219
BstNSI RCATGY 1 cut(s) 392
BstSCI CCNGG 4 cut(s) 649, 1078, 1138, 1217
BstSFI CTRYAG 1 cut(s) 825
BstUI CGCG 1 cut(s) 1091
BstV1I GCAGC 2 cut(s) 442, 476
BstV2I GAAGAC 1 cut(s) 1183
BstX2I RGATCY 1 cut(s) 1046
BstXI CCANNNNNNTGG 2 cut(s) 484, 1225
BstYI RGATCY 1 cut(s) 1046
BstZI CGGCCG 1 cut(s) 949
BsuRI GGCC 6 cut(s) 346, 491, 711, 754, 862, 951
BtgZI GCGATG 3 cut(s) 156, 660, 1351
BtsCI GGATG 9 cut(s) 277, 325, 532, 631, 646, 996, 1047, 1374, 1382
BtsIMutI CAGTG 2 cut(s) 448, 612
Cac8I GCNNGC 3 cut(s) 743, 825, 1342
CciNI GCGGCCGC 1 cut(s) 949
Cfr10I RCCGGY 2 cut(s) 233, 491
Cfr13I GGNCC 6 cut(s) 201, 753, 811, 860, 1076, 1352
CseI GACGC 1 cut(s) 3
Csp6I GTAC 3 cut(s) 334, 420, 505
CviAII CATG 3 cut(s) 379, 389, 639
CviQI GTAC 3 cut(s) 334, 420, 505
DdeI CTNAG 6 cut(s) 74, 195, 258, 791, 816, 1245
DpnI GATC 5 cut(s) 618, 786, 938, 1048, 1103
DpnII GATC 5 cut(s) 616, 784, 936, 1046, 1101
EaeI YGGCCR 1 cut(s) 949
EagI CGGCCG 1 cut(s) 949
Eam1104I CTCTTC 1 cut(s) 711
EarI CTCTTC 1 cut(s) 711
EciI GGCGGA 1 cut(s) 255
Ecl136II GAGCTC 2 cut(s) 698, 884
EclXI CGGCCG 1 cut(s) 949
Eco130I CCWWGG 3 cut(s) 477, 780, 1206
Eco24I GRGCYC 2 cut(s) 700, 886
Eco47I GGWCC 4 cut(s) 201, 811, 1076, 1352
Eco52I CGGCCG 1 cut(s) 949
Eco53kI GAGCTC 2 cut(s) 698, 884
Eco57I CTGAAG 1 cut(s) 566
Eco88I CYCGRG 1 cut(s) 765
EcoICRI GAGCTC 2 cut(s) 698, 884
EcoO109I RGGNCCY 2 cut(s) 753, 860
EcoRII CCWGG 3 cut(s) 1078, 1138, 1217
EcoT14I CCWWGG 3 cut(s) 477, 780, 1206
EcoT38I GRGCYC 2 cut(s) 700, 886
ErhI CCWWGG 3 cut(s) 477, 780, 1206
FaeI CATG 3 cut(s) 382, 392, 642
FaqI GGGAC 3 cut(s) 181, 706, 1188
FatI CATG 3 cut(s) 378, 388, 638
FbaI TGATCA 1 cut(s) 1101
FblI GTMKAC 1 cut(s) 1173
Fnu4HI GCNGC 5 cut(s) 238, 456, 465, 949, 952
FokI GGATG 9 cut(s) 284, 332, 519, 618, 633, 983, 1054, 1361, 1369
FriOI GRGCYC 2 cut(s) 700, 886
Fsp4HI GCNGC 5 cut(s) 238, 456, 465, 949, 952
FspBI CTAG 3 cut(s) 429, 701, 1289
GluI GCNGC 5 cut(s) 238, 456, 465, 949, 952
HaeIII GGCC 6 cut(s) 346, 491, 711, 754, 862, 951
HapII CCGG 4 cut(s) 234, 492, 650, 1298
HgaI GACGC 1 cut(s) 3
Hin1I GRCGYC 1 cut(s) 14
Hin1II CATG 3 cut(s) 382, 392, 642
HinfI GANTC 5 cut(s) 217, 436, 719, 893, 980
HpaII CCGG 4 cut(s) 234, 492, 650, 1298
HphI GGTGA 3 cut(s) 394, 860, 1186
Hpy166II GTNNAC 2 cut(s) 336, 1174
Hpy188I TCNGA 6 cut(s) 59, 222, 585, 985, 1106, 1273
Hpy188III TCNNGA 4 cut(s) 88, 1006, 1331, 1378
Hpy8I GTNNAC 2 cut(s) 336, 1174
Hpy99I CGWCG 1 cut(s) 19
HpyAV CCTTC 3 cut(s) 310, 397, 845
HpyCH4III ACNGT 5 cut(s) 101, 419, 443, 607, 671
HpyCH4IV ACGT 4 cut(s) 210, 730, 1158, 1348
HpyCH4V TGCA 9 cut(s) 184, 410, 464, 544, 827, 878, 929, 1059, 1280
HpyF10VI GCNNNNNNNGC 6 cut(s) 461, 464, 473, 695, 751, 1367
HpyF3I CTNAG 6 cut(s) 74, 195, 258, 791, 816, 1245
HpySE526I ACGT 4 cut(s) 210, 730, 1158, 1348
Hsp92I GRCGYC 1 cut(s) 14
Hsp92II CATG 3 cut(s) 382, 392, 642
Ksp22I TGATCA 1 cut(s) 1101
Kzo9I GATC 5 cut(s) 616, 784, 936, 1046, 1101
LmnI GCTCC 2 cut(s) 175, 191
Lsp1109I GCAGC 2 cut(s) 442, 476
LweI GCATC 3 cut(s) 262, 531, 1068
MaeI CTAG 3 cut(s) 429, 701, 1289
MaeII ACGT 4 cut(s) 210, 730, 1158, 1348
MaeIII GTNAC 4 cut(s) 104, 601, 665, 1052
MalI GATC 5 cut(s) 618, 786, 938, 1048, 1103
MboI GATC 5 cut(s) 616, 784, 936, 1046, 1101
MboII GAAGA 4 cut(s) 598, 728, 809, 1183
MfeI CAATTG 1 cut(s) 924
MflI RGATCY 1 cut(s) 1046
MhlI GDGCHC 2 cut(s) 700, 886
MluCI AATT 2 cut(s) 186, 924
MlyI GAGTC 1 cut(s) 728
MmeI TCCRAC 2 cut(s) 37, 264
MseI TTAA 2 cut(s) 267, 1284
MspA1I CMGCKG 1 cut(s) 934
MspI CCGG 4 cut(s) 234, 492, 650, 1298
MspR9I CCNGG 4 cut(s) 651, 1080, 1140, 1219
MunI CAATTG 1 cut(s) 924
Mva1269I GAATGC 1 cut(s) 1282
MvaI CCWGG 3 cut(s) 1080, 1140, 1219
MvnI CGCG 1 cut(s) 1091
MwoI GCNNNNNNNGC 6 cut(s) 461, 464, 473, 695, 751, 1367
NciI CCSGG 1 cut(s) 651
NdeII GATC 5 cut(s) 616, 784, 936, 1046, 1101
NlaIII CATG 3 cut(s) 382, 392, 642
NlaIV GGNNCC 2 cut(s) 813, 861
NmeAIII GCCGAG 1 cut(s) 45
NmuCI GTSAC 2 cut(s) 601, 1052
NotI GCGGCCGC 1 cut(s) 949
NspI RCATGY 1 cut(s) 392
PciI ACATGT 1 cut(s) 388
PcsI WCGNNNNNNNCGW 1 cut(s) 260
PctI GAATGC 1 cut(s) 1282
PfeI GAWTC 4 cut(s) 217, 436, 893, 980
PflFI GACNNNGTC 1 cut(s) 1316
PfoI TCCNGGA 1 cut(s) 1138
PkrI GCNGC 5 cut(s) 239, 457, 466, 950, 953
PleI GAGTC 1 cut(s) 727
PpsI GAGTC 1 cut(s) 727
Ppu21I YACGTR 1 cut(s) 731
PscI ACATGT 1 cut(s) 388
Psp124BI GAGCTC 2 cut(s) 700, 886
Psp1406I AACGTT 1 cut(s) 210
Psp6I CCWGG 3 cut(s) 1078, 1138, 1217
PspGI CCWGG 3 cut(s) 1078, 1138, 1217
PspN4I GGNNCC 2 cut(s) 813, 861
PspPI GGNCC 6 cut(s) 201, 753, 811, 860, 1076, 1352
PstI CTGCAG 1 cut(s) 829
PsuI RGATCY 1 cut(s) 1046
PsyI GACNNNGTC 1 cut(s) 1316
PvuII CAGCTG 1 cut(s) 934
RsaI GTAC 3 cut(s) 335, 421, 506
RsaNI GTAC 3 cut(s) 334, 420, 505
SacI GAGCTC 2 cut(s) 700, 886
SaqAI TTAA 2 cut(s) 267, 1284
SatI GCNGC 5 cut(s) 238, 456, 465, 949, 952
Sau3AI GATC 5 cut(s) 616, 784, 936, 1046, 1101
Sau96I GGNCC 6 cut(s) 201, 753, 811, 860, 1076, 1352
SchI GAGTC 1 cut(s) 728
ScrFI CCNGG 4 cut(s) 651, 1080, 1140, 1219
SduI GDGCHC 2 cut(s) 700, 886
SfaNI GCATC 3 cut(s) 262, 531, 1068
SfcI CTRYAG 1 cut(s) 825
SinI GGWCC 4 cut(s) 201, 811, 1076, 1352
SmlI CTYRAG 1 cut(s) 86
SmoI CTYRAG 1 cut(s) 86
Sse9I AATT 2 cut(s) 186, 924
SsiI CCGC 5 cut(s) 237, 240, 948, 952, 1091
SspMI CTAG 3 cut(s) 429, 701, 1289
SstI GAGCTC 2 cut(s) 700, 886
StyD4I CCNGG 4 cut(s) 649, 1078, 1138, 1217
StyI CCWWGG 3 cut(s) 477, 780, 1206
TaaI ACNGT 5 cut(s) 101, 419, 443, 607, 671
TaiI ACGT 4 cut(s) 213, 733, 1161, 1351
TaqI TCGA 1 cut(s) 1311
TasI AATT 2 cut(s) 186, 924
TatI WGTACW 2 cut(s) 333, 504
TauI GCSGC 3 cut(s) 240, 951, 954
TfiI GAWTC 4 cut(s) 217, 436, 893, 980
Tru1I TTAA 2 cut(s) 267, 1284
Tru9I TTAA 2 cut(s) 267, 1284
TscAI CASTG 2 cut(s) 448, 612
TseFI GTSAC 2 cut(s) 601, 1052
TseI GCWGC 2 cut(s) 455, 464
Tsp45I GTSAC 2 cut(s) 601, 1052
TspDTI ATGAA 5 cut(s) 312, 367, 521, 635, 1269
TspGWI ACGGA 1 cut(s) 50
TspRI CASTG 2 cut(s) 448, 612
Tth111I GACNNNGTC 1 cut(s) 1316
VpaK11BI GGWCC 4 cut(s) 201, 811, 1076, 1352
XceI RCATGY 1 cut(s) 392
XmiI GTMKAC 1 cut(s) 1173
XspI CTAG 3 cut(s) 429, 701, 1289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.