Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0001366

Physical Location & Seq

Genomic Coordinates Reverse (-)

26776166 .. 26788174

Gene Structure 12009 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG122800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGGTTATCATGCCTAACGGCTCAGAGAGGCAAGTCTGCTGGATCCTGGCTGCTGACAGTTCTTTTGCCACAAACTGCATAGTGGGTCGTCAACCTGGATCAGTGCTCATGCATGCCAAGGCCATTGTTACGACGTTTCATCCGGGGGTCAATAGGTGTTACTGCCCATCGGAGGAGGTAGCTAAAAGAGCTCTAGTATATGGCCTTGAAGAGTCCCAAAAACGTGTTTTTGGCTTGCCCATCAGGCCCTCTTTTGCCCGAGCGGTTATCTCCAAGGATCAACTCAGAGGAGAACTCAAAATGGACCCTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006643 GO:0006664 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008194 GO:0008378 GO:0009267 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009605 GO:0009707 GO:0009941 GO:0009987 GO:0009991 GO:0016020 GO:0016036 GO:0016740 GO:0016757 GO:0016758 GO:0019374 GO:0019752 GO:0019867 GO:0031090 GO:0031667 GO:0031668 GO:0031669 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032787 GO:0033554 GO:0035250 GO:0042170 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0071496 GO:0071704 GO:0098588 GO:0098805 GO:1901135 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00561 ko01100 map00561 map01100

Pfam Domains

Protein Families

Glyco_tran_28_C MGDG_synth

Protein Analysis

104

Amino Acids

11.51

Weight (kDa)

8.82

Isoelectric Point (pI)

57.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MGDG_synth	PF06925	46 - 81	8.3e-07	Monogalactosyldiacylglycerol (MGDG) synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001366)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G11810 AT2G11810 AT2G11810 AT2G11810 AT5G20410
fragaria_vesca	FvH4_1g02220 FvH4_1g02220 FvH4_1g02220 FvH4_1g21680
malus_domestica	MD02G1020400.v1.1 MD15G1163200.v1.1
prunus_persica	Prupe.7G251400_v2.0.a1
pyrus_communis	pycom02g01790 pycom15g14680
rosa_chinensis	RchiOBHm_Chr2g0087331 RchiOBHm_Chr3g0481741 RchiOBHm_Chr4g0421821 RchiOBHm_Chr6g0246901
rosa_laevigata	RLG00000003836 RLG00000015857
rosa_multiflora	Rmu_co8187728.1_g000001 Rmu_co8222200.1_g000001 Rmu_sc0000540.1_g000032 Rmu_sc0003367.1_g000024 Rmu_sc0006064.1_g000001 Rmu_sc0007105.1_g000003 Rmu_sc0016592.1_g000001 Rmu_sc0037595.1_g000001
rosa_roxburghii	Rroxscaffold_1G00028410 Rroxscaffold_2G00111080 Rroxscaffold_2G00153680 Rroxscaffold_3G00242830 Rroxscaffold_4G00276430 Rroxscaffold_4G00300210 Rroxscaffold_7G00214190
rosa_rugosa	Rorug01G0474200
rosa_samantha	Rh1CG122800 Rh2AG027800 Rh2AG631400 Rh2BG027300 Rh2BG300600 Rh2CG028100 Rh2DG027900 Rh4BG234200 Rh5CG220000 Rh6BG190700 Rh6CG106700 Rh6CG108200 Rh6DG097200 Rh6DG098600 Rh7CG224800
rosa_wichuraiana	Rw1G013320 Rw2G002200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	263
AciI	CCGC	1 cut(s)	263
AclWI	GGATC	4 cut(s)	37, 50, 106, 285
AfiI	CCNNNNNNNGG	1 cut(s)	172
AflIII	ACRYGT	1 cut(s)	223
AgsI	TTSAA	1 cut(s)	209
AjnI	CCWGG	2 cut(s)	45, 94
AluBI	AGCT	2 cut(s)	182, 191
AluI	AGCT	2 cut(s)	182, 191
Alw21I	GWGCWC	2 cut(s)	108, 193
AlwI	GGATC	4 cut(s)	37, 50, 106, 285
Ama87I	CYCGRG	1 cut(s)	258
AoxI	GGCC	3 cut(s)	120, 202, 245
ApeKI	GCWGC	1 cut(s)	50
ArsI	GACNNNNNNTTYG	2 cut(s)	47, 79
AspS9I	GGNCC	2 cut(s)	246, 304
AsuC2I	CCSGG	1 cut(s)	144
AvaI	CYCGRG	1 cut(s)	258
AvaII	GGWCC	1 cut(s)	304
BamHI	GGATCC	1 cut(s)	42
BanII	GRGCYC	1 cut(s)	193
Bbv12I	GWGCWC	2 cut(s)	108, 193
BbvI	GCAGC	1 cut(s)	37
BccI	CCATC	2 cut(s)	175, 248
BceAI	ACGGC	1 cut(s)	34
BciT130I	CCWGG	2 cut(s)	47, 96
BcnI	CCSGG	1 cut(s)	144
BfaI	CTAG	1 cut(s)	194
BglI	GCCNNNNNGGC	1 cut(s)	244
BisI	GCNGC	1 cut(s)	51
BlsI	GCNGC	1 cut(s)	52
Bme1390I	CCNGG	3 cut(s)	47, 96, 144
Bme18I	GGWCC	1 cut(s)	304
BmeT110I	CYCGRG	1 cut(s)	258
BmgT120I	GGNCC	2 cut(s)	246, 304
BmiI	GGNNCC	2 cut(s)	44, 306
BmrFI	CCNGG	3 cut(s)	47, 96, 144
BplI	GAGNNNNNCTC	2 cut(s)	279, 311
BpuMI	CCSGG	1 cut(s)	144
BsaJI	CCNNGG	3 cut(s)	117, 143, 273
Bsc4I	CCNNNNNNNGG	1 cut(s)	172
BseBI	CCWGG	2 cut(s)	47, 96
BseDI	CCNNGG	3 cut(s)	117, 143, 273
BseGI	GGATG	1 cut(s)	139
BseLI	CCNNNNNNNGG	1 cut(s)	172
BseMII	CTCAG	2 cut(s)	36, 298
BseRI	GAGGAG	2 cut(s)	188, 303
BseXI	GCAGC	1 cut(s)	37
BshFI	GGCC	3 cut(s)	122, 204, 247
BsiHKAI	GWGCWC	2 cut(s)	108, 193
BsiHKCI	CYCGRG	1 cut(s)	258
BsiSI	CCGG	1 cut(s)	143
BslFI	GGGAC	1 cut(s)	199
BslI	CCNNNNNNNGG	1 cut(s)	172
BsmFI	GGGAC	1 cut(s)	199
BsnI	GGCC	3 cut(s)	122, 204, 247
BsoBI	CYCGRG	1 cut(s)	258
Bsp1286I	GDGCHC	2 cut(s)	108, 193
Bsp143I	GATC	3 cut(s)	42, 98, 277
BspACI	CCGC	1 cut(s)	263
BspANI	GGCC	3 cut(s)	122, 204, 247
BspCNI	CTCAG	2 cut(s)	35, 297
BspLI	GGNNCC	2 cut(s)	44, 306
BspPI	GGATC	4 cut(s)	37, 50, 106, 285
BsrBI	CCGCTC	1 cut(s)	263
BssECI	CCNNGG	3 cut(s)	117, 143, 273
BssMI	GATC	3 cut(s)	42, 98, 277
BssT1I	CCWWGG	2 cut(s)	117, 273
Bst2UI	CCWGG	2 cut(s)	47, 96
Bst4CI	ACNGT	1 cut(s)	59
Bst6I	CTCTTC	1 cut(s)	204
BstC8I	GCNNGC	2 cut(s)	114, 236
BstDEI	CTNAG	2 cut(s)	22, 284
BstF5I	GGATG	1 cut(s)	139
BstKTI	GATC	3 cut(s)	45, 101, 280
BstMBI	GATC	3 cut(s)	42, 98, 277
BstMWI	GCNNNNNNNGC	2 cut(s)	188, 244
BstNI	CCWGG	2 cut(s)	47, 96
BstNSI	RCATGY	1 cut(s)	116
BstSCI	CCNGG	3 cut(s)	45, 94, 142
BstV1I	GCAGC	1 cut(s)	37
BstX2I	RGATCY	1 cut(s)	42
BstYI	RGATCY	1 cut(s)	42
BsuRI	GGCC	3 cut(s)	122, 204, 247
BtsCI	GGATG	1 cut(s)	139
BtsIMutI	CAGTG	1 cut(s)	108
Cac8I	GCNNGC	2 cut(s)	114, 236
Cfr13I	GGNCC	2 cut(s)	246, 304
CviAII	CATG	3 cut(s)	10, 109, 113
CviJI	RGCY	8 cut(s)	21, 50, 122, 182, 191, 204, 234, 247
CviKI_1	RGCY	8 cut(s)	21, 50, 122, 182, 191, 204, 234, 247
DdeI	CTNAG	2 cut(s)	22, 284
DpnI	GATC	3 cut(s)	44, 100, 279
DpnII	GATC	3 cut(s)	42, 98, 277
Eam1104I	CTCTTC	1 cut(s)	204
EarI	CTCTTC	1 cut(s)	204
Ecl136II	GAGCTC	1 cut(s)	191
Eco130I	CCWWGG	2 cut(s)	117, 273
Eco24I	GRGCYC	1 cut(s)	193
Eco47I	GGWCC	1 cut(s)	304
Eco53kI	GAGCTC	1 cut(s)	191
Eco88I	CYCGRG	1 cut(s)	258
EcoICRI	GAGCTC	1 cut(s)	191
EcoO109I	RGGNCCY	1 cut(s)	246
EcoRII	CCWGG	2 cut(s)	45, 94
EcoT14I	CCWWGG	2 cut(s)	117, 273
EcoT22I	ATGCAT	1 cut(s)	114
EcoT38I	GRGCYC	1 cut(s)	193
ErhI	CCWWGG	2 cut(s)	117, 273
FaeI	CATG	3 cut(s)	13, 112, 116
FaiI	YATR	6 cut(s)	11, 80, 110, 114, 199, 201
FaqI	GGGAC	1 cut(s)	199
FatI	CATG	3 cut(s)	9, 108, 112
Fnu4HI	GCNGC	1 cut(s)	51
FokI	GGATG	1 cut(s)	126
FriOI	GRGCYC	1 cut(s)	193
Fsp4HI	GCNGC	1 cut(s)	51
FspBI	CTAG	1 cut(s)	194
GluI	GCNGC	1 cut(s)	51
HaeIII	GGCC	3 cut(s)	122, 204, 247
HapII	CCGG	1 cut(s)	143
Hin1II	CATG	3 cut(s)	13, 112, 116
HincII	GTYRAC	1 cut(s)	92
HindII	GTYRAC	1 cut(s)	92
HinfI	GANTC	1 cut(s)	212
HpaII	CCGG	1 cut(s)	143
Hpy166II	GTNNAC	1 cut(s)	92
Hpy188I	TCNGA	3 cut(s)	25, 172, 287
Hpy8I	GTNNAC	1 cut(s)	92
Hpy99I	CGWCG	1 cut(s)	136
HpyCH4III	ACNGT	1 cut(s)	59
HpyCH4IV	ACGT	2 cut(s)	134, 223
HpyCH4V	TGCA	2 cut(s)	78, 112
HpyF10VI	GCNNNNNNNGC	2 cut(s)	188, 244
HpyF3I	CTNAG	2 cut(s)	22, 284
HpySE526I	ACGT	2 cut(s)	134, 223
Hsp92II	CATG	3 cut(s)	13, 112, 116
Kzo9I	GATC	3 cut(s)	42, 98, 277
LpnPI	CCDG	7 cut(s)	25, 32, 59, 81, 108, 156, 229
Lsp1109I	GCAGC	1 cut(s)	37
MaeI	CTAG	1 cut(s)	194
MaeII	ACGT	2 cut(s)	134, 223
MaeIII	GTNAC	2 cut(s)	127, 158
MalI	GATC	3 cut(s)	44, 100, 279
MbiI	CCGCTC	1 cut(s)	263
MboI	GATC	3 cut(s)	42, 98, 277
MboII	GAAGA	1 cut(s)	221
MflI	RGATCY	1 cut(s)	42
MhlI	GDGCHC	2 cut(s)	108, 193
MlyI	GAGTC	1 cut(s)	221
MnlI	CCTC	5 cut(s)	21, 166, 169, 259, 281
Mph1103I	ATGCAT	1 cut(s)	114
MspI	CCGG	1 cut(s)	143
MspR9I	CCNGG	3 cut(s)	47, 96, 144
MvaI	CCWGG	2 cut(s)	47, 96
MwoI	GCNNNNNNNGC	2 cut(s)	188, 244
NciI	CCSGG	1 cut(s)	144
NdeII	GATC	3 cut(s)	42, 98, 277
NlaIII	CATG	3 cut(s)	13, 112, 116
NlaIV	GGNNCC	2 cut(s)	44, 306
NsiI	ATGCAT	1 cut(s)	114
NspI	RCATGY	1 cut(s)	116
PaeI	GCATGC	1 cut(s)	116
PkrI	GCNGC	1 cut(s)	52
PleI	GAGTC	1 cut(s)	220
PpsI	GAGTC	1 cut(s)	220
Psp124BI	GAGCTC	1 cut(s)	193
Psp6I	CCWGG	2 cut(s)	45, 94
PspGI	CCWGG	2 cut(s)	45, 94
PspN4I	GGNNCC	2 cut(s)	44, 306
PspPI	GGNCC	2 cut(s)	246, 304
PsuI	RGATCY	1 cut(s)	42
SacI	GAGCTC	1 cut(s)	193
SatI	GCNGC	1 cut(s)	51
Sau3AI	GATC	3 cut(s)	42, 98, 277
Sau96I	GGNCC	2 cut(s)	246, 304
SchI	GAGTC	1 cut(s)	221
ScrFI	CCNGG	3 cut(s)	47, 96, 144
SduI	GDGCHC	2 cut(s)	108, 193
SetI	ASST	7 cut(s)	97, 137, 158, 180, 184, 193, 226
SinI	GGWCC	1 cut(s)	304
SphI	GCATGC	1 cut(s)	116
SsiI	CCGC	1 cut(s)	263
SspMI	CTAG	1 cut(s)	194
SstI	GAGCTC	1 cut(s)	193
StyD4I	CCNGG	3 cut(s)	45, 94, 142
StyI	CCWWGG	2 cut(s)	117, 273
TaaI	ACNGT	1 cut(s)	59
TaiI	ACGT	2 cut(s)	137, 226
TscAI	CASTG	1 cut(s)	108
TseI	GCWGC	1 cut(s)	50
TspDTI	ATGAA	1 cut(s)	128
TspRI	CASTG	1 cut(s)	108
VpaK11BI	GGWCC	1 cut(s)	304
XceI	RCATGY	1 cut(s)	116
XspI	CTAG	1 cut(s)	194
Zsp2I	ATGCAT	1 cut(s)	114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.