Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0001366

Physical Location & Seq

Genomic Coordinates Forward (+)

12197305 .. 12199972

Gene Structure 2668 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG097200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGACAACGATTTTTGGAATTAAGTTTCAGCTGCTTAGAGAAGCTACCACTTCCGTTTTGGAGATACTGAAACTTGATGTTATCTCATTTTTGTACATTCCAATACAGGTATTTGTGAAGGATGTGTGGAAAGAATACACAGGTTGGCCTTTAAATAATATGGACAGGCCTTACAAGTTCATGGTGAAACATGTTCAGCTATGGAAGGTTGCATTTCACAGTACTTCTCCTAGATGGATCCACAGTGTCTATCTTGCTGCCATTGCAGCCTACTATGCCAAGGAGGTGGAGGCTGGTCTAATGGAGTACAAGCCAGACATCATAATTAGTGTTCATCCTTTGATGCAACATATTCCTCTTTTCTCAAATGGCAAGGACTTCAGAAGAAAGTTTCATCTGGGGGTCAATAGGTGTTACTGCCCATCGGAGGAGGTAGCTAAAAGAGCTCTAGTATATGGCCTTGAAGAGTCTCAAAAACGTGTTTTTGGCTTGCCCATCAGGCCCTCTTTTGCCCGAGCGGTTATCTCCAAGGATCAACTCATTATTTGTGGCCGCAATAAAAACCTTGTCTCCACGCTTGAATCTGATGAGTGGAACATCCCAGTCAAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006643 GO:0006664 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008194 GO:0008378 GO:0009267 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009605 GO:0009707 GO:0009941 GO:0009987 GO:0009991 GO:0016020 GO:0016036 GO:0016740 GO:0016757 GO:0016758 GO:0019374 GO:0019752 GO:0019867 GO:0031090 GO:0031667 GO:0031668 GO:0031669 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032787 GO:0033554 GO:0035250 GO:0042170 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0071496 GO:0071704 GO:0098588 GO:0098805 GO:1901135 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00561 ko01100 map00561 map01100

Pfam Domains

Protein Families

Glyco_tran_28_C MGDG_synth

Protein Analysis

203

Amino Acids

23.59

Weight (kDa)

9.38

Isoelectric Point (pI)

38.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MGDG_synth	PF06925	35 - 120	1e-24	Monogalactosyldiacylglycerol (MGDG) synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001366)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G11810 AT2G11810 AT2G11810 AT2G11810 AT5G20410
fragaria_vesca	FvH4_1g02220 FvH4_1g02220 FvH4_1g02220 FvH4_1g21680
malus_domestica	MD02G1020400.v1.1 MD15G1163200.v1.1
prunus_persica	Prupe.7G251400_v2.0.a1
pyrus_communis	pycom02g01790 pycom15g14680
rosa_chinensis	RchiOBHm_Chr2g0087331 RchiOBHm_Chr3g0481741 RchiOBHm_Chr4g0421821 RchiOBHm_Chr6g0246901
rosa_laevigata	RLG00000003836 RLG00000015857
rosa_multiflora	Rmu_co8187728.1_g000001 Rmu_co8222200.1_g000001 Rmu_sc0000540.1_g000032 Rmu_sc0003367.1_g000024 Rmu_sc0006064.1_g000001 Rmu_sc0007105.1_g000003 Rmu_sc0016592.1_g000001 Rmu_sc0037595.1_g000001
rosa_roxburghii	Rroxscaffold_1G00028410 Rroxscaffold_2G00111080 Rroxscaffold_2G00153680 Rroxscaffold_3G00242830 Rroxscaffold_4G00276430 Rroxscaffold_4G00300210 Rroxscaffold_7G00214190
rosa_rugosa	Rorug01G0474200
rosa_samantha	Rh1CG122800 Rh2AG027800 Rh2AG631400 Rh2BG027300 Rh2BG300600 Rh2CG028100 Rh2DG027900 Rh4BG234200 Rh5CG220000 Rh6BG190700 Rh6CG106700 Rh6CG108200 Rh6DG097200 Rh6DG098600 Rh7CG224800
rosa_wichuraiana	Rw1G013320 Rw2G002200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	518
AciI	CCGC	2 cut(s)	518, 553
AclWI	GGATC	3 cut(s)	232, 245, 540
AcoI	YGGCCR	1 cut(s)	550
AcuI	CTGAAG	1 cut(s)	364
AfaI	GTAC	3 cut(s)	95, 223, 308
AfiI	CCNNNNNNNGG	1 cut(s)	427
AflIII	ACRYGT	2 cut(s)	190, 478
AgsI	TTSAA	2 cut(s)	464, 581
AluBI	AGCT	5 cut(s)	31, 44, 199, 437, 446
AluI	AGCT	5 cut(s)	31, 44, 199, 437, 446
Alw21I	GWGCWC	1 cut(s)	448
Alw26I	GTCTC	2 cut(s)	474, 574
AlwI	GGATC	3 cut(s)	232, 245, 540
Ama87I	CYCGRG	1 cut(s)	513
AoxI	GGCC	5 cut(s)	146, 167, 457, 500, 550
ApeKI	GCWGC	3 cut(s)	31, 257, 266
AspS9I	GGNCC	1 cut(s)	501
AsuHPI	GGTGA	1 cut(s)	196
AvaI	CYCGRG	1 cut(s)	513
BamHI	GGATCC	1 cut(s)	237
BanII	GRGCYC	1 cut(s)	448
Bbv12I	GWGCWC	1 cut(s)	448
BbvI	GCAGC	3 cut(s)	18, 244, 278
BccI	CCATC	3 cut(s)	228, 430, 503
BcoDI	GTCTC	2 cut(s)	474, 574
BfaI	CTAG	2 cut(s)	231, 449
BglI	GCCNNNNNGGC	1 cut(s)	499
BisI	GCNGC	4 cut(s)	32, 258, 267, 553
BlsI	GCNGC	4 cut(s)	33, 259, 268, 554
BmcAI	AGTACT	1 cut(s)	223
BmeT110I	CYCGRG	1 cut(s)	513
BmgT120I	GGNCC	1 cut(s)	501
BmiI	GGNNCC	1 cut(s)	239
BmrI	ACTGGG	1 cut(s)	596
BmsI	GCATC	1 cut(s)	333
BmuI	ACTGGG	1 cut(s)	596
BsaJI	CCNNGG	2 cut(s)	279, 528
BsaXI	ACNNNNNCTCC	2 cut(s)	554, 584
Bsc4I	CCNNNNNNNGG	1 cut(s)	427
Bse1I	ACTGG	1 cut(s)	602
Bse3DI	GCAATG	1 cut(s)	261
BseDI	CCNNGG	2 cut(s)	279, 528
BseGI	GGATG	3 cut(s)	127, 334, 597
BseLI	CCNNNNNNNGG	1 cut(s)	427
BseMI	GCAATG	1 cut(s)	261
BseNI	ACTGG	1 cut(s)	602
BseRI	GAGGAG	1 cut(s)	443
BseXI	GCAGC	3 cut(s)	18, 244, 278
BshFI	GGCC	5 cut(s)	148, 169, 459, 502, 552
BsiHKAI	GWGCWC	1 cut(s)	448
BsiHKCI	CYCGRG	1 cut(s)	513
BslI	CCNNNNNNNGG	1 cut(s)	427
BsmAI	GTCTC	2 cut(s)	474, 574
BsnI	GGCC	5 cut(s)	148, 169, 459, 502, 552
BsoBI	CYCGRG	1 cut(s)	513
Bsp1286I	GDGCHC	1 cut(s)	448
Bsp1407I	TGTACA	1 cut(s)	93
Bsp143I	GATC	2 cut(s)	237, 532
BspACI	CCGC	2 cut(s)	518, 553
BspANI	GGCC	5 cut(s)	148, 169, 459, 502, 552
BspLI	GGNNCC	1 cut(s)	239
BspPI	GGATC	3 cut(s)	232, 245, 540
BsrBI	CCGCTC	1 cut(s)	518
BsrDI	GCAATG	1 cut(s)	261
BsrGI	TGTACA	1 cut(s)	93
BsrI	ACTGG	1 cut(s)	602
BssECI	CCNNGG	2 cut(s)	279, 528
BssMI	GATC	2 cut(s)	237, 532
BssT1I	CCWWGG	2 cut(s)	279, 528
Bst4CI	ACNGT	2 cut(s)	221, 245
Bst6I	CTCTTC	1 cut(s)	459
BstAUI	TGTACA	1 cut(s)	93
BstC8I	GCNNGC	1 cut(s)	491
BstDEI	CTNAG	1 cut(s)	35
BstF5I	GGATG	3 cut(s)	127, 334, 597
BstKTI	GATC	2 cut(s)	240, 535
BstMAI	GTCTC	2 cut(s)	474, 574
BstMBI	GATC	2 cut(s)	237, 532
BstMWI	GCNNNNNNNGC	5 cut(s)	263, 266, 275, 443, 499
BstNSI	RCATGY	1 cut(s)	194
BstV1I	GCAGC	3 cut(s)	18, 244, 278
BstX2I	RGATCY	1 cut(s)	237
BstXI	CCANNNNNNTGG	1 cut(s)	286
BstYI	RGATCY	1 cut(s)	237
BsuRI	GGCC	5 cut(s)	148, 169, 459, 502, 552
BtsCI	GGATG	3 cut(s)	127, 334, 597
BtsIMutI	CAGTG	1 cut(s)	250
Cac8I	GCNNGC	1 cut(s)	491
Cfr13I	GGNCC	1 cut(s)	501
Csp6I	GTAC	3 cut(s)	94, 222, 307
CviAII	CATG	2 cut(s)	181, 191
CviQI	GTAC	3 cut(s)	94, 222, 307
DdeI	CTNAG	1 cut(s)	35
DpnI	GATC	2 cut(s)	239, 534
DpnII	GATC	2 cut(s)	237, 532
DraI	TTTAAA	1 cut(s)	153
EaeI	YGGCCR	1 cut(s)	550
Eam1104I	CTCTTC	1 cut(s)	459
EarI	CTCTTC	1 cut(s)	459
Ecl136II	GAGCTC	1 cut(s)	446
Eco130I	CCWWGG	2 cut(s)	279, 528
Eco147I	AGGCCT	1 cut(s)	169
Eco24I	GRGCYC	1 cut(s)	448
Eco53kI	GAGCTC	1 cut(s)	446
Eco57I	CTGAAG	1 cut(s)	364
Eco88I	CYCGRG	1 cut(s)	513
EcoICRI	GAGCTC	1 cut(s)	446
EcoO109I	RGGNCCY	1 cut(s)	501
EcoT14I	CCWWGG	2 cut(s)	279, 528
EcoT38I	GRGCYC	1 cut(s)	448
ErhI	CCWWGG	2 cut(s)	279, 528
FaeI	CATG	2 cut(s)	184, 194
FaiI	YATR	9 cut(s)	161, 182, 192, 202, 276, 323, 351, 454, 456
FatI	CATG	2 cut(s)	180, 190
Fnu4HI	GCNGC	4 cut(s)	32, 258, 267, 553
FokI	GGATG	3 cut(s)	134, 321, 584
FriOI	GRGCYC	1 cut(s)	448
Fsp4HI	GCNGC	4 cut(s)	32, 258, 267, 553
FspBI	CTAG	2 cut(s)	231, 449
GluI	GCNGC	4 cut(s)	32, 258, 267, 553
HaeIII	GGCC	5 cut(s)	148, 169, 459, 502, 552
Hin1II	CATG	2 cut(s)	184, 194
HinfI	GANTC	2 cut(s)	467, 581
HphI	GGTGA	1 cut(s)	196
Hpy188I	TCNGA	3 cut(s)	383, 427, 586
HpyAV	CCTTC	2 cut(s)	112, 199
HpyCH4III	ACNGT	2 cut(s)	221, 245
HpyCH4IV	ACGT	1 cut(s)	478
HpyCH4V	TGCA	3 cut(s)	212, 266, 346
HpyF10VI	GCNNNNNNNGC	5 cut(s)	263, 266, 275, 443, 499
HpyF3I	CTNAG	1 cut(s)	35
HpySE526I	ACGT	1 cut(s)	478
Hsp92II	CATG	2 cut(s)	184, 194
Kzo9I	GATC	2 cut(s)	237, 532
LpnPI	CCDG	7 cut(s)	92, 126, 151, 279, 327, 383, 484
Lsp1109I	GCAGC	3 cut(s)	18, 244, 278
LweI	GCATC	1 cut(s)	333
MaeI	CTAG	2 cut(s)	231, 449
MaeII	ACGT	1 cut(s)	478
MaeIII	GTNAC	1 cut(s)	413
MalI	GATC	2 cut(s)	239, 534
MbiI	CCGCTC	1 cut(s)	518
MboI	GATC	2 cut(s)	237, 532
MboII	GAAGA	2 cut(s)	396, 476
MflI	RGATCY	1 cut(s)	237
MhlI	GDGCHC	1 cut(s)	448
MluCI	AATT	2 cut(s)	18, 324
MlyI	GAGTC	1 cut(s)	476
MnlI	CCTC	6 cut(s)	277, 283, 366, 421, 424, 514
MseI	TTAA	2 cut(s)	21, 152
MspA1I	CMGCKG	1 cut(s)	31
MwoI	GCNNNNNNNGC	5 cut(s)	263, 266, 275, 443, 499
NdeII	GATC	2 cut(s)	237, 532
NlaIII	CATG	2 cut(s)	184, 194
NlaIV	GGNNCC	1 cut(s)	239
NspI	RCATGY	1 cut(s)	194
PceI	AGGCCT	1 cut(s)	169
PciI	ACATGT	1 cut(s)	190
PfeI	GAWTC	1 cut(s)	581
PkrI	GCNGC	4 cut(s)	33, 259, 268, 554
PleI	GAGTC	1 cut(s)	475
PpsI	GAGTC	1 cut(s)	475
PscI	ACATGT	1 cut(s)	190
Psp124BI	GAGCTC	1 cut(s)	448
PspN4I	GGNNCC	1 cut(s)	239
PspPI	GGNCC	1 cut(s)	501
PsuI	RGATCY	1 cut(s)	237
PvuII	CAGCTG	1 cut(s)	31
RsaI	GTAC	3 cut(s)	95, 223, 308
RsaNI	GTAC	3 cut(s)	94, 222, 307
SacI	GAGCTC	1 cut(s)	448
SaqAI	TTAA	2 cut(s)	21, 152
SatI	GCNGC	4 cut(s)	32, 258, 267, 553
Sau3AI	GATC	2 cut(s)	237, 532
Sau96I	GGNCC	1 cut(s)	501
ScaI	AGTACT	1 cut(s)	223
SchI	GAGTC	1 cut(s)	476
SduI	GDGCHC	1 cut(s)	448
SfaNI	GCATC	1 cut(s)	333
Sse9I	AATT	2 cut(s)	18, 324
SseBI	AGGCCT	1 cut(s)	169
SsiI	CCGC	2 cut(s)	518, 553
SspMI	CTAG	2 cut(s)	231, 449
SstI	GAGCTC	1 cut(s)	448
StuI	AGGCCT	1 cut(s)	169
StyI	CCWWGG	2 cut(s)	279, 528
TaaI	ACNGT	2 cut(s)	221, 245
TaiI	ACGT	1 cut(s)	481
TasI	AATT	2 cut(s)	18, 324
TatI	WGTACW	3 cut(s)	93, 221, 306
TauI	GCSGC	1 cut(s)	555
TfiI	GAWTC	1 cut(s)	581
Tru1I	TTAA	2 cut(s)	21, 152
Tru9I	TTAA	2 cut(s)	21, 152
TscAI	CASTG	1 cut(s)	250
TseI	GCWGC	3 cut(s)	31, 257, 266
TspDTI	ATGAA	3 cut(s)	169, 323, 383
TspGWI	ACGGA	1 cut(s)	43
TspRI	CASTG	1 cut(s)	250
XceI	RCATGY	1 cut(s)	194
XcmI	CCANNNNNNNNNTGG	1 cut(s)	55
XspI	CTAG	2 cut(s)	231, 449
ZrmI	AGTACT	1 cut(s)	223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.