Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8187728.1

Orthogroup ID

OG0001366

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 678

Gene Structure 678 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8187728.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

atgcaacatattcctctttgggttctcaaatggcaaggacttcagaagaaagtgatttttgtgacggtgatcactgatctcaacacttgccatcctacatggtttcatccaggggtcaataggtgttactgcccatcacaggaggtagctaaacgggctctagtagatggccttgaagagtcccaaatacgcgtttttggcttgcccatcaggccctcttttgcccgagcggttatctccaaggatcaactcagaaaagaactcgaaatggaccctgaattgcctgcagtattgctgatgggaggtggtgaaggaatggggcctgtaaaggaaactgcgagagctctgggagaatccctctttgataaagaactggggaaaccaattgggcagctgatcgttatatgtggccgcaataaaaacctggtctccacactggaatctgatgagtggaatatcccagtcaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006643 GO:0006664 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008194 GO:0008378 GO:0009267 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009605 GO:0009707 GO:0009941 GO:0009987 GO:0009991 GO:0016020 GO:0016036 GO:0016740 GO:0016757 GO:0016758 GO:0019374 GO:0019752 GO:0019867 GO:0031090 GO:0031667 GO:0031668 GO:0031669 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032787 GO:0033554 GO:0035250 GO:0042170 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0071496 GO:0071704 GO:0098588 GO:0098805 GO:1901135 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00561 ko01100 map00561 map01100

Pfam Domains

Protein Families

Glyco_tran_28_C MGDG_synth

Protein Analysis

156

Amino Acids

17.46

Weight (kDa)

7.68

Isoelectric Point (pI)

41.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001366)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G11810 AT2G11810 AT2G11810 AT2G11810 AT5G20410
fragaria_vesca	FvH4_1g02220 FvH4_1g02220 FvH4_1g02220 FvH4_1g21680
malus_domestica	MD02G1020400.v1.1 MD15G1163200.v1.1
prunus_persica	Prupe.7G251400_v2.0.a1
pyrus_communis	pycom02g01790 pycom15g14680
rosa_chinensis	RchiOBHm_Chr2g0087331 RchiOBHm_Chr3g0481741 RchiOBHm_Chr4g0421821 RchiOBHm_Chr6g0246901
rosa_laevigata	RLG00000003836 RLG00000015857
rosa_multiflora	Rmu_co8187728.1_g000001 Rmu_co8222200.1_g000001 Rmu_sc0000540.1_g000032 Rmu_sc0003367.1_g000024 Rmu_sc0006064.1_g000001 Rmu_sc0007105.1_g000003 Rmu_sc0016592.1_g000001 Rmu_sc0037595.1_g000001
rosa_roxburghii	Rroxscaffold_1G00028410 Rroxscaffold_2G00111080 Rroxscaffold_2G00153680 Rroxscaffold_3G00242830 Rroxscaffold_4G00276430 Rroxscaffold_4G00300210 Rroxscaffold_7G00214190
rosa_rugosa	Rorug01G0474200
rosa_samantha	Rh1CG122800 Rh2AG027800 Rh2AG631400 Rh2BG027300 Rh2BG300600 Rh2CG028100 Rh2DG027900 Rh4BG234200 Rh5CG220000 Rh6BG190700 Rh6CG106700 Rh6CG108200 Rh6DG097200 Rh6DG098600 Rh7CG224800
rosa_wichuraiana	Rw1G013320 Rw2G002200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	230
AccII	CGCG	1 cut(s)	192
AciI	CCGC	2 cut(s)	230, 412
AclWI	GGATC	1 cut(s)	252
AcoI	YGGCCR	1 cut(s)	409
AcuI	CTGAAG	1 cut(s)	26
AfiI	CCNNNNNNNGG	1 cut(s)	139
AflIII	ACRYGT	1 cut(s)	190
AgsI	TTSAA	1 cut(s)	176
AjnI	CCWGG	2 cut(s)	109, 423
AluBI	AGCT	3 cut(s)	149, 344, 394
AluI	AGCT	3 cut(s)	149, 344, 394
Alw21I	GWGCWC	1 cut(s)	346
Alw26I	GTCTC	1 cut(s)	433
AlwI	GGATC	1 cut(s)	252
Ama87I	CYCGRG	1 cut(s)	225
AoxI	GGCC	4 cut(s)	169, 212, 320, 409
ApeKI	GCWGC	1 cut(s)	391
AspS9I	GGNCC	3 cut(s)	213, 271, 320
AsuHPI	GGTGA	2 cut(s)	79, 320
AvaI	CYCGRG	1 cut(s)	225
AvaII	GGWCC	1 cut(s)	271
BanII	GRGCYC	2 cut(s)	160, 346
Bbv12I	GWGCWC	1 cut(s)	346
BbvI	GCAGC	1 cut(s)	403
BccI	CCATC	5 cut(s)	99, 142, 161, 215, 292
BciT130I	CCWGG	2 cut(s)	111, 425
BclI	TGATCA	1 cut(s)	69
BcoDI	GTCTC	1 cut(s)	433
BfaI	CTAG	1 cut(s)	161
BfmI	CTRYAG	1 cut(s)	285
BglI	GCCNNNNNGGC	1 cut(s)	211
BisI	GCNGC	2 cut(s)	392, 412
BlsI	GCNGC	2 cut(s)	393, 413
Bme1390I	CCNGG	2 cut(s)	111, 425
Bme18I	GGWCC	1 cut(s)	271
BmeT110I	CYCGRG	1 cut(s)	225
BmgT120I	GGNCC	3 cut(s)	213, 271, 320
BmiI	GGNNCC	2 cut(s)	273, 321
BmrFI	CCNGG	2 cut(s)	111, 425
BmrI	ACTGGG	2 cut(s)	383, 455
BmuI	ACTGGG	2 cut(s)	383, 455
BplI	GAGNNNNNCTC	2 cut(s)	342, 374
BsaI	GGTCTC	1 cut(s)	433
BsaJI	CCNNGG	2 cut(s)	110, 240
BsaXI	ACNNNNNCTCC	2 cut(s)	413, 443
Bsc4I	CCNNNNNNNGG	1 cut(s)	139
Bse1I	ACTGG	3 cut(s)	378, 441, 461
BseBI	CCWGG	2 cut(s)	111, 425
BseDI	CCNNGG	2 cut(s)	110, 240
BseGI	GGATG	2 cut(s)	91, 106
BseLI	CCNNNNNNNGG	1 cut(s)	139
BseMII	CTCAG	1 cut(s)	265
BseNI	ACTGG	3 cut(s)	378, 441, 461
BseXI	GCAGC	1 cut(s)	403
Bsh1236I	CGCG	1 cut(s)	192
BshFI	GGCC	4 cut(s)	171, 214, 322, 411
BsiHKAI	GWGCWC	1 cut(s)	346
BsiHKCI	CYCGRG	1 cut(s)	225
BslFI	GGGAC	1 cut(s)	166
BslI	CCNNNNNNNGG	1 cut(s)	139
BsmAI	GTCTC	1 cut(s)	433
BsmFI	GGGAC	1 cut(s)	166
BsnI	GGCC	4 cut(s)	171, 214, 322, 411
Bso31I	GGTCTC	1 cut(s)	433
BsoBI	CYCGRG	1 cut(s)	225
Bsp1286I	GDGCHC	2 cut(s)	160, 346
Bsp143I	GATC	4 cut(s)	69, 76, 244, 396
BspACI	CCGC	2 cut(s)	230, 412
BspANI	GGCC	4 cut(s)	171, 214, 322, 411
BspCNI	CTCAG	1 cut(s)	264
BspFNI	CGCG	1 cut(s)	192
BspLI	GGNNCC	2 cut(s)	273, 321
BspMAI	CTGCAG	1 cut(s)	289
BspPI	GGATC	1 cut(s)	252
BspTNI	GGTCTC	1 cut(s)	433
BsrBI	CCGCTC	1 cut(s)	230
BsrI	ACTGG	3 cut(s)	378, 441, 461
BssECI	CCNNGG	2 cut(s)	110, 240
BssMI	GATC	4 cut(s)	69, 76, 244, 396
BssT1I	CCWWGG	1 cut(s)	240
Bst2UI	CCWGG	2 cut(s)	111, 425
Bst4CI	ACNGT	1 cut(s)	67
Bst6I	CTCTTC	1 cut(s)	171
BstC8I	GCNNGC	2 cut(s)	203, 285
BstDEI	CTNAG	1 cut(s)	251
BstF5I	GGATG	2 cut(s)	91, 106
BstFNI	CGCG	1 cut(s)	192
BstKTI	GATC	4 cut(s)	72, 79, 247, 399
BstMAI	GTCTC	1 cut(s)	433
BstMBI	GATC	4 cut(s)	69, 76, 244, 396
BstMWI	GCNNNNNNNGC	3 cut(s)	155, 198, 211
BstNI	CCWGG	2 cut(s)	111, 425
BstSCI	CCNGG	2 cut(s)	109, 423
BstSFI	CTRYAG	1 cut(s)	285
BstUI	CGCG	1 cut(s)	192
BstV1I	GCAGC	1 cut(s)	403
BsuRI	GGCC	4 cut(s)	171, 214, 322, 411
BtsCI	GGATG	2 cut(s)	91, 106
BtsIMutI	CAGTG	2 cut(s)	72, 434
Cac8I	GCNNGC	2 cut(s)	203, 285
Cfr13I	GGNCC	3 cut(s)	213, 271, 320
CsiI	ACCWGGT	1 cut(s)	423
CviAII	CATG	1 cut(s)	99
CviJI	RGCY	9 cut(s)	149, 158, 171, 201, 214, 322, 344, 394, 411
CviKI_1	RGCY	9 cut(s)	149, 158, 171, 201, 214, 322, 344, 394, 411
DdeI	CTNAG	1 cut(s)	251
DpnI	GATC	4 cut(s)	71, 78, 246, 398
DpnII	GATC	4 cut(s)	69, 76, 244, 396
EaeI	YGGCCR	1 cut(s)	409
Eam1104I	CTCTTC	1 cut(s)	171
EarI	CTCTTC	1 cut(s)	171
Ecl136II	GAGCTC	1 cut(s)	344
Eco130I	CCWWGG	1 cut(s)	240
Eco24I	GRGCYC	2 cut(s)	160, 346
Eco31I	GGTCTC	1 cut(s)	433
Eco47I	GGWCC	1 cut(s)	271
Eco53kI	GAGCTC	1 cut(s)	344
Eco57I	CTGAAG	1 cut(s)	26
Eco88I	CYCGRG	1 cut(s)	225
EcoICRI	GAGCTC	1 cut(s)	344
EcoO109I	RGGNCCY	2 cut(s)	213, 320
EcoRII	CCWGG	2 cut(s)	109, 423
EcoT14I	CCWWGG	1 cut(s)	240
EcoT38I	GRGCYC	2 cut(s)	160, 346
ErhI	CCWWGG	1 cut(s)	240
FaeI	CATG	1 cut(s)	102
FaiI	YATR	4 cut(s)	9, 100, 404, 406
FaqI	GGGAC	1 cut(s)	166
FatI	CATG	1 cut(s)	98
FbaI	TGATCA	1 cut(s)	69
Fnu4HI	GCNGC	2 cut(s)	392, 412
FokI	GGATG	2 cut(s)	78, 93
FriOI	GRGCYC	2 cut(s)	160, 346
Fsp4HI	GCNGC	2 cut(s)	392, 412
FspBI	CTAG	1 cut(s)	161
GluI	GCNGC	2 cut(s)	392, 412
HaeIII	GGCC	4 cut(s)	171, 214, 322, 411
Hin1II	CATG	1 cut(s)	102
HinfI	GANTC	3 cut(s)	179, 353, 440
HphI	GGTGA	2 cut(s)	79, 320
Hpy188I	TCNGA	3 cut(s)	45, 254, 445
HpyAV	CCTTC	1 cut(s)	305
HpyCH4III	ACNGT	1 cut(s)	67
HpyCH4V	TGCA	2 cut(s)	4, 287
HpyF10VI	GCNNNNNNNGC	3 cut(s)	155, 198, 211
HpyF3I	CTNAG	1 cut(s)	251
Hsp92II	CATG	1 cut(s)	102
Ksp22I	TGATCA	1 cut(s)	69
Kzo9I	GATC	4 cut(s)	69, 76, 244, 396
Lsp1109I	GCAGC	1 cut(s)	403
MabI	ACCWGGT	1 cut(s)	423
MaeI	CTAG	1 cut(s)	161
MaeIII	GTNAC	2 cut(s)	61, 125
MalI	GATC	4 cut(s)	71, 78, 246, 398
MbiI	CCGCTC	1 cut(s)	230
MboI	GATC	4 cut(s)	69, 76, 244, 396
MboII	GAAGA	2 cut(s)	58, 188
MfeI	CAATTG	1 cut(s)	384
MhlI	GDGCHC	2 cut(s)	160, 346
MluCI	AATT	2 cut(s)	278, 384
MluI	ACGCGT	1 cut(s)	190
MlyI	GAGTC	1 cut(s)	188
MnlI	CCTC	5 cut(s)	24, 136, 226, 296, 368
MspA1I	CMGCKG	1 cut(s)	394
MspR9I	CCNGG	2 cut(s)	111, 425
MunI	CAATTG	1 cut(s)	384
MvaI	CCWGG	2 cut(s)	111, 425
MvnI	CGCG	1 cut(s)	192
MwoI	GCNNNNNNNGC	3 cut(s)	155, 198, 211
NdeII	GATC	4 cut(s)	69, 76, 244, 396
NlaIII	CATG	1 cut(s)	102
NlaIV	GGNNCC	2 cut(s)	273, 321
NmuCI	GTSAC	1 cut(s)	61
PfeI	GAWTC	2 cut(s)	353, 440
PkrI	GCNGC	2 cut(s)	393, 413
PleI	GAGTC	1 cut(s)	187
PpsI	GAGTC	1 cut(s)	187
Psp124BI	GAGCTC	1 cut(s)	346
Psp6I	CCWGG	2 cut(s)	109, 423
PspGI	CCWGG	2 cut(s)	109, 423
PspN4I	GGNNCC	2 cut(s)	273, 321
PspPI	GGNCC	3 cut(s)	213, 271, 320
PstI	CTGCAG	1 cut(s)	289
PvuII	CAGCTG	1 cut(s)	394
SacI	GAGCTC	1 cut(s)	346
SatI	GCNGC	2 cut(s)	392, 412
Sau3AI	GATC	4 cut(s)	69, 76, 244, 396
Sau96I	GGNCC	3 cut(s)	213, 271, 320
SchI	GAGTC	1 cut(s)	188
ScrFI	CCNGG	2 cut(s)	111, 425
SduI	GDGCHC	2 cut(s)	160, 346
SetI	ASST	7 cut(s)	125, 147, 151, 307, 346, 396, 426
SexAI	ACCWGGT	1 cut(s)	423
SfcI	CTRYAG	1 cut(s)	285
SinI	GGWCC	1 cut(s)	271
Sse9I	AATT	2 cut(s)	278, 384
SsiI	CCGC	2 cut(s)	230, 412
SspMI	CTAG	1 cut(s)	161
SstI	GAGCTC	1 cut(s)	346
StyD4I	CCNGG	2 cut(s)	109, 423
StyI	CCWWGG	1 cut(s)	240
TaaI	ACNGT	1 cut(s)	67
TaqI	TCGA	1 cut(s)	264
TasI	AATT	2 cut(s)	278, 384
TauI	GCSGC	1 cut(s)	414
TfiI	GAWTC	2 cut(s)	353, 440
TscAI	CASTG	2 cut(s)	79, 441
TseFI	GTSAC	1 cut(s)	61
TseI	GCWGC	1 cut(s)	391
Tsp45I	GTSAC	1 cut(s)	61
TspDTI	ATGAA	1 cut(s)	95
TspRI	CASTG	2 cut(s)	79, 441
VpaK11BI	GGWCC	1 cut(s)	271
XspI	CTAG	1 cut(s)	161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.