Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001366

Physical Location & Seq

Genomic Coordinates Forward (+)

16985 .. 31917

Gene Structure 14933 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00276430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGGAACCCAAATCCATCACCCAATCGATTTCACAAACCTCATCATCTCCTTTTACATATCCCCCACGTTGGATGCTAAATGCTAAGCACACATATGTTTATCGCGAAGCATCTCCGATGAGGTCTTGGTTGGCTTCCACCATGACGAGGTTCAAGCTAGTATGTGAGAAAAACTACCCGTTTCAGCTGCTTAGAGAAGCTAGCACTTCCGTTTTGGAGATACCGAAACTTGATGTTATCTCATTTTTGTACATTCCAATACAGGATGTGTGGAAAGAATACACAGGTTGGCCTTTAAATAATATGGAGAGGTCTTACAAGTTCATGGTGAGACATGTTCAGCTATGGAAGGTTGCATTTCACAGTACTTCTCCTAGATGGATCCACAGTGTCTATCTTGCTGCCATTGCAGCCTACTATGCCAAGGATGTGGAGGCTTGTCTAATGGAGTACAAGCCGTACATCATAATTAGTGTTCATCCTTTGATGCAACATATTCCTCTTTTCTCAAATGGCAAGGACTTCGAAGAAGGTGATTTTTGTGACGTTGATTACCGATCTCAACACTTGCCATCCTACATGCCTCAGAAATACCATACAGTATCTAACATTGTAAAATCATCATGCAGGTTTCATCCGGGGGTCAATAGGTGTTACCGCCCGTCGGAGGAGGTAGCTAAAAGAGCTCTAGTATATGGCCTTGAAGAGTCCCAAATACGTGTTTTTGGCTTGCCCATCGTGCCCTCTTTTGCCCGAGCGGTTATCTCCAAGCTAATGCTGTCGACAGCTGCAGCATGCTGCCGACATGCTGCGCCCCATGCTGCTGAGCCCTTCACACGACAGTTCCCTACAATTGATCTTCATCAGATGGTGCCTCGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006643 GO:0006664 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008194 GO:0008378 GO:0009267 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009605 GO:0009707 GO:0009941 GO:0009987 GO:0009991 GO:0016020 GO:0016036 GO:0016740 GO:0016757 GO:0016758 GO:0019374 GO:0019752 GO:0019867 GO:0031090 GO:0031667 GO:0031668 GO:0031669 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032787 GO:0033554 GO:0035250 GO:0042170 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0071496 GO:0071704 GO:0098588 GO:0098805 GO:1901135 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00561 ko01100 map00561 map01100

Pfam Domains

Protein Families

Glyco_tran_28_C MGDG_synth

Protein Analysis

293

Amino Acids

33.98

Weight (kDa)

9.14

Isoelectric Point (pI)

55.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MGDG_synth	PF06925	87 - 168	2.1e-21	Monogalactosyldiacylglycerol (MGDG) synthase
MGDG_synth	PF06925	211 - 246	7.8e-06	Monogalactosyldiacylglycerol (MGDG) synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001366)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G11810 AT2G11810 AT2G11810 AT2G11810 AT5G20410
fragaria_vesca	FvH4_1g02220 FvH4_1g02220 FvH4_1g02220 FvH4_1g21680
malus_domestica	MD02G1020400.v1.1 MD15G1163200.v1.1
prunus_persica	Prupe.7G251400_v2.0.a1
pyrus_communis	pycom02g01790 pycom15g14680
rosa_chinensis	RchiOBHm_Chr2g0087331 RchiOBHm_Chr3g0481741 RchiOBHm_Chr4g0421821 RchiOBHm_Chr6g0246901
rosa_laevigata	RLG00000003836 RLG00000015857
rosa_multiflora	Rmu_co8187728.1_g000001 Rmu_co8222200.1_g000001 Rmu_sc0000540.1_g000032 Rmu_sc0003367.1_g000024 Rmu_sc0006064.1_g000001 Rmu_sc0007105.1_g000003 Rmu_sc0016592.1_g000001 Rmu_sc0037595.1_g000001
rosa_roxburghii	Rroxscaffold_1G00028410 Rroxscaffold_2G00111080 Rroxscaffold_2G00153680 Rroxscaffold_3G00242830 Rroxscaffold_4G00276430 Rroxscaffold_4G00300210 Rroxscaffold_7G00214190
rosa_rugosa	Rorug01G0474200
rosa_samantha	Rh1CG122800 Rh2AG027800 Rh2AG631400 Rh2BG027300 Rh2BG300600 Rh2CG028100 Rh2DG027900 Rh4BG234200 Rh5CG220000 Rh6BG190700 Rh6CG106700 Rh6CG108200 Rh6DG097200 Rh6DG098600 Rh7CG224800
rosa_wichuraiana	Rw1G013320 Rw2G002200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	618
AccB1I	GGYRCC	1 cut(s)	871
AccBSI	CCGCTC	1 cut(s)	758
AccI	GTMKAC	1 cut(s)	782
AccII	CGCG	1 cut(s)	105
AciI	CCGC	2 cut(s)	658, 758
AclWI	GGATC	2 cut(s)	376, 389
AfaI	GTAC	4 cut(s)	251, 367, 452, 461
AfiI	CCNNNNNNNGG	4 cut(s)	69, 147, 664, 667
AflIII	ACRYGT	2 cut(s)	334, 718
AgsI	TTSAA	2 cut(s)	154, 704
AluBI	AGCT	8 cut(s)	157, 187, 200, 343, 677, 686, 772, 788
AluI	AGCT	8 cut(s)	157, 187, 200, 343, 677, 686, 772, 788
Alw21I	GWGCWC	1 cut(s)	688
Alw26I	GTCTC	1 cut(s)	325
AlwI	GGATC	2 cut(s)	376, 389
Ama87I	CYCGRG	1 cut(s)	753
AoxI	GGCC	2 cut(s)	290, 697
ApeKI	GCWGC	8 cut(s)	187, 401, 410, 788, 791, 798, 809, 821
AspLEI	GCGC	1 cut(s)	814
AsuC2I	CCSGG	1 cut(s)	639
AsuHPI	GGTGA	3 cut(s)	10, 340, 545
AsuII	TTCGAA	1 cut(s)	525
AsuNHI	GCTAGC	1 cut(s)	200
AvaI	CYCGRG	1 cut(s)	753
BaeGI	GKGCMC	1 cut(s)	744
BamHI	GGATCC	1 cut(s)	381
BanI	GGYRCC	1 cut(s)	871
BanII	GRGCYC	2 cut(s)	688, 831
Bbv12I	GWGCWC	1 cut(s)	688
BbvI	GCAGC	8 cut(s)	174, 388, 422, 775, 785, 796, 803, 808
BccI	CCATC	5 cut(s)	23, 372, 580, 743, 862
BceAI	ACGGC	1 cut(s)	442
BcgI	CGANNNNNNTGC	2 cut(s)	505, 539
BcnI	CCSGG	1 cut(s)	639
BcoDI	GTCTC	1 cut(s)	325
BfaI	CTAG	4 cut(s)	158, 201, 375, 689
BfmI	CTRYAG	1 cut(s)	789
BfuAI	ACCTGC	1 cut(s)	618
BisI	GCNGC	8 cut(s)	188, 402, 411, 789, 792, 799, 810, 822
BlpI	GCTNAGC	2 cut(s)	84, 825
BlsI	GCNGC	8 cut(s)	189, 403, 412, 790, 793, 800, 811, 823
BmcAI	AGTACT	1 cut(s)	367
Bme1390I	CCNGG	1 cut(s)	639
BmeT110I	CYCGRG	1 cut(s)	753
BmiI	GGNNCC	3 cut(s)	6, 383, 873
BmrFI	CCNGG	1 cut(s)	639
BmsI	GCATC	3 cut(s)	63, 119, 477
BmtI	GCTAGC	1 cut(s)	204
Bpu1102I	GCTNAGC	2 cut(s)	84, 825
Bpu14I	TTCGAA	1 cut(s)	525
BpuMI	CCSGG	1 cut(s)	639
Bsa29I	ATCGAT	1 cut(s)	26
BsaAI	YACGTR	1 cut(s)	719
BsaBI	GATNNNNATC	1 cut(s)	861
BsaJI	CCNNGG	2 cut(s)	423, 638
Bsc4I	CCNNNNNNNGG	4 cut(s)	69, 147, 664, 667
Bse3DI	GCAATG	1 cut(s)	405
Bse8I	GATNNNNATC	1 cut(s)	861
BseCI	ATCGAT	1 cut(s)	26
BseDI	CCNNGG	2 cut(s)	423, 638
BseGI	GGATG	6 cut(s)	78, 271, 433, 478, 572, 634
BseJI	GATNNNNATC	1 cut(s)	861
BseLI	CCNNNNNNNGG	4 cut(s)	69, 147, 664, 667
BseMI	GCAATG	1 cut(s)	405
BseMII	CTCAG	2 cut(s)	599, 816
BseRI	GAGGAG	1 cut(s)	683
BseSI	GKGCMC	1 cut(s)	744
BseXI	GCAGC	8 cut(s)	174, 388, 422, 775, 785, 796, 803, 808
Bsh1236I	CGCG	1 cut(s)	105
BshFI	GGCC	2 cut(s)	292, 699
BshNI	GGYRCC	1 cut(s)	871
BshVI	ATCGAT	1 cut(s)	26
BsiHKAI	GWGCWC	1 cut(s)	688
BsiHKCI	CYCGRG	1 cut(s)	753
BsiSI	CCGG	1 cut(s)	638
BslFI	GGGAC	1 cut(s)	694
BslI	CCNNNNNNNGG	4 cut(s)	69, 147, 664, 667
BsmAI	GTCTC	1 cut(s)	325
BsmFI	GGGAC	1 cut(s)	694
BsnI	GGCC	2 cut(s)	292, 699
BsoBI	CYCGRG	1 cut(s)	753
Bsp119I	TTCGAA	1 cut(s)	525
Bsp1286I	GDGCHC	3 cut(s)	688, 744, 831
Bsp1407I	TGTACA	1 cut(s)	249
Bsp143I	GATC	3 cut(s)	381, 557, 856
Bsp1720I	GCTNAGC	2 cut(s)	84, 825
Bsp68I	TCGCGA	1 cut(s)	105
BspACI	CCGC	2 cut(s)	658, 758
BspANI	GGCC	2 cut(s)	292, 699
BspCNI	CTCAG	2 cut(s)	598, 817
BspDI	ATCGAT	1 cut(s)	26
BspFNI	CGCG	1 cut(s)	105
BspLI	GGNNCC	3 cut(s)	6, 383, 873
BspMAI	CTGCAG	1 cut(s)	793
BspMI	ACCTGC	1 cut(s)	618
BspOI	GCTAGC	1 cut(s)	204
BspPI	GGATC	2 cut(s)	376, 389
BspT104I	TTCGAA	1 cut(s)	525
BspT107I	GGYRCC	1 cut(s)	871
BsrBI	CCGCTC	1 cut(s)	758
BsrDI	GCAATG	1 cut(s)	405
BsrGI	TGTACA	1 cut(s)	249
BssECI	CCNNGG	2 cut(s)	423, 638
BssMI	GATC	3 cut(s)	381, 557, 856
BssT1I	CCWWGG	1 cut(s)	423
Bst4CI	ACNGT	4 cut(s)	365, 389, 601, 843
Bst6I	CTCTTC	1 cut(s)	699
BstAUI	TGTACA	1 cut(s)	249
BstBAI	YACGTR	1 cut(s)	719
BstBI	TTCGAA	1 cut(s)	525
BstC8I	GCNNGC	3 cut(s)	202, 731, 796
BstDEI	CTNAG	4 cut(s)	84, 191, 585, 825
BstF5I	GGATG	6 cut(s)	78, 271, 433, 478, 572, 634
BstFNI	CGCG	1 cut(s)	105
BstHHI	GCGC	1 cut(s)	814
BstKTI	GATC	3 cut(s)	384, 560, 859
BstMAI	GTCTC	1 cut(s)	325
BstMBI	GATC	3 cut(s)	381, 557, 856
BstMWI	GCNNNNNNNGC	6 cut(s)	407, 410, 419, 683, 739, 818
BstNSI	RCATGY	4 cut(s)	338, 583, 798, 809
BstSCI	CCNGG	1 cut(s)	637
BstSFI	CTRYAG	1 cut(s)	789
BstSLI	GKGCMC	1 cut(s)	744
BstUI	CGCG	1 cut(s)	105
BstV1I	GCAGC	8 cut(s)	174, 388, 422, 775, 785, 796, 803, 808
BstX2I	RGATCY	1 cut(s)	381
BstXI	CCANNNNNNTGG	1 cut(s)	430
BstYI	RGATCY	1 cut(s)	381
Bsu15I	ATCGAT	1 cut(s)	26
BsuRI	GGCC	2 cut(s)	292, 699
BsuTUI	ATCGAT	1 cut(s)	26
BtsCI	GGATG	6 cut(s)	78, 271, 433, 478, 572, 634
BtsIMutI	CAGTG	1 cut(s)	394
BtuMI	TCGCGA	1 cut(s)	105
BveI	ACCTGC	1 cut(s)	618
Cac8I	GCNNGC	3 cut(s)	202, 731, 796
CfoI	GCGC	1 cut(s)	814
ClaI	ATCGAT	1 cut(s)	26
Csp6I	GTAC	4 cut(s)	250, 366, 451, 460
CviAII	CATG	8 cut(s)	142, 325, 335, 580, 624, 795, 806, 818
CviQI	GTAC	4 cut(s)	250, 366, 451, 460
DdeI	CTNAG	4 cut(s)	84, 191, 585, 825
DpnI	GATC	3 cut(s)	383, 559, 858
DpnII	GATC	3 cut(s)	381, 557, 856
DraI	TTTAAA	1 cut(s)	297
Eam1104I	CTCTTC	1 cut(s)	699
EarI	CTCTTC	1 cut(s)	699
Ecl136II	GAGCTC	1 cut(s)	686
Eco130I	CCWWGG	1 cut(s)	423
Eco24I	GRGCYC	2 cut(s)	688, 831
Eco53kI	GAGCTC	1 cut(s)	686
Eco88I	CYCGRG	1 cut(s)	753
EcoICRI	GAGCTC	1 cut(s)	686
EcoT14I	CCWWGG	1 cut(s)	423
EcoT38I	GRGCYC	2 cut(s)	688, 831
ErhI	CCWWGG	1 cut(s)	423
FaeI	CATG	8 cut(s)	145, 328, 338, 583, 627, 798, 809, 821
FaqI	GGGAC	1 cut(s)	694
FatI	CATG	8 cut(s)	141, 324, 334, 579, 623, 794, 805, 817
FauNDI	CATATG	1 cut(s)	94
FblI	GTMKAC	1 cut(s)	782
Fnu4HI	GCNGC	8 cut(s)	188, 402, 411, 789, 792, 799, 810, 822
FokI	GGATG	6 cut(s)	85, 278, 440, 465, 559, 621
FriOI	GRGCYC	2 cut(s)	688, 831
Fsp4HI	GCNGC	8 cut(s)	188, 402, 411, 789, 792, 799, 810, 822
FspBI	CTAG	4 cut(s)	158, 201, 375, 689
GlaI	GCGC	1 cut(s)	813
GluI	GCNGC	8 cut(s)	188, 402, 411, 789, 792, 799, 810, 822
HaeIII	GGCC	2 cut(s)	292, 699
HapII	CCGG	1 cut(s)	638
HhaI	GCGC	1 cut(s)	814
Hin1II	CATG	8 cut(s)	145, 328, 338, 583, 627, 798, 809, 821
Hin6I	GCGC	1 cut(s)	812
HinP1I	GCGC	1 cut(s)	812
HincII	GTYRAC	1 cut(s)	783
HindII	GTYRAC	1 cut(s)	783
HinfI	GANTC	1 cut(s)	707
HpaII	CCGG	1 cut(s)	638
HphI	GGTGA	3 cut(s)	10, 340, 545
Hpy166II	GTNNAC	1 cut(s)	783
Hpy188I	TCNGA	4 cut(s)	117, 588, 667, 867
Hpy188III	TCNNGA	1 cut(s)	104
Hpy8I	GTNNAC	1 cut(s)	783
Hpy99I	CGWCG	1 cut(s)	667
HpyAV	CCTTC	3 cut(s)	343, 524, 841
HpyCH4III	ACNGT	4 cut(s)	365, 389, 601, 843
HpyCH4IV	ACGT	3 cut(s)	67, 546, 718
HpyCH4V	TGCA	5 cut(s)	356, 410, 490, 627, 791
HpyF10VI	GCNNNNNNNGC	6 cut(s)	407, 410, 419, 683, 739, 818
HpyF3I	CTNAG	4 cut(s)	84, 191, 585, 825
HpySE526I	ACGT	3 cut(s)	67, 546, 718
Hsp92II	CATG	8 cut(s)	145, 328, 338, 583, 627, 798, 809, 821
HspAI	GCGC	1 cut(s)	812
Kzo9I	GATC	3 cut(s)	381, 557, 856
LpnPI	CCDG	4 cut(s)	248, 270, 613, 651
Lsp1109I	GCAGC	8 cut(s)	174, 388, 422, 775, 785, 796, 803, 808
LweI	GCATC	3 cut(s)	63, 119, 477
MaeI	CTAG	4 cut(s)	158, 201, 375, 689
MaeII	ACGT	3 cut(s)	67, 546, 718
MaeIII	GTNAC	2 cut(s)	542, 653
MalI	GATC	3 cut(s)	383, 559, 858
MbiI	CCGCTC	1 cut(s)	758
MboI	GATC	3 cut(s)	381, 557, 856
MboII	GAAGA	3 cut(s)	539, 716, 851
MfeI	CAATTG	1 cut(s)	852
MflI	RGATCY	1 cut(s)	381
MhlI	GDGCHC	3 cut(s)	688, 744, 831
MluCI	AATT	2 cut(s)	468, 852
MlyI	GAGTC	1 cut(s)	716
MmeI	TCCRAC	2 cut(s)	50, 645
MseI	TTAA	1 cut(s)	296
MslI	CAYNNNNRTG	1 cut(s)	93
MspA1I	CMGCKG	2 cut(s)	187, 788
MspI	CCGG	1 cut(s)	638
MspR9I	CCNGG	1 cut(s)	639
MunI	CAATTG	1 cut(s)	852
MvnI	CGCG	1 cut(s)	105
MwoI	GCNNNNNNNGC	6 cut(s)	407, 410, 419, 683, 739, 818
NciI	CCSGG	1 cut(s)	639
NdeI	CATATG	1 cut(s)	94
NdeII	GATC	3 cut(s)	381, 557, 856
NheI	GCTAGC	1 cut(s)	200
NlaIII	CATG	8 cut(s)	145, 328, 338, 583, 627, 798, 809, 821
NlaIV	GGNNCC	3 cut(s)	6, 383, 873
NmuCI	GTSAC	1 cut(s)	542
NruI	TCGCGA	1 cut(s)	105
NspI	RCATGY	4 cut(s)	338, 583, 798, 809
NspV	TTCGAA	1 cut(s)	525
PaeI	GCATGC	1 cut(s)	798
PciI	ACATGT	1 cut(s)	334
PkrI	GCNGC	8 cut(s)	189, 403, 412, 790, 793, 800, 811, 823
PleI	GAGTC	1 cut(s)	715
PpsI	GAGTC	1 cut(s)	715
Ppu21I	YACGTR	1 cut(s)	719
PscI	ACATGT	1 cut(s)	334
Psp124BI	GAGCTC	1 cut(s)	688
PspN4I	GGNNCC	3 cut(s)	6, 383, 873
PstI	CTGCAG	1 cut(s)	793
PsuI	RGATCY	1 cut(s)	381
PvuII	CAGCTG	2 cut(s)	187, 788
RruI	TCGCGA	1 cut(s)	105
RsaI	GTAC	4 cut(s)	251, 367, 452, 461
RsaNI	GTAC	4 cut(s)	250, 366, 451, 460
RseI	CAYNNNNRTG	1 cut(s)	93
SacI	GAGCTC	1 cut(s)	688
SalI	GTCGAC	1 cut(s)	781
SaqAI	TTAA	1 cut(s)	296
SatI	GCNGC	8 cut(s)	188, 402, 411, 789, 792, 799, 810, 822
Sau3AI	GATC	3 cut(s)	381, 557, 856
ScaI	AGTACT	1 cut(s)	367
SchI	GAGTC	1 cut(s)	716
ScrFI	CCNGG	1 cut(s)	639
SduI	GDGCHC	3 cut(s)	688, 744, 831
SfaNI	GCATC	3 cut(s)	63, 119, 477
SfcI	CTRYAG	1 cut(s)	789
SfuI	TTCGAA	1 cut(s)	525
SmiMI	CAYNNNNRTG	1 cut(s)	93
SphI	GCATGC	1 cut(s)	798
Sse9I	AATT	2 cut(s)	468, 852
SsiI	CCGC	2 cut(s)	658, 758
SspMI	CTAG	4 cut(s)	158, 201, 375, 689
SstI	GAGCTC	1 cut(s)	688
StyD4I	CCNGG	1 cut(s)	637
StyI	CCWWGG	1 cut(s)	423
TaaI	ACNGT	4 cut(s)	365, 389, 601, 843
TaiI	ACGT	3 cut(s)	70, 549, 721
TaqI	TCGA	4 cut(s)	26, 525, 782, 877
TasI	AATT	2 cut(s)	468, 852
TatI	WGTACW	3 cut(s)	249, 365, 450
Tru1I	TTAA	1 cut(s)	296
Tru9I	TTAA	1 cut(s)	296
TscAI	CASTG	1 cut(s)	394
TseFI	GTSAC	1 cut(s)	542
TseI	GCWGC	8 cut(s)	187, 401, 410, 788, 791, 798, 809, 821
Tsp45I	GTSAC	1 cut(s)	542
TspDTI	ATGAA	4 cut(s)	313, 467, 623, 851
TspGWI	ACGGA	1 cut(s)	199
TspRI	CASTG	1 cut(s)	394
XceI	RCATGY	4 cut(s)	338, 583, 798, 809
XmiI	GTMKAC	1 cut(s)	782
XspI	CTAG	4 cut(s)	158, 201, 375, 689
ZrmI	AGTACT	1 cut(s)	367

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.