Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0001366

Physical Location & Seq

Genomic Coordinates Forward (+)

20792722 .. 20793937

Gene Structure 1216 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG224800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGGAGTACAAGCCAGACATCATAATTAGTGTTCATCCTTTGATGCAACATATTCCTCTTTTCTCAAATGGCAAGGACTTCAGAAGAAAGTTTCATCTGGGGGTCAATAGGTGTTACCGCCCATCGGAGGAGGTAGCTAAAAGAGCTCTAGTATATGGCCTTGAAGAGTCTCAAAAACGTGTTTTTGGCTTGCCCATCAGGCCCTCTTTGGCCCGAGCGGTTATCTCCAAGGATCAACTCAGAGGAGAACTCGAAATGGACCCTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006643 GO:0006664 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008194 GO:0008378 GO:0009267 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009605 GO:0009707 GO:0009941 GO:0009987 GO:0009991 GO:0016020 GO:0016036 GO:0016740 GO:0016757 GO:0016758 GO:0019374 GO:0019752 GO:0019867 GO:0031090 GO:0031667 GO:0031668 GO:0031669 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032787 GO:0033554 GO:0035250 GO:0042170 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0071496 GO:0071704 GO:0098588 GO:0098805 GO:1901135 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00561 ko01100 map00561 map01100

Pfam Domains

Protein Families

Glyco_tran_28_C MGDG_synth

Protein Analysis

89

Amino Acids

10.35

Weight (kDa)

9.25

Isoelectric Point (pI)

45.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MGDG_synth	PF06925	1 - 66	2.7e-08	Monogalactosyldiacylglycerol (MGDG) synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001366)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G11810 AT2G11810 AT2G11810 AT2G11810 AT5G20410
fragaria_vesca	FvH4_1g02220 FvH4_1g02220 FvH4_1g02220 FvH4_1g21680
malus_domestica	MD02G1020400.v1.1 MD15G1163200.v1.1
prunus_persica	Prupe.7G251400_v2.0.a1
pyrus_communis	pycom02g01790 pycom15g14680
rosa_chinensis	RchiOBHm_Chr2g0087331 RchiOBHm_Chr3g0481741 RchiOBHm_Chr4g0421821 RchiOBHm_Chr6g0246901
rosa_laevigata	RLG00000003836 RLG00000015857
rosa_multiflora	Rmu_co8187728.1_g000001 Rmu_co8222200.1_g000001 Rmu_sc0000540.1_g000032 Rmu_sc0003367.1_g000024 Rmu_sc0006064.1_g000001 Rmu_sc0007105.1_g000003 Rmu_sc0016592.1_g000001 Rmu_sc0037595.1_g000001
rosa_roxburghii	Rroxscaffold_1G00028410 Rroxscaffold_2G00111080 Rroxscaffold_2G00153680 Rroxscaffold_3G00242830 Rroxscaffold_4G00276430 Rroxscaffold_4G00300210 Rroxscaffold_7G00214190
rosa_rugosa	Rorug01G0474200
rosa_samantha	Rh1CG122800 Rh2AG027800 Rh2AG631400 Rh2BG027300 Rh2BG300600 Rh2CG028100 Rh2DG027900 Rh4BG234200 Rh5CG220000 Rh6BG190700 Rh6CG106700 Rh6CG108200 Rh6DG097200 Rh6DG098600 Rh7CG224800
rosa_wichuraiana	Rw1G013320 Rw2G002200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	218
AciI	CCGC	2 cut(s)	118, 218
AclWI	GGATC	1 cut(s)	240
AcuI	CTGAAG	1 cut(s)	64
AfaI	GTAC	1 cut(s)	8
AfiI	CCNNNNNNNGG	2 cut(s)	124, 127
AflIII	ACRYGT	1 cut(s)	178
AgsI	TTSAA	1 cut(s)	164
AluBI	AGCT	2 cut(s)	137, 146
AluI	AGCT	2 cut(s)	137, 146
Alw21I	GWGCWC	1 cut(s)	148
Alw26I	GTCTC	1 cut(s)	174
AlwI	GGATC	1 cut(s)	240
Ama87I	CYCGRG	1 cut(s)	213
AoxI	GGCC	3 cut(s)	157, 200, 210
AspS9I	GGNCC	3 cut(s)	201, 211, 259
AvaI	CYCGRG	1 cut(s)	213
AvaII	GGWCC	1 cut(s)	259
BanII	GRGCYC	1 cut(s)	148
Bbv12I	GWGCWC	1 cut(s)	148
BccI	CCATC	2 cut(s)	130, 203
BcoDI	GTCTC	1 cut(s)	174
BfaI	CTAG	1 cut(s)	149
BglI	GCCNNNNNGGC	1 cut(s)	199
Bme18I	GGWCC	1 cut(s)	259
BmeT110I	CYCGRG	1 cut(s)	213
BmgT120I	GGNCC	3 cut(s)	201, 211, 259
BmiI	GGNNCC	1 cut(s)	261
BmsI	GCATC	1 cut(s)	33
BplI	GAGNNNNNCTC	2 cut(s)	234, 266
BsaJI	CCNNGG	1 cut(s)	228
Bsc4I	CCNNNNNNNGG	2 cut(s)	124, 127
BseDI	CCNNGG	1 cut(s)	228
BseGI	GGATG	1 cut(s)	34
BseLI	CCNNNNNNNGG	2 cut(s)	124, 127
BseMII	CTCAG	1 cut(s)	253
BseRI	GAGGAG	2 cut(s)	143, 258
BshFI	GGCC	3 cut(s)	159, 202, 212
BsiHKAI	GWGCWC	1 cut(s)	148
BsiHKCI	CYCGRG	1 cut(s)	213
BslI	CCNNNNNNNGG	2 cut(s)	124, 127
BsmAI	GTCTC	1 cut(s)	174
BsnI	GGCC	3 cut(s)	159, 202, 212
BsoBI	CYCGRG	1 cut(s)	213
Bsp1286I	GDGCHC	1 cut(s)	148
Bsp143I	GATC	1 cut(s)	232
BspACI	CCGC	2 cut(s)	118, 218
BspANI	GGCC	3 cut(s)	159, 202, 212
BspCNI	CTCAG	1 cut(s)	252
BspLI	GGNNCC	1 cut(s)	261
BspPI	GGATC	1 cut(s)	240
BsrBI	CCGCTC	1 cut(s)	218
BssECI	CCNNGG	1 cut(s)	228
BssMI	GATC	1 cut(s)	232
BssT1I	CCWWGG	1 cut(s)	228
Bst6I	CTCTTC	1 cut(s)	159
BstC8I	GCNNGC	1 cut(s)	191
BstDEI	CTNAG	1 cut(s)	239
BstF5I	GGATG	1 cut(s)	34
BstKTI	GATC	1 cut(s)	235
BstMAI	GTCTC	1 cut(s)	174
BstMBI	GATC	1 cut(s)	232
BstMWI	GCNNNNNNNGC	2 cut(s)	143, 199
BsuRI	GGCC	3 cut(s)	159, 202, 212
BtsCI	GGATG	1 cut(s)	34
Cac8I	GCNNGC	1 cut(s)	191
Cfr13I	GGNCC	3 cut(s)	201, 211, 259
Csp6I	GTAC	1 cut(s)	7
CviJI	RGCY	7 cut(s)	13, 137, 146, 159, 189, 202, 212
CviKI_1	RGCY	7 cut(s)	13, 137, 146, 159, 189, 202, 212
CviQI	GTAC	1 cut(s)	7
DdeI	CTNAG	1 cut(s)	239
DpnI	GATC	1 cut(s)	234
DpnII	GATC	1 cut(s)	232
Eam1104I	CTCTTC	1 cut(s)	159
EarI	CTCTTC	1 cut(s)	159
Ecl136II	GAGCTC	1 cut(s)	146
Eco130I	CCWWGG	1 cut(s)	228
Eco24I	GRGCYC	1 cut(s)	148
Eco47I	GGWCC	1 cut(s)	259
Eco53kI	GAGCTC	1 cut(s)	146
Eco57I	CTGAAG	1 cut(s)	64
Eco88I	CYCGRG	1 cut(s)	213
EcoICRI	GAGCTC	1 cut(s)	146
EcoO109I	RGGNCCY	1 cut(s)	201
EcoT14I	CCWWGG	1 cut(s)	228
EcoT38I	GRGCYC	1 cut(s)	148
ErhI	CCWWGG	1 cut(s)	228
FaiI	YATR	4 cut(s)	23, 51, 154, 156
FokI	GGATG	1 cut(s)	21
FriOI	GRGCYC	1 cut(s)	148
FspBI	CTAG	1 cut(s)	149
HaeIII	GGCC	3 cut(s)	159, 202, 212
HinfI	GANTC	1 cut(s)	167
Hpy188I	TCNGA	3 cut(s)	83, 127, 242
HpyCH4IV	ACGT	1 cut(s)	178
HpyCH4V	TGCA	1 cut(s)	46
HpyF10VI	GCNNNNNNNGC	2 cut(s)	143, 199
HpyF3I	CTNAG	1 cut(s)	239
HpySE526I	ACGT	1 cut(s)	178
Kzo9I	GATC	1 cut(s)	232
LpnPI	CCDG	3 cut(s)	27, 83, 184
LweI	GCATC	1 cut(s)	33
MaeI	CTAG	1 cut(s)	149
MaeII	ACGT	1 cut(s)	178
MaeIII	GTNAC	1 cut(s)	113
MalI	GATC	1 cut(s)	234
MbiI	CCGCTC	1 cut(s)	218
MboI	GATC	1 cut(s)	232
MboII	GAAGA	2 cut(s)	96, 176
MhlI	GDGCHC	1 cut(s)	148
MluCI	AATT	1 cut(s)	24
MlyI	GAGTC	1 cut(s)	176
MnlI	CCTC	5 cut(s)	66, 121, 124, 214, 236
MwoI	GCNNNNNNNGC	2 cut(s)	143, 199
NdeII	GATC	1 cut(s)	232
NlaIV	GGNNCC	1 cut(s)	261
PleI	GAGTC	1 cut(s)	175
PpsI	GAGTC	1 cut(s)	175
Psp124BI	GAGCTC	1 cut(s)	148
PspN4I	GGNNCC	1 cut(s)	261
PspPI	GGNCC	3 cut(s)	201, 211, 259
RsaI	GTAC	1 cut(s)	8
RsaNI	GTAC	1 cut(s)	7
SacI	GAGCTC	1 cut(s)	148
Sau3AI	GATC	1 cut(s)	232
Sau96I	GGNCC	3 cut(s)	201, 211, 259
SchI	GAGTC	1 cut(s)	176
SduI	GDGCHC	1 cut(s)	148
SetI	ASST	5 cut(s)	113, 135, 139, 148, 181
SfaNI	GCATC	1 cut(s)	33
SinI	GGWCC	1 cut(s)	259
Sse9I	AATT	1 cut(s)	24
SsiI	CCGC	2 cut(s)	118, 218
SspMI	CTAG	1 cut(s)	149
SstI	GAGCTC	1 cut(s)	148
StyI	CCWWGG	1 cut(s)	228
TaiI	ACGT	1 cut(s)	181
TaqI	TCGA	1 cut(s)	252
TasI	AATT	1 cut(s)	24
TatI	WGTACW	1 cut(s)	6
TspDTI	ATGAA	2 cut(s)	23, 83
VpaK11BI	GGWCC	1 cut(s)	259
XspI	CTAG	1 cut(s)	149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.