Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016592.1

Orthogroup ID

OG0001366

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 805

Gene Structure 804 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016592.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

atgatgttgtccgttgtgtcgccgagaaagtccataacagagaaagtgtttgagagggtcgaaggggtttcttacctgagcagttatctcaagaacaacaacggtcataaccaccaccatcacagaaaagttgagagtgacgacgatgaggggactatggagcttgtgcagattgcatttgtccttttcttttatgtgattttggtgaatgatacagtggtatttgtgaaggatgtgcggaaagagtacacaggttggtctttaaataatatggagaggtcttacaagttcatggtgaaacatgttcagttatggaaggttgcacttcacagtacttctcctagatggatccacagtgtctatcttgctgccattgcagcctactatgcc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006643 GO:0006664 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008194 GO:0008378 GO:0009267 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009605 GO:0009707 GO:0009941 GO:0009987 GO:0009991 GO:0016020 GO:0016036 GO:0016740 GO:0016757 GO:0016758 GO:0019374 GO:0019752 GO:0019867 GO:0031090 GO:0031667 GO:0031668 GO:0031669 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032787 GO:0033554 GO:0035250 GO:0042170 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0071496 GO:0071704 GO:0098588 GO:0098805 GO:1901135 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00561 ko01100 map00561 map01100

Pfam Domains

Protein Families

Glyco_tran_28_C MGDG_synth

Protein Analysis

130

Amino Acids

15.22

Weight (kDa)

8.81

Isoelectric Point (pI)

31.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001366)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G11810 AT2G11810 AT2G11810 AT2G11810 AT5G20410
fragaria_vesca	FvH4_1g02220 FvH4_1g02220 FvH4_1g02220 FvH4_1g21680
malus_domestica	MD02G1020400.v1.1 MD15G1163200.v1.1
prunus_persica	Prupe.7G251400_v2.0.a1
pyrus_communis	pycom02g01790 pycom15g14680
rosa_chinensis	RchiOBHm_Chr2g0087331 RchiOBHm_Chr3g0481741 RchiOBHm_Chr4g0421821 RchiOBHm_Chr6g0246901
rosa_laevigata	RLG00000003836 RLG00000015857
rosa_multiflora	Rmu_co8187728.1_g000001 Rmu_co8222200.1_g000001 Rmu_sc0000540.1_g000032 Rmu_sc0003367.1_g000024 Rmu_sc0006064.1_g000001 Rmu_sc0007105.1_g000003 Rmu_sc0016592.1_g000001 Rmu_sc0037595.1_g000001
rosa_roxburghii	Rroxscaffold_1G00028410 Rroxscaffold_2G00111080 Rroxscaffold_2G00153680 Rroxscaffold_3G00242830 Rroxscaffold_4G00276430 Rroxscaffold_4G00300210 Rroxscaffold_7G00214190
rosa_rugosa	Rorug01G0474200
rosa_samantha	Rh1CG122800 Rh2AG027800 Rh2AG631400 Rh2BG027300 Rh2BG300600 Rh2CG028100 Rh2DG027900 Rh4BG234200 Rh5CG220000 Rh6BG190700 Rh6CG106700 Rh6CG108200 Rh6DG097200 Rh6DG098600 Rh7CG224800
rosa_wichuraiana	Rw1G013320 Rw2G002200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	238
AclWI	GGATC	2 cut(s)	343, 356
AfaI	GTAC	2 cut(s)	248, 334
AflIII	ACRYGT	1 cut(s)	301
AluBI	AGCT	1 cut(s)	163
AluI	AGCT	1 cut(s)	163
AlwI	GGATC	2 cut(s)	343, 356
ApeKI	GCWGC	2 cut(s)	368, 377
AsuHPI	GGTGA	2 cut(s)	217, 307
BaeI	ACNNNNGTAYC	2 cut(s)	204, 237
BamHI	GGATCC	1 cut(s)	348
BbvI	GCAGC	1 cut(s)	355
BccI	CCATC	2 cut(s)	126, 339
BfaI	CTAG	1 cut(s)	342
BisI	GCNGC	2 cut(s)	369, 378
BlsI	GCNGC	2 cut(s)	370, 379
BmcAI	AGTACT	1 cut(s)	334
BmiI	GGNNCC	1 cut(s)	350
Bpu10I	CCTNAGC	1 cut(s)	77
BpuEI	CTTGAG	1 cut(s)	74
Bse3DI	GCAATG	1 cut(s)	372
BseGI	GGATG	1 cut(s)	238
BseMI	GCAATG	1 cut(s)	372
BseMII	CTCAG	1 cut(s)	68
BseXI	GCAGC	1 cut(s)	355
BsgI	GTGCAG	1 cut(s)	188
BslFI	GGGAC	1 cut(s)	166
BsmFI	GGGAC	1 cut(s)	166
Bsp143I	GATC	1 cut(s)	348
BspACI	CCGC	1 cut(s)	238
BspCNI	CTCAG	1 cut(s)	69
BspLI	GGNNCC	1 cut(s)	350
BspPI	GGATC	2 cut(s)	343, 356
BsrDI	GCAATG	1 cut(s)	372
BssMI	GATC	1 cut(s)	348
Bst4CI	ACNGT	4 cut(s)	104, 217, 332, 356
BstDEI	CTNAG	1 cut(s)	77
BstF5I	GGATG	1 cut(s)	238
BstKTI	GATC	1 cut(s)	351
BstMBI	GATC	1 cut(s)	348
BstMWI	GCNNNNNNNGC	3 cut(s)	374, 377, 386
BstNSI	RCATGY	1 cut(s)	305
BstV1I	GCAGC	1 cut(s)	355
BstX2I	RGATCY	1 cut(s)	348
BstYI	RGATCY	1 cut(s)	348
BtsCI	GGATG	1 cut(s)	238
BtsIMutI	CAGTG	2 cut(s)	222, 361
Csp6I	GTAC	2 cut(s)	247, 333
CviAII	CATG	2 cut(s)	292, 302
CviJI	RGCY	2 cut(s)	163, 380
CviKI_1	RGCY	2 cut(s)	163, 380
CviQI	GTAC	2 cut(s)	247, 333
DdeI	CTNAG	1 cut(s)	77
DpnI	GATC	1 cut(s)	350
DpnII	GATC	1 cut(s)	348
DraI	TTTAAA	1 cut(s)	264
FaeI	CATG	2 cut(s)	295, 305
FaiI	YATR	9 cut(s)	35, 108, 158, 195, 272, 293, 303, 313, 387
FaqI	GGGAC	1 cut(s)	166
FatI	CATG	2 cut(s)	291, 301
Fnu4HI	GCNGC	2 cut(s)	369, 378
FokI	GGATG	1 cut(s)	245
Fsp4HI	GCNGC	2 cut(s)	369, 378
FspBI	CTAG	1 cut(s)	342
GluI	GCNGC	2 cut(s)	369, 378
Hin1II	CATG	2 cut(s)	295, 305
HphI	GGTGA	2 cut(s)	217, 307
Hpy166II	GTNNAC	1 cut(s)	249
Hpy188III	TCNNGA	1 cut(s)	91
Hpy8I	GTNNAC	1 cut(s)	249
Hpy99I	CGWCG	1 cut(s)	146
HpyAV	CCTTC	3 cut(s)	56, 223, 310
HpyCH4III	ACNGT	4 cut(s)	104, 217, 332, 356
HpyCH4V	TGCA	4 cut(s)	169, 176, 323, 377
HpyF10VI	GCNNNNNNNGC	3 cut(s)	374, 377, 386
HpyF3I	CTNAG	1 cut(s)	77
Hsp92II	CATG	2 cut(s)	295, 305
Kzo9I	GATC	1 cut(s)	348
LmnI	GCTCC	1 cut(s)	160
LpnPI	CCDG	2 cut(s)	89, 237
Lsp1109I	GCAGC	1 cut(s)	355
MaeI	CTAG	1 cut(s)	342
MaeIII	GTNAC	1 cut(s)	137
MalI	GATC	1 cut(s)	350
MboI	GATC	1 cut(s)	348
MflI	RGATCY	1 cut(s)	348
MnlI	CCTC	3 cut(s)	48, 142, 270
MseI	TTAA	1 cut(s)	263
MwoI	GCNNNNNNNGC	3 cut(s)	374, 377, 386
NdeII	GATC	1 cut(s)	348
NlaIII	CATG	2 cut(s)	295, 305
NlaIV	GGNNCC	1 cut(s)	350
NmeAIII	GCCGAG	1 cut(s)	48
NmuCI	GTSAC	1 cut(s)	137
NspI	RCATGY	1 cut(s)	305
PciI	ACATGT	1 cut(s)	301
PkrI	GCNGC	2 cut(s)	370, 379
PscI	ACATGT	1 cut(s)	301
PspN4I	GGNNCC	1 cut(s)	350
PsuI	RGATCY	1 cut(s)	348
RsaI	GTAC	2 cut(s)	248, 334
RsaNI	GTAC	2 cut(s)	247, 333
SaqAI	TTAA	1 cut(s)	263
SatI	GCNGC	2 cut(s)	369, 378
Sau3AI	GATC	1 cut(s)	348
ScaI	AGTACT	1 cut(s)	334
SetI	ASST	5 cut(s)	78, 165, 256, 281, 321
SmlI	CTYRAG	1 cut(s)	89
SmoI	CTYRAG	1 cut(s)	89
SsiI	CCGC	1 cut(s)	238
SspMI	CTAG	1 cut(s)	342
TaaI	ACNGT	4 cut(s)	104, 217, 332, 356
TaqI	TCGA	1 cut(s)	60
TatI	WGTACW	2 cut(s)	246, 332
Tru1I	TTAA	1 cut(s)	263
Tru9I	TTAA	1 cut(s)	263
TscAI	CASTG	2 cut(s)	222, 361
TseFI	GTSAC	1 cut(s)	137
TseI	GCWGC	2 cut(s)	368, 377
Tsp45I	GTSAC	1 cut(s)	137
TspDTI	ATGAA	1 cut(s)	280
TspRI	CASTG	2 cut(s)	222, 361
XceI	RCATGY	1 cut(s)	305
XspI	CTAG	1 cut(s)	342
ZrmI	AGTACT	1 cut(s)	334

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.