Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001366

Physical Location & Seq

Genomic Coordinates Reverse (-)

35336636 .. 35337967

Gene Structure 1332 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00242830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGATTCGACGACTTCACCACCTCCCTATCGTCATCACCATTCTCGTTTGGAGCCTCCGTCCCGAACCAAATCGGCCTTGCGACTTGGAAATCTTCAGACTTCGCTCCACTGGGTCTCATTCAATCACCTTTATCTCCGTCTCGCAAATCTTCAGCTTTGCTCCCTGCGCACGAGCTCTGCTACTCTCGCCTTCGCCCAATCCAAGAAAGTCCAAGACCCATCTCACCGACCGGACCAAGAACGTTTTGATTCGATAAGTGATACCGGCGGTGACATAGAGCTGCCGCGGAGGCCATCGGGGATGCGTTTCGGTTGGAGACGAATACGGGGCGACTTTTTGTTCTGTGTTGAGCTAGCATTTGTCCTTTTCTTTTATGTGATTTTGGTGAATGATACAGTGGTATTTGTGAAGGATGTGCGGAAAGAGTACACAGGTTGGCCTTTAAATAATATGGAGAGGTCTTACAAGTTCATGGTGAAACATGTTCAGCTATGGAAGGTTGCACTTCACAGTACTTCTCCTAGATGGATCCACAGTGTCTATCTTGCTGCCATTGCAGCCTACTATGCCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006643 GO:0006664 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008194 GO:0008378 GO:0009267 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009605 GO:0009707 GO:0009941 GO:0009987 GO:0009991 GO:0016020 GO:0016036 GO:0016740 GO:0016757 GO:0016758 GO:0019374 GO:0019752 GO:0019867 GO:0031090 GO:0031667 GO:0031668 GO:0031669 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032787 GO:0033554 GO:0035250 GO:0042170 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0071496 GO:0071704 GO:0098588 GO:0098805 GO:1901135 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00561 ko01100 map00561 map01100

Pfam Domains

Protein Families

Glyco_tran_28_C MGDG_synth

Protein Analysis

192

Amino Acids

22.34

Weight (kDa)

9.95

Isoelectric Point (pI)

54.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MGDG_synth	PF06925	132 - 192	3.2e-10	Monogalactosyldiacylglycerol (MGDG) synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001366)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G11810 AT2G11810 AT2G11810 AT2G11810 AT5G20410
fragaria_vesca	FvH4_1g02220 FvH4_1g02220 FvH4_1g02220 FvH4_1g21680
malus_domestica	MD02G1020400.v1.1 MD15G1163200.v1.1
prunus_persica	Prupe.7G251400_v2.0.a1
pyrus_communis	pycom02g01790 pycom15g14680
rosa_chinensis	RchiOBHm_Chr2g0087331 RchiOBHm_Chr3g0481741 RchiOBHm_Chr4g0421821 RchiOBHm_Chr6g0246901
rosa_laevigata	RLG00000003836 RLG00000015857
rosa_multiflora	Rmu_co8187728.1_g000001 Rmu_co8222200.1_g000001 Rmu_sc0000540.1_g000032 Rmu_sc0003367.1_g000024 Rmu_sc0006064.1_g000001 Rmu_sc0007105.1_g000003 Rmu_sc0016592.1_g000001 Rmu_sc0037595.1_g000001
rosa_roxburghii	Rroxscaffold_1G00028410 Rroxscaffold_2G00111080 Rroxscaffold_2G00153680 Rroxscaffold_3G00242830 Rroxscaffold_4G00276430 Rroxscaffold_4G00300210 Rroxscaffold_7G00214190
rosa_rugosa	Rorug01G0474200
rosa_samantha	Rh1CG122800 Rh2AG027800 Rh2AG631400 Rh2BG027300 Rh2BG300600 Rh2CG028100 Rh2DG027900 Rh4BG234200 Rh5CG220000 Rh6BG190700 Rh6CG106700 Rh6CG108200 Rh6DG097200 Rh6DG098600 Rh7CG224800
rosa_wichuraiana	Rw1G013320 Rw2G002200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	170
AccII	CGCG	1 cut(s)	289
AciI	CCGC	4 cut(s)	270, 287, 289, 421
AclI	AACGTT	1 cut(s)	244
AclWI	GGATC	2 cut(s)	526, 539
AcuI	CTGAAG	2 cut(s)	80, 137
AfaI	GTAC	2 cut(s)	431, 517
AflIII	ACRYGT	1 cut(s)	484
AgsI	TTSAA	1 cut(s)	124
AluBI	AGCT	5 cut(s)	157, 177, 283, 355, 493
AluI	AGCT	5 cut(s)	157, 177, 283, 355, 493
Alw21I	GWGCWC	1 cut(s)	179
Alw26I	GTCTC	3 cut(s)	121, 146, 313
AlwI	GGATC	2 cut(s)	526, 539
AoxI	GGCC	3 cut(s)	75, 293, 440
ApeKI	GCWGC	3 cut(s)	283, 551, 560
AspLEI	GCGC	1 cut(s)	171
AspS9I	GGNCC	1 cut(s)	235
AsuHPI	GGTGA	7 cut(s)	9, 29, 119, 218, 284, 400, 490
AsuNHI	GCTAGC	1 cut(s)	355
AvaII	GGWCC	1 cut(s)	235
BaeI	ACNNNNGTAYC	2 cut(s)	387, 420
BamHI	GGATCC	1 cut(s)	531
BanII	GRGCYC	1 cut(s)	179
BauI	CACGAG	1 cut(s)	172
Bbv12I	GWGCWC	1 cut(s)	179
BbvI	GCAGC	3 cut(s)	270, 538, 572
BccI	CCATC	3 cut(s)	229, 304, 522
BcoDI	GTCTC	3 cut(s)	121, 146, 313
BfaI	CTAG	2 cut(s)	356, 525
BglI	GCCNNNNNGGC	1 cut(s)	292
BisI	GCNGC	4 cut(s)	284, 287, 552, 561
BlsI	GCNGC	4 cut(s)	285, 288, 553, 562
BmcAI	AGTACT	1 cut(s)	517
Bme18I	GGWCC	1 cut(s)	235
BmgT120I	GGNCC	1 cut(s)	235
BmiI	GGNNCC	2 cut(s)	54, 533
BmrI	ACTGGG	1 cut(s)	121
BmsI	GCATC	1 cut(s)	294
BmtI	GCTAGC	1 cut(s)	359
BmuI	ACTGGG	1 cut(s)	121
BsaI	GGTCTC	1 cut(s)	121
BsaJI	CCNNGG	1 cut(s)	287
BsaWI	WCCGGW	1 cut(s)	232
BsaXI	ACNNNNNCTCC	2 cut(s)	44, 74
Bse118I	RCCGGY	1 cut(s)	266
Bse1I	ACTGG	1 cut(s)	116
Bse3DI	GCAATG	1 cut(s)	555
BseDI	CCNNGG	1 cut(s)	287
BseGI	GGATG	2 cut(s)	309, 421
BseMI	GCAATG	1 cut(s)	555
BseNI	ACTGG	1 cut(s)	116
BseXI	GCAGC	3 cut(s)	270, 538, 572
Bsh1236I	CGCG	1 cut(s)	289
Bsh1285I	CGRYCG	1 cut(s)	233
BshFI	GGCC	3 cut(s)	77, 295, 442
BsiEI	CGRYCG	1 cut(s)	233
BsiHKAI	GWGCWC	1 cut(s)	179
BsiSI	CCGG	2 cut(s)	233, 267
BslFI	GGGAC	1 cut(s)	46
BsmAI	GTCTC	3 cut(s)	121, 146, 313
BsmBI	CGTCTC	2 cut(s)	146, 313
BsmFI	GGGAC	1 cut(s)	46
BsnI	GGCC	3 cut(s)	77, 295, 442
Bso31I	GGTCTC	1 cut(s)	121
Bsp1286I	GDGCHC	1 cut(s)	179
Bsp143I	GATC	1 cut(s)	531
BspACI	CCGC	4 cut(s)	270, 287, 289, 421
BspANI	GGCC	3 cut(s)	77, 295, 442
BspFNI	CGCG	1 cut(s)	289
BspLI	GGNNCC	2 cut(s)	54, 533
BspOI	GCTAGC	1 cut(s)	359
BspPI	GGATC	2 cut(s)	526, 539
BspTNI	GGTCTC	1 cut(s)	121
BsrDI	GCAATG	1 cut(s)	555
BsrFI	RCCGGY	1 cut(s)	266
BsrI	ACTGG	1 cut(s)	116
BssAI	RCCGGY	1 cut(s)	266
BssECI	CCNNGG	1 cut(s)	287
BssMI	GATC	1 cut(s)	531
BssSI	CACGAG	1 cut(s)	172
Bst2BI	CACGAG	1 cut(s)	172
Bst4CI	ACNGT	3 cut(s)	400, 515, 539
BstC8I	GCNNGC	1 cut(s)	357
BstDSI	CCRYGG	1 cut(s)	287
BstF5I	GGATG	2 cut(s)	309, 421
BstFNI	CGCG	1 cut(s)	289
BstHHI	GCGC	1 cut(s)	171
BstKTI	GATC	1 cut(s)	534
BstMAI	GTCTC	3 cut(s)	121, 146, 313
BstMBI	GATC	1 cut(s)	531
BstMCI	CGRYCG	1 cut(s)	233
BstMWI	GCNNNNNNNGC	6 cut(s)	168, 188, 292, 557, 560, 569
BstNSI	RCATGY	1 cut(s)	488
BstUI	CGCG	1 cut(s)	289
BstV1I	GCAGC	3 cut(s)	270, 538, 572
BstX2I	RGATCY	1 cut(s)	531
BstYI	RGATCY	1 cut(s)	531
BsuRI	GGCC	3 cut(s)	77, 295, 442
BtgI	CCRYGG	1 cut(s)	287
BtsCI	GGATG	2 cut(s)	309, 421
BtsIMutI	CAGTG	3 cut(s)	109, 405, 544
Cac8I	GCNNGC	1 cut(s)	357
CfoI	GCGC	1 cut(s)	171
Cfr10I	RCCGGY	1 cut(s)	266
Cfr13I	GGNCC	1 cut(s)	235
Cfr42I	CCGCGG	1 cut(s)	290
Csp6I	GTAC	2 cut(s)	430, 516
CviAII	CATG	2 cut(s)	475, 485
CviQI	GTAC	2 cut(s)	430, 516
DpnI	GATC	1 cut(s)	533
DpnII	GATC	1 cut(s)	531
DraI	TTTAAA	1 cut(s)	447
Ecl136II	GAGCTC	1 cut(s)	177
Eco24I	GRGCYC	1 cut(s)	179
Eco31I	GGTCTC	1 cut(s)	121
Eco47I	GGWCC	1 cut(s)	235
Eco53kI	GAGCTC	1 cut(s)	177
Eco57I	CTGAAG	2 cut(s)	80, 137
EcoICRI	GAGCTC	1 cut(s)	177
EcoT38I	GRGCYC	1 cut(s)	179
Esp3I	CGTCTC	2 cut(s)	146, 313
FaeI	CATG	2 cut(s)	478, 488
FaiI	YATR	7 cut(s)	278, 378, 455, 476, 486, 496, 570
FaqI	GGGAC	1 cut(s)	46
FatI	CATG	2 cut(s)	474, 484
Fnu4HI	GCNGC	4 cut(s)	284, 287, 552, 561
FokI	GGATG	2 cut(s)	316, 428
FriOI	GRGCYC	1 cut(s)	179
Fsp4HI	GCNGC	4 cut(s)	284, 287, 552, 561
FspBI	CTAG	2 cut(s)	356, 525
FspI	TGCGCA	1 cut(s)	170
GlaI	GCGC	1 cut(s)	170
GluI	GCNGC	4 cut(s)	284, 287, 552, 561
HaeIII	GGCC	3 cut(s)	77, 295, 442
HapII	CCGG	2 cut(s)	233, 267
HhaI	GCGC	1 cut(s)	171
Hin1II	CATG	2 cut(s)	478, 488
Hin6I	GCGC	1 cut(s)	169
HinP1I	GCGC	1 cut(s)	169
HinfI	GANTC	2 cut(s)	5, 251
HpaII	CCGG	2 cut(s)	233, 267
HphI	GGTGA	7 cut(s)	9, 29, 119, 218, 284, 400, 490
Hpy166II	GTNNAC	1 cut(s)	432
Hpy188I	TCNGA	1 cut(s)	99
Hpy188III	TCNNGA	1 cut(s)	63
Hpy8I	GTNNAC	1 cut(s)	432
Hpy99I	CGWCG	1 cut(s)	13
HpyAV	CCTTC	3 cut(s)	202, 406, 493
HpyCH4III	ACNGT	3 cut(s)	400, 515, 539
HpyCH4IV	ACGT	1 cut(s)	244
HpyCH4V	TGCA	2 cut(s)	506, 560
HpyF10VI	GCNNNNNNNGC	6 cut(s)	168, 188, 292, 557, 560, 569
HpySE526I	ACGT	1 cut(s)	244
Hsp92II	CATG	2 cut(s)	478, 488
HspAI	GCGC	1 cut(s)	169
KspI	CCGCGG	1 cut(s)	290
Kzo9I	GATC	1 cut(s)	531
LmnI	GCTCC	3 cut(s)	52, 111, 167
LpnPI	CCDG	5 cut(s)	97, 179, 246, 280, 420
Lsp1109I	GCAGC	3 cut(s)	270, 538, 572
LweI	GCATC	1 cut(s)	294
MaeI	CTAG	2 cut(s)	356, 525
MaeII	ACGT	1 cut(s)	244
MaeIII	GTNAC	1 cut(s)	272
MalI	GATC	1 cut(s)	533
MboI	GATC	1 cut(s)	531
MboII	GAAGA	2 cut(s)	86, 143
MflI	RGATCY	1 cut(s)	531
MhlI	GDGCHC	1 cut(s)	179
MmeI	TCCRAC	1 cut(s)	296
MnlI	CCTC	4 cut(s)	33, 66, 285, 453
MseI	TTAA	1 cut(s)	446
MspA1I	CMGCKG	1 cut(s)	289
MspI	CCGG	2 cut(s)	233, 267
MvnI	CGCG	1 cut(s)	289
MwoI	GCNNNNNNNGC	6 cut(s)	168, 188, 292, 557, 560, 569
NdeII	GATC	1 cut(s)	531
NheI	GCTAGC	1 cut(s)	355
NlaIII	CATG	2 cut(s)	478, 488
NlaIV	GGNNCC	2 cut(s)	54, 533
NmuCI	GTSAC	1 cut(s)	272
NsbI	TGCGCA	1 cut(s)	170
NspI	RCATGY	1 cut(s)	488
PciI	ACATGT	1 cut(s)	484
PfeI	GAWTC	2 cut(s)	5, 251
PkrI	GCNGC	4 cut(s)	285, 288, 553, 562
PscI	ACATGT	1 cut(s)	484
Psp124BI	GAGCTC	1 cut(s)	179
Psp1406I	AACGTT	1 cut(s)	244
PspN4I	GGNNCC	2 cut(s)	54, 533
PspPI	GGNCC	1 cut(s)	235
PsuI	RGATCY	1 cut(s)	531
RsaI	GTAC	2 cut(s)	431, 517
RsaNI	GTAC	2 cut(s)	430, 516
SacI	GAGCTC	1 cut(s)	179
SacII	CCGCGG	1 cut(s)	290
SaqAI	TTAA	1 cut(s)	446
SatI	GCNGC	4 cut(s)	284, 287, 552, 561
Sau3AI	GATC	1 cut(s)	531
Sau96I	GGNCC	1 cut(s)	235
ScaI	AGTACT	1 cut(s)	517
SduI	GDGCHC	1 cut(s)	179
SfaNI	GCATC	1 cut(s)	294
Sfr303I	CCGCGG	1 cut(s)	290
SgrBI	CCGCGG	1 cut(s)	290
SinI	GGWCC	1 cut(s)	235
SsiI	CCGC	4 cut(s)	270, 287, 289, 421
SspMI	CTAG	2 cut(s)	356, 525
SstI	GAGCTC	1 cut(s)	179
TaaI	ACNGT	3 cut(s)	400, 515, 539
TaiI	ACGT	1 cut(s)	247
TaqI	TCGA	2 cut(s)	8, 254
TatI	WGTACW	2 cut(s)	429, 515
TauI	GCSGC	1 cut(s)	289
TfiI	GAWTC	2 cut(s)	5, 251
Tru1I	TTAA	1 cut(s)	446
Tru9I	TTAA	1 cut(s)	446
TscAI	CASTG	3 cut(s)	116, 405, 544
TseFI	GTSAC	1 cut(s)	272
TseI	GCWGC	3 cut(s)	283, 551, 560
Tsp45I	GTSAC	1 cut(s)	272
TspDTI	ATGAA	1 cut(s)	463
TspGWI	ACGGA	2 cut(s)	48, 128
TspRI	CASTG	3 cut(s)	116, 405, 544
VpaK11BI	GGWCC	1 cut(s)	235
XceI	RCATGY	1 cut(s)	488
XspI	CTAG	2 cut(s)	356, 525
ZrmI	AGTACT	1 cut(s)	517

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.