AT5G27607

26S proteasome

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0001418
Physical Location & Seq
Forward (+)
9760593 .. 9762087
1495 bp
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UTR
Exon/CDS
Intron
AT5G27607.1

Sequence Viewer

Length: 369 bp
ATGTCAATTAAGGTACGTTCTAAATTTCTAATGCCGCCGCAGCTTCCGTTGTATTGTCCGTCGTACTCCGTCAGTGTATTCCGAGCTGTTCTTCTGATGAAAAGCCATCGCAACTTTTTGTCATATTCTTCTGCTTCATCCTCTAAAGAATCGCTGGTTCTCTCAACATCGTATATGGCTCTTCCTCGATCTCTCGCATTTTTCCCTTTTTCAATGATTCTTCTTCGTCTCCGACCTGAAATGGTGGTTGGTTGGTATCATTCACATCCTGGTTTTGGCTTTTGGCGCTCTGGGGTTGACATTAATACTCAACATAGTTTTGAACCTTTGAACCAGCGAGCTGTAGCTCAGTTAAAAGAAAATGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03050 ko05169 map03050 map05169
Pfam Domains
Protein Families
JAB MitMem_reg

Protein Analysis

122

Amino Acids

13.99

Weight (kDa)

10.0

Isoelectric Point (pI)

55.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
JAB PF01398 78 - 112 1.4e-08 JAB1/Mov34/MPN/PAD-1 ubiquitin protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 35, 38
AcsI RAATTY 1 cut(s) 23
AfaI GTAC 2 cut(s) 15, 65
AfiI CCNNNNNNNGG 1 cut(s) 275
AgsI TTSAA 3 cut(s) 213, 323, 331
AjnI CCWGG 1 cut(s) 268
AjuI GAANNNNNNNTTGG 2 cut(s) 231, 263
AluBI AGCT 4 cut(s) 43, 86, 341, 347
AluI AGCT 4 cut(s) 43, 86, 341, 347
Alw26I GTCTC 1 cut(s) 233
ApeKI GCWGC 1 cut(s) 40
ApoI RAATTY 1 cut(s) 23
AseI ATTAAT 1 cut(s) 303
AspLEI GCGC 1 cut(s) 288
BbvI GCAGC 1 cut(s) 52
BccI CCATC 1 cut(s) 114
BciT130I CCWGG 1 cut(s) 270
BcoDI GTCTC 1 cut(s) 233
BfmI CTRYAG 1 cut(s) 342
BfoI RGCGCY 1 cut(s) 289
BisI GCNGC 3 cut(s) 35, 38, 41
BlsI GCNGC 3 cut(s) 36, 39, 42
Bme1390I CCNGG 1 cut(s) 270
BmrFI CCNGG 1 cut(s) 270
Bsc4I CCNNNNNNNGG 1 cut(s) 275
BseBI CCWGG 1 cut(s) 270
BseGI GGATG 2 cut(s) 137, 265
BseLI CCNNNNNNNGG 1 cut(s) 275
BseMII CTCAG 1 cut(s) 362
BseXI GCAGC 1 cut(s) 52
BslI CCNNNNNNNGG 1 cut(s) 275
BsmAI GTCTC 1 cut(s) 233
BsmBI CGTCTC 1 cut(s) 233
Bsp143I GATC 1 cut(s) 188
BspACI CCGC 2 cut(s) 35, 38
BspCNI CTCAG 1 cut(s) 361
BspQI GCTCTTC 1 cut(s) 186
BssMI GATC 1 cut(s) 188
Bst2UI CCWGG 1 cut(s) 270
Bst6I CTCTTC 1 cut(s) 186
BstC8I GCNNGC 1 cut(s) 339
BstDEI CTNAG 1 cut(s) 348
BstF5I GGATG 2 cut(s) 137, 265
BstH2I RGCGCY 1 cut(s) 289
BstHHI GCGC 1 cut(s) 288
BstKTI GATC 1 cut(s) 191
BstMAI GTCTC 1 cut(s) 233
BstMBI GATC 1 cut(s) 188
BstMWI GCNNNNNNNGC 2 cut(s) 40, 285
BstNI CCWGG 1 cut(s) 270
BstSCI CCNGG 1 cut(s) 268
BstSFI CTRYAG 1 cut(s) 342
BstV1I GCAGC 1 cut(s) 52
BtgZI GCGATG 1 cut(s) 92
BtsCI GGATG 2 cut(s) 137, 265
BtsIMutI CAGTG 1 cut(s) 79
Cac8I GCNNGC 1 cut(s) 339
CfoI GCGC 1 cut(s) 288
Csp6I GTAC 2 cut(s) 14, 64
CviJI RGCY 7 cut(s) 43, 86, 105, 179, 279, 341, 347
CviKI_1 RGCY 7 cut(s) 43, 86, 105, 179, 279, 341, 347
CviQI GTAC 2 cut(s) 14, 64
DdeI CTNAG 1 cut(s) 348
DpnI GATC 1 cut(s) 190
DpnII GATC 1 cut(s) 188
Eam1104I CTCTTC 1 cut(s) 186
EarI CTCTTC 1 cut(s) 186
EcoRII CCWGG 1 cut(s) 268
Esp3I CGTCTC 1 cut(s) 233
FaiI YATR 4 cut(s) 124, 174, 176, 315
Fnu4HI GCNGC 3 cut(s) 35, 38, 41
FokI GGATG 2 cut(s) 124, 252
Fsp4HI GCNGC 3 cut(s) 35, 38, 41
GlaI GCGC 1 cut(s) 287
GluI GCNGC 3 cut(s) 35, 38, 41
HaeII RGCGCY 1 cut(s) 289
HhaI GCGC 1 cut(s) 288
Hin6I GCGC 1 cut(s) 286
HinP1I GCGC 1 cut(s) 286
HincII GTYRAC 1 cut(s) 298
HindII GTYRAC 1 cut(s) 298
HinfI GANTC 2 cut(s) 149, 217
Hpy166II GTNNAC 1 cut(s) 298
Hpy188I TCNGA 3 cut(s) 83, 96, 233
Hpy8I GTNNAC 1 cut(s) 298
Hpy99I CGWCG 1 cut(s) 64
HpyCH4IV ACGT 1 cut(s) 16
HpyF10VI GCNNNNNNNGC 2 cut(s) 40, 285
HpyF3I CTNAG 1 cut(s) 348
HpySE526I ACGT 1 cut(s) 16
HspAI GCGC 1 cut(s) 286
Kzo9I GATC 1 cut(s) 188
LguI GCTCTTC 1 cut(s) 186
LpnPI CCDG 6 cut(s) 140, 249, 255, 276, 282, 347
Lsp1109I GCAGC 1 cut(s) 52
MaeII ACGT 1 cut(s) 16
MalI GATC 1 cut(s) 190
MboI GATC 1 cut(s) 188
MboII GAAGA 5 cut(s) 83, 120, 173, 212, 215
MluCI AATT 2 cut(s) 6, 23
MmeI TCCRAC 1 cut(s) 256
MnlI CCTC 2 cut(s) 151, 195
MseI TTAA 3 cut(s) 9, 303, 353
MspR9I CCNGG 1 cut(s) 270
MvaI CCWGG 1 cut(s) 270
MwoI GCNNNNNNNGC 2 cut(s) 40, 285
NdeII GATC 1 cut(s) 188
PciSI GCTCTTC 1 cut(s) 186
PfeI GAWTC 2 cut(s) 149, 217
PkrI GCNGC 3 cut(s) 36, 39, 42
PshBI ATTAAT 1 cut(s) 303
Psp6I CCWGG 1 cut(s) 268
PspGI CCWGG 1 cut(s) 268
RsaI GTAC 2 cut(s) 15, 65
RsaNI GTAC 2 cut(s) 14, 64
SapI GCTCTTC 1 cut(s) 186
SaqAI TTAA 3 cut(s) 9, 303, 353
SatI GCNGC 3 cut(s) 35, 38, 41
Sau3AI GATC 1 cut(s) 188
ScrFI CCNGG 1 cut(s) 270
SetI ASST 8 cut(s) 15, 19, 45, 88, 238, 328, 343, 349
SfcI CTRYAG 1 cut(s) 342
Sse9I AATT 2 cut(s) 6, 23
SsiI CCGC 2 cut(s) 35, 38
StyD4I CCNGG 1 cut(s) 268
TaiI ACGT 1 cut(s) 19
TaqI TCGA 1 cut(s) 187
TasI AATT 2 cut(s) 6, 23
TauI GCSGC 2 cut(s) 37, 40
TfiI GAWTC 2 cut(s) 149, 217
Tru1I TTAA 3 cut(s) 9, 303, 353
Tru9I TTAA 3 cut(s) 9, 303, 353
TscAI CASTG 1 cut(s) 79
TseI GCWGC 1 cut(s) 40
TspDTI ATGAA 2 cut(s) 113, 126
TspGWI ACGGA 3 cut(s) 36, 48, 58
TspRI CASTG 1 cut(s) 79
VspI ATTAAT 1 cut(s) 303
XapI RAATTY 1 cut(s) 23
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.