Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001418

Physical Location & Seq

Genomic Coordinates Reverse (-)

45092813 .. 45093458

Gene Structure 646 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003163

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGAGGTCATGGGATTGATGCTCGGTGAGTTCGTGGACGATTACACAGTTCGTGTGGTTGATGTCTTTGCAATGCCGGAGAACGACATGAATACACAGCAAAGCTTTGAGGCTTTGAACAACCGTGCTGTTGCTGTGGTGGTGGATCCAATTCAAAGTGTCAAGGGCATGGTGGTTATGGATGCGTTCTGCCTTAGCAACCCCCAAACTATGATGTTTGATCAAAAACCGAGGCAGACCACATGCAATCTAGGGCATCTCAATAAGCCATCCATTCAAGCGTTGGTGCATGGGTTAAACCGACATTATTATTCCATAGCGATTAACTACAGCAAGAATGAACTTGAGGAGAAGATGTTGATTAGTTTTCATAAGAAGAATTGGGCTGATGGGCTAACACTTGAGCATTTTGATACTCATTCAAAGACATGTATACGTATCAAGTTGATTTGCCTTGTATTCTTGAAGGGTCGGACAATTGTCCCTCTTAATTTGTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0019538 GO:0030163 GO:0032991 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

JAB MitMem_reg

Protein Analysis

167

Amino Acids

18.93

Weight (kDa)

6.58

Isoelectric Point (pI)

25.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
JAB	PF01398	2 - 40	4e-06	JAB1/Mov34/MPN/PAD-1 ubiquitin protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001418)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27607
fragaria_vesca	FvH4_2g08370 FvH4_2g34670 FvH4_2g34751 FvH4_2g34752
prunus_persica	Prupe.5G147900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0029831 RchiOBHm_Chr6g0263981 RchiOBHm_Chr6g0263991 RchiOBHm_Chr7g0209141 RchiOBHm_Chr7g0241551 RchiOBHm_Chr7g0241561
rosa_laevigata	RLG00000000567 RLG00000003163 RLG00000014345
rosa_multiflora	Rmu_sc0000565.1_g000018 Rmu_sc0000821.1_g000027 Rmu_sc0003785.1_g000020 Rmu_sc0003785.1_g000021 Rmu_sc0016758.1_g000001 Rmu_sc0038305.1_g000002
rosa_roxburghii	Rroxscaffold_176G00431080 Rroxscaffold_6G00393170 Rroxscaffold_7G00161020 Rroxscaffold_7G00204470
rosa_rugosa	Rorug06G0005100
rosa_samantha	Rh1AG408300 Rh1AG409100 Rh4AG241200 Rh4BG244500 Rh5DG211200 Rh6AG124400 Rh6AG124500 Rh6AG314100 Rh6BG119800 Rh6BG120100 Rh6CG117900 Rh6CG118000 Rh6DG106400 Rh6DG106500 Rh7AG243700 Rh7AG243800 Rh7BG238900 Rh7BG239000 Rh7BG273300 Rh7CG259200 Rh7CG259300 Rh7DG484400
rosa_wichuraiana	Rw1G010210 Rw1G015980 Rw6G010680 Rw6G010830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	433
AclWI	GGATC	2 cut(s)	140, 153
AflIII	ACRYGT	1 cut(s)	428
AgsI	TTSAA	5 cut(s)	118, 155, 278, 423, 466
AluBI	AGCT	1 cut(s)	105
AluI	AGCT	1 cut(s)	105
AlwI	GGATC	2 cut(s)	140, 153
AsuHPI	GGTGA	1 cut(s)	38
BamHI	GGATCC	1 cut(s)	145
BccI	CCATC	2 cut(s)	277, 383
BclI	TGATCA	1 cut(s)	220
BfaI	CTAG	1 cut(s)	251
BfmI	CTRYAG	1 cut(s)	328
BmiI	GGNNCC	1 cut(s)	147
BmsI	GCATC	3 cut(s)	9, 172, 265
BoxI	GACNNNNGTC	1 cut(s)	479
Bpu10I	CCTNAGC	1 cut(s)	194
BpuEI	CTTGAG	2 cut(s)	365, 422
BsaAI	YACGTR	1 cut(s)	437
BsaJI	CCNNGG	1 cut(s)	230
BsaXI	ACNNNNNCTCC	2 cut(s)	341, 371
Bse3DI	GCAATG	1 cut(s)	78
BseDI	CCNNGG	1 cut(s)	230
BseGI	GGATG	2 cut(s)	187, 269
BseMI	GCAATG	1 cut(s)	78
BseRI	GAGGAG	1 cut(s)	362
BsiSI	CCGG	1 cut(s)	77
BslFI	GGGAC	1 cut(s)	467
BsmFI	GGGAC	1 cut(s)	467
Bsp143I	GATC	2 cut(s)	145, 220
BspLI	GGNNCC	1 cut(s)	147
BspPI	GGATC	2 cut(s)	140, 153
BsrDI	GCAATG	1 cut(s)	78
BssECI	CCNNGG	1 cut(s)	230
BssMI	GATC	2 cut(s)	145, 220
BssNAI	GTATAC	1 cut(s)	434
Bst1107I	GTATAC	1 cut(s)	434
Bst4CI	ACNGT	2 cut(s)	49, 125
BstBAI	YACGTR	1 cut(s)	437
BstDEI	CTNAG	1 cut(s)	194
BstF5I	GGATG	2 cut(s)	187, 269
BstKTI	GATC	2 cut(s)	148, 223
BstMBI	GATC	2 cut(s)	145, 220
BstNSI	RCATGY	2 cut(s)	246, 432
BstPAI	GACNNNNGTC	1 cut(s)	479
BstSFI	CTRYAG	1 cut(s)	328
BstSNI	TACGTA	1 cut(s)	437
BstX2I	RGATCY	1 cut(s)	145
BstYI	RGATCY	1 cut(s)	145
BstZ17I	GTATAC	1 cut(s)	434
BtsCI	GGATG	2 cut(s)	187, 269
CviAII	CATG	6 cut(s)	10, 88, 169, 243, 290, 429
CviJI	RGCY	5 cut(s)	105, 113, 268, 386, 394
CviKI_1	RGCY	5 cut(s)	105, 113, 268, 386, 394
DdeI	CTNAG	1 cut(s)	194
DpnI	GATC	2 cut(s)	147, 222
DpnII	GATC	2 cut(s)	145, 220
Eco105I	TACGTA	1 cut(s)	437
FaeI	CATG	6 cut(s)	13, 91, 172, 246, 293, 432
FaqI	GGGAC	1 cut(s)	467
FatI	CATG	6 cut(s)	9, 87, 168, 242, 289, 428
FbaI	TGATCA	1 cut(s)	220
FblI	GTMKAC	1 cut(s)	433
FokI	GGATG	2 cut(s)	194, 256
FspBI	CTAG	1 cut(s)	251
HapII	CCGG	1 cut(s)	77
Hin1II	CATG	6 cut(s)	13, 91, 172, 246, 293, 432
HindIII	AAGCTT	1 cut(s)	103
HpaII	CCGG	1 cut(s)	77
HphI	GGTGA	1 cut(s)	38
Hpy166II	GTNNAC	2 cut(s)	37, 434
Hpy188I	TCNGA	1 cut(s)	474
Hpy188III	TCNNGA	1 cut(s)	463
Hpy8I	GTNNAC	2 cut(s)	37, 434
HpyAV	CCTTC	1 cut(s)	460
HpyCH4III	ACNGT	2 cut(s)	49, 125
HpyCH4IV	ACGT	1 cut(s)	436
HpyCH4V	TGCA	3 cut(s)	71, 246, 289
HpyF3I	CTNAG	1 cut(s)	194
HpySE526I	ACGT	1 cut(s)	436
Hsp92II	CATG	6 cut(s)	13, 91, 172, 246, 293, 432
Ksp22I	TGATCA	1 cut(s)	220
Kzo9I	GATC	2 cut(s)	145, 220
LpnPI	CCDG	1 cut(s)	90
LweI	GCATC	3 cut(s)	9, 172, 265
MaeI	CTAG	1 cut(s)	251
MaeII	ACGT	1 cut(s)	436
MalI	GATC	2 cut(s)	147, 222
MboI	GATC	2 cut(s)	145, 220
MboII	GAAGA	2 cut(s)	364, 388
MfeI	CAATTG	1 cut(s)	477
MflI	RGATCY	1 cut(s)	145
MluCI	AATT	4 cut(s)	150, 379, 477, 490
MmeI	TCCRAC	1 cut(s)	452
MnlI	CCTC	4 cut(s)	103, 225, 340, 495
MseI	TTAA	3 cut(s)	296, 324, 489
MspI	CCGG	1 cut(s)	77
MunI	CAATTG	1 cut(s)	477
NdeII	GATC	2 cut(s)	145, 220
NlaIII	CATG	6 cut(s)	13, 91, 172, 246, 293, 432
NlaIV	GGNNCC	1 cut(s)	147
NspI	RCATGY	2 cut(s)	246, 432
PciI	ACATGT	1 cut(s)	428
PcsI	WCGNNNNNNNCGW	1 cut(s)	30
Ppu21I	YACGTR	1 cut(s)	437
PscI	ACATGT	1 cut(s)	428
PshAI	GACNNNNGTC	1 cut(s)	479
PspN4I	GGNNCC	1 cut(s)	147
PsuI	RGATCY	1 cut(s)	145
SaqAI	TTAA	3 cut(s)	296, 324, 489
Sau3AI	GATC	2 cut(s)	145, 220
SetI	ASST	3 cut(s)	9, 107, 439
SfaNI	GCATC	3 cut(s)	9, 172, 265
SfcI	CTRYAG	1 cut(s)	328
SmlI	CTYRAG	2 cut(s)	344, 401
SmoI	CTYRAG	2 cut(s)	344, 401
SnaBI	TACGTA	1 cut(s)	437
Sse9I	AATT	4 cut(s)	150, 379, 477, 490
SspMI	CTAG	1 cut(s)	251
TaaI	ACNGT	2 cut(s)	49, 125
TaiI	ACGT	1 cut(s)	439
TasI	AATT	4 cut(s)	150, 379, 477, 490
Tru1I	TTAA	3 cut(s)	296, 324, 489
Tru9I	TTAA	3 cut(s)	296, 324, 489
TspDTI	ATGAA	3 cut(s)	104, 354, 359
XceI	RCATGY	2 cut(s)	246, 432
XcmI	CCANNNNNNNNNTGG	1 cut(s)	280
XmiI	GTMKAC	1 cut(s)	433
XspI	CTAG	1 cut(s)	251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.